FC930418

Overview
NameFC930418
Unique NameFC930418
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930418_ssr28 microsatellite FC930418_ssr28:28..37. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930418_ssr43 microsatellite FC930418_ssr43:43..57. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10270 contig Ccv1_Contig10270:21..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930418 vs. ExPASy Swiss-Prot
Match: RL19_BOVIN (60S ribosomal protein L19 OS=Bos taurus GN=RPL19 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.212e-56
Identity = 105/165 (63.64%), Postives = 128/165 (77.58%), Query Frame = 3
Query:   60 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 554
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of FC930418 vs. ExPASy Swiss-Prot
Match: RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.448e-55
Identity = 103/165 (62.42%), Postives = 127/165 (76.97%), Query Frame = 3
Query:   60 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 554
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG II+KP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y++ KGNVFKNKR+LME IHK KA++AR+K LSDQ EA+R+K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRSK 165          
BLAST of FC930418 vs. ExPASy Swiss-Prot
Match: RL19_DANRE (60S ribosomal protein L19 OS=Danio rerio GN=rpl19 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.292e-55
Identity = 102/165 (61.82%), Postives = 126/165 (76.36%), Query Frame = 3
Query:   60 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 554
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG II+KP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRE+KKID+HMYH +Y++ KGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIKKPVTVHSRARCRKNTLARRKGRHMGVGKRKGTANARMPEKLCWMRRMRILRRLLRRYREAKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRTK 165          
BLAST of FC930418 vs. ExPASy Swiss-Prot
Match: RL19_DICDI (60S ribosomal protein L19 OS=Dictyostelