FC930417

Overview
NameFC930417
Unique NameFC930417
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930417 vs. ExPASy Swiss-Prot
Match: GPI8_PONAB (GPI-anchor transamidase OS=Pongo abelii GN=PIGK PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17
Identity = 61/210 (29.05%), Postives = 100/210 (47.62%), Query Frame = 3
Query:   48 TMTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKR 659
            +++R AS +   LL++   +A            +  +A +FF +G                WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G     T  S +++ S    +I I+ + HGG G L    S  I   EL D  ++
Sbjct:    6 SLSRAASTLAAVLLLSFGSVAASH---------IEDQAEQFFRSGHTN------------NWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTGRIPPSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQ 189          
BLAST of FC930417 vs. ExPASy Swiss-Prot
Match: GPI8_HUMAN (GPI-anchor transamidase OS=Homo sapiens GN=PIGK PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.051e-16
Identity = 62/205 (30.24%), Postives = 97/205 (47.32%), Query Frame = 3
Query:   63 ASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKR 659
            A+ VL T+L+   G    S         +  +A +FF +G                WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G     T  S +++ S    +I I+ + HGG G L    S  I   EL D  ++
Sbjct:   10 AATVLATVLLLSFGSVAASH--------IEDQAEQFFRSGHTN------------NWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTGRIPPSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQ 189          
BLAST of FC930417 vs. ExPASy Swiss-Prot
Match: GPI8_BOVIN (GPI-anchor transamidase OS=Bos taurus GN=PIGK PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.051e-16
Identity = 51/149 (34.23%), Postives = 80/149 (53.69%), Query Frame = 3
Query:  231 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKR 659
            WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G   + T  S +++ S    +I I+ + HGG G L    S  I   EL D  ++
Sbjct:   46 WAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVYSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTGRIPSSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQ 189          
BLAST of FC930417 vs. ExPASy Swiss-Prot
Match: GPI8_YEAST (GPI-anchor transamidase OS=Saccharomyces cerevisiae GN=GPI8 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.793e-16
Identity = 48/145 (33.10%), Postives = 82/145 (56.55%), Query Frame = 3
Query:  231 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH-PHGDDVY-KGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKR 659
            WAVL++ S  ++NYRH A++   Y+ +++ G+ D  II+ + DD+A N  N  PG + N+  H  D+Y   V  DY G +VTVENF  ++    T     S +++ +  N +IFI+ + HGG   L    +  I ++++ D  ++
Sbjct:   39 WAVLVSTSRFWFNYRHMANVLSMYRTVKRLGIPDSQIILMLSDDVACNSRNLFPGSVFNNKDHAIDLYGDSVEVDYRGYEVTVENFIRLLTDRWTEDHPKSKRLL-TDENSNIFIYMTGHGGDDFLKFQDAEEIASEDIADAFQQ 182          
BLAST of FC930417 vs. ExPASy Swiss-Prot
Match: GPI8_CAEEL (Putative GPI-anchor transamidase OS=Caenorhabditis elegans GN=T05E11.6 PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 47/141 (33.33%), Postives = 79/141 (56.03%), Query Frame = 3
Query:  177 NGGGGAKVNDDDDSVG--TRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVY-KGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG 590
            N G   K+++  D+ G    WAVL+  S  ++NYRH +++   Y  +++ G+ D NII+ + +D+  N  NPRPG +     G ++Y   V  DY GE+VTVE+F  V+ G     T  S +++ +    ++ I+ + HGG
Sbjct:   19 NTGLQLKIDELFDTPGHTNNWAVLVCTSKFWFNYRHVSNVLALYHSIKRLGIPDSNIIMMLAEDVPCNSRNPRPGTVYAARAGTNLYGSDVEVDYRGEEVTVESFIRVLTGRHHPATPRSKRLL-TDHQSNVLIYLTGHGG 158          
BLAST of FC930417 vs. ExPASy Swiss-Prot
Match: GPI8_PIG (GPI-anchor transamidase OS=Sus scrofa GN=PIGK PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.815e-16
Identity = 51/149 (34.23%), Postives = 78/149 (52.35%), Query Frame = 3
Query:  231 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKR 659
            WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY    VTVENF  V+ G     T  S +++ S    +I I+ + HGG G L    S  I   EL D  ++
Sbjct:   46 WAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVYSHKNMELNVYGDD----VEVDYRSYVVTVENFLRVLTGRIPPSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQ 189          
BLAST of FC930417 vs. ExPASy Swiss-Prot
Match: GPI8_SCHPO (GPI-anchor transamidase OS=Schizosaccharomyces pombe GN=gpi8 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.856e-13
Identity = 44/152 (28.95%), Postives = 81/152 (53.29%), Query Frame = 3
Query:  210 DDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVII-NHPHGDDVY-KGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKR 659
            + S    WAVL++ S  ++NYRH A++   Y+ +++ G+ D  II+ + DD A N  N  PG +  N     D+Y + +  DY G +VTVE F  ++       T  S +++ +    +I I+ + HGG G +    +  + +++L D +++
Sbjct:   20 ESSHTNNWAVLISTSRFWFNYRHTANVLGIYRSVKRLGIPDSQIILMIADDYACNSRNLFPGTVFDNADRALDLYGEEIEIDYKGYEVTVEAFIRLLTERVPENTPASKRLL-TNERSNILIYMTGHGGDGFIKFQDAEELSSEDLADAIEQ 170          
The following BLAST results are available for this feature:
BLAST of FC930417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
GPI8_PONAB3.614e-1729.05GPI-anchor transamidase OS=Pongo abelii GN=PIGK PE... [more]
GPI8_HUMAN1.051e-1630.24GPI-anchor transamidase OS=Homo sapiens GN=PIGK PE... [more]
GPI8_BOVIN1.051e-1634.23GPI-anchor transamidase OS=Bos taurus GN=PIGK PE=2... [more]
GPI8_YEAST1.793e-1633.10GPI-anchor transamidase OS=Saccharomyces cerevisia... [more]
GPI8_CAEEL3.995e-1633.33Putative GPI-anchor transamidase OS=Caenorhabditis... [more]
GPI8_PIG6.815e-1634.23GPI-anchor transamidase OS=Sus scrofa GN=PIGK PE=2... [more]
GPI8_SCHPO1.856e-1328.95GPI-anchor transamidase OS=Schizosaccharomyces pom... [more]

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Properties
Property NameValue
Genbank descriptionC34007D01EF PostHarvC1 Citrus clementina cDNA clone C34007D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930417 ID=FC930417; Name=FC930417; organism=Citrus clementina; type=EST; length=713bp
GACATTTCCATAACTAGCTCCAGCAACCAATCAACCCCCTTCAAAAAACC
ATGACGCGCCTTGCCTCCGGCGTGCTAATCACGCTCCTAGTCGCTCTTGC
AGGAATCGCCGATGGAAGCAGAGACATAGCAGGTGACATTCTGAAGCTAC
CATCGGAAGCCTATAGGTTCTTCCATAATGGTGGGGGAGGGGCAAAGGTC
AACGATGATGATGATTCTGTCGGCACGAGATGGGCCGTCCTGCTTGCCGG
ATCTAATGGCTTCTGGAATTACAGGCATCAGGCTGATATTTGTCATGCTT
ATCAACTCTTGAGGAAAGGTGGGCTGAAGGATGAAAATATTATTGTTTTC
ATGTATGATGACATCGCTTTCAATGAAGAGAACCCAAGGCCTGGAGTCAT
CATTAACCACCCCCATGGCGATGATGTTTACAAAGGAGTTCCAAAGGATT
ACACGGGGGAAGATGTTACTGTTGAAAACTTTTTTGCTGTTATCCTGGGA
AATAAAACAGCTCTTACAGGGGGCAGTGGGAAGGTTGTGGATAGCGGCCC
CAATGATCATATTTTCATATTCTACTCAGATCATGGTGGCCCTGGGGTGC
TAGGGATGCCCACCAGTCGATACATATATGCTGATGAACTGATCGATGTC
TTAAAAAGAAGCATGCTTCTGGGAACTACNAAAGCTTGGTATTTTATCTC
GAAAGCTGTGAAT
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