FC930411

Overview
NameFC930411
Unique NameFC930411
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: PSKR1_DAUCA (Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20
Identity = 52/123 (42.28%), Postives = 77/123 (62.60%), Query Frame = 1
Query:  289 NKDTGNVDVTFFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDE-SRKQLLDWKS 654
            NKD+ N       L  +L +T +F+ +N +G GGFG VYK  L  G ++A+KRLS  +GQ   EF+ EV  +++ QH NL  LLG C  K++K+L+Y +M N SLDY++ ++      LDWK+
Sbjct:  724 NKDSNNE----LSLDDILKSTSSFNQANIIGCGGFGLVYKATLPDGTKVAIKRLSGDTGQMDREFQAEVETLSRAQHPNLVHLLGYCNYKNDKLLIYSYMDNGSLDYWLHEKVDGPPSLDWKT 842          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.749e-20
Identity = 54/118 (45.76%), Postives = 72/118 (61.02%), Query Frame = 1
Query:  301 GNVDVTFFELSTVLAATDNFSTSNKLGQGGFGPVYKGKL-ATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFD-ESRKQLLDW 648
            G +    F    + AAT NF     LG+GGFG VYKG+L +TGQ +AVK+L     QG  EF  EVL+++ L H NL  L+G C + D+++LVYEFMP  SL+  + D    K+ LDW
Sbjct:   67 GQIAAHTFAFRELAAATMNFHPDTFLGEGGFGRVYKGRLDSTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEALDW 184          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: Y1357_ARATH (Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g30570 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 9.109e-20
Identity = 54/136 (39.71%), Postives = 80/136 (58.82%), Query Frame = 1
Query:  244 STRLSDREASTSAKRNKDTGNVDVTFFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQLLDWK 651
            S RL+   AST  ++           F L+ + AAT NF     +G GGFG VY+G+L  G  IA+KR +  S QG+ EF+ E++++++L+HR+L  L+G C E +E +LVYE+M N +L   +F  S    L WK
Sbjct:  493 SLRLNTLAASTMGRK-----------FTLAEIRAATKNFDDGLAIGVGGFGKVYRGELEDGTLIAIKRATPHSQQGLAEFETEIVMLSRLRHRHLVSLIGFCDEHNEMILVYEYMANGTLRSHLFG-SNLPPLSWK 616          

HSP 2 Score: 21.9422 bits (45), Expect = 9.109e-20
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = 3
Query:  648 EKRFDIILGIARGVLYLH 701
            ++R +  +G ARG+ YLH
Sbjct:  616 KQRLEACIGSARGLHYLH 633          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: Y1105_ARATH (Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana GN=At1g11050 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.191e-19
Identity = 54/127 (42.52%), Postives = 76/127 (59.84%), Query Frame = 1
Query:  286 RNKDTGNVDVTFFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKD----EKMLVYEFMPNKSLDYFIF--DESRKQLLDW 648
            R K   N    +F++  +  AT+NFS  N +G+GGFG VYKG L  G  IAVK++  +  QG  EF+NEV +I+ L+HRNL  L GC +  D    ++ LVY++M N +LD  +F   E+ K  L W
Sbjct:  271 RPKWRPNTGSIWFKIEELEKATNNFSQKNFIGRGGFGFVYKGVLPDGSVIAVKKVIESEFQGDAEFRNEVEIISNLKHRNLVPLRGCSMVDDDSESQRYLVYDYMSNGNLDDHLFPRGETTKMPLSW 397          

HSP 2 Score: 23.0978 bits (48), Expect = 1.191e-19
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 3
Query:  651 KRFDIILGIARGVLYLH 701
            +R  IIL +A+G+ YLH
Sbjct:  399 QRKSIILDVAKGLAYLH 415          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: WAKLI_ARATH (Wall-associated receptor kinase-like 22 OS=Arabidopsis thaliana GN=WAKL22 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19
Identity = 50/117 (42.74%), Postives = 70/117 (59.83%), Query Frame = 1
Query:  301 GNVDVT-FFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQLLDW 648
            GNV  +  F    +  ATDNF+ +  LGQGG G VYKG L  G+ +AVKR        +EEF NEV +++++ HRN+ KL+GCCLE +  +LVYE +PN  L   +  +S    + W
Sbjct:  401 GNVQSSKIFSSKELEKATDNFNMNRVLGQGGQGTVYKGMLVDGRIVAVKRSKVLDEDKVEEFINEVGVLSQINHRNIVKLMGCCLETEVPILVYEHIPNGDLFKRLHHDSDDYTMTW 517          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: BRL3_ARATH (Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19
Identity = 48/108 (44.44%), Postives = 70/108 (64.81%), Query Frame = 1
Query:  337 VLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQ--LLDWKS 654
            +L AT+ FS  + +G GGFG VYK KLA G  +A+K+L   +GQG  EF  E+  I K++HRNL  LLG C   +E++LVYE+M   SL+  + ++++K    LDW +
Sbjct:  851 LLEATNGFSADSMIGSGGFGDVYKAKLADGSVVAIKKLIQVTGQGDREFMAEMETIGKIKHRNLVPLLGYCKIGEERLLVYEYMKYGSLETVLHEKTKKGGIFLDWSA 958          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.621e-19
Identity = 51/111 (45.95%), Postives = 68/111 (61.26%), Query Frame = 1
Query:  322 FELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIE-EFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESR-KQLLDW 648
            F L  +L ATDNFS  N LG+GGFG VYKG+LA G  +AVKRL     +G E +F+ EV +I+   HRNL +L G C+   E++LVY +M N S+   + +       LDW
Sbjct:  282 FTLRELLVATDNFSNKNVLGRGGFGKVYKGRLADGNLVAVKRLKEERTKGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPEGNPALDW 392          

HSP 2 Score: 24.2534 bits (51), Expect = 2.621e-19
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  651 KRFDIILGIARGVLYLH 701
            KR  I LG ARG+ YLH
Sbjct:  394 KRKHIALGSARGLAYLH 410          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: Y4391_ARATH (Probable receptor-like protein kinase At4g39110 OS=Arabidopsis thaliana GN=At4g39110 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.386e-19
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 1
Query:  319 FFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPN 594
            +F LS +  AT NF  S  +G GGFG VY G L  G ++AVKR +  S QGI EF+ E+ +++KL+HR+L  L+G C E  E +LVYEFM N
Sbjct:  513 YFSLSELQEATKNFEASQIIGVGGFGNVYIGTLDDGTKVAVKRGNPQSEQGITEFQTEIQMLSKLRHRHLVSLIGYCDENSEMILVYEFMSN 604          

HSP 2 Score: 23.8682 bits (50), Expect = 3.386e-19
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  648 EKRFDIILGIARGVLYLH 701
            ++R +I +G ARG+ YLH
Sbjct:  622 KQRLEICIGSARGLHYLH 639          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: THE1_ARATH (Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.387e-19
Identity = 47/110 (42.73%), Postives = 68/110 (61.82%), Query Frame = 1
Query:  322 FELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQLLDWK 651
            F    ++ AT+ F  S+ LG GGFG VYKG L  G ++AVKR +  S QG+ EF+ E+ +++KL+HR+L  L+G C E+ E +LVYE+M N  L   ++       L WK
Sbjct:  498 FMFQEIMDATNKFDESSLLGVGGFGRVYKGTLEDGTKVAVKRGNPRSEQGMAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGADLPP-LSWK 606          

HSP 2 Score: 24.2534 bits (51), Expect = 3.387e-19
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  648 EKRFDIILGIARGVLYLH 701
            ++R +I +G ARG+ YLH
Sbjct:  606 KQRLEICIGAARGLHYLH 623          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: Y2393_ARATH (Probable receptor-like protein kinase At2g39360 OS=Arabidopsis thaliana GN=At2g39360 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.390e-19
Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  322 FELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQLLDWK 651
            + L+ +  ATD+F  S  +G GGFG VYKG L    E+AVKR +  S QG+ EFK EV ++ + +HR+L  L+G C E  E ++VYE+M   +L   ++D   K  L W+
Sbjct:  475 YPLALIKEATDDFDESLVIGVGGFGKVYKGVLRDKTEVAVKRGAPQSRQGLAEFKTEVEMLTQFRHRHLVSLIGYCDENSEMIIVYEYMEKGTLKDHLYDLDDKPRLSWR 584          

HSP 2 Score: 23.483 bits (49), Expect = 3.390e-19
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 3
Query:  651 KRFDIILGIARGVLYLH 701
            +R +I +G ARG+ YLH
Sbjct:  585 QRLEICVGAARGLHYLH 601          
The following BLAST results are available for this feature:
BLAST of FC930411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
PSKR1_DAUCA4.543e-2042.28Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR... [more]
PBS1_ARATH7.749e-2045.76Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
Y1357_ARATH9.109e-2039.71Probable receptor-like protein kinase At1g30570 OS... [more]
Y1105_ARATH1.191e-1942.52Probable receptor-like protein kinase At1g11050 OS... [more]
WAKLI_ARATH1.726e-1942.74Wall-associated receptor kinase-like 22 OS=Arabido... [more]
BRL3_ARATH1.726e-1944.44Receptor-like protein kinase BRI1-like 3 OS=Arabid... [more]
SERK4_ARATH2.621e-1945.95Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
Y4391_ARATH3.386e-1950.00Probable receptor-like protein kinase At4g39110 OS... [more]
THE1_ARATH3.387e-1942.73Receptor-like protein kinase THESEUS 1 OS=Arabidop... [more]
Y2393_ARATH3.390e-1941.82Probable receptor-like protein kinase At2g39360 OS... [more]

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Properties
Property NameValue
Genbank descriptionC34007C07EF PostHarvC1 Citrus clementina cDNA clone C34007C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930411 ID=FC930411; Name=FC930411; organism=Citrus clementina; type=EST; length=707bp
GACATCACAAATGCTGGTCAAGACTTATTTGTACGTGCTGACGCGGCTGA
ATTAGCTGCAGAGGCACAGAAAAACTCAAAAAGCAATCGAGCAAGAAAGA
GGAGGCTTGCTCTTATTATCGTCGCTATTGTTCTCGGAGTGCTTCTGCTG
GGCTTATGCTACTTTTTCCTGTGGAGAAGGCTTGATACAAGGATAGGTGA
GAGGAAAAGACAAAGGCGACGTGAATTGTTATTTTTGAATTCAAGCACAA
GATTGTCTGATCGTGAGGCCTCCACTAGTGCTAAACGCAACAAAGACACT
GGGAATGTAGATGTGACATTCTTTGAACTAAGCACTGTGCTAGCAGCGAC
AGATAATTTTTCCACTTCTAATAAGCTTGGACAAGGGGGATTTGGTCCAG
TTTACAAGGGTAAGCTAGCGACTGGACAGGAGATAGCTGTCAAAAGGTTA
TCAACAACATCAGGACAAGGAATTGAGGAATTCAAAAATGAGGTCTTATT
GATAGCAAAACTTCAACACAGAAATCTTGCAAAGCTCTTGGGTTGTTGTT
TGGAAAAAGATGAAAAGATGTTAGTCTATGAGTTCATGCCTAACAAAAGC
TTGGACTACTTTATTTTTGATGAATCAAGGAAGCAATTGTTGGATTGGAA
AAGCGCTTCGATATAATTTTAGGGATAGCTCGAGGGGTCCTATATCTACA
TCAAGAT
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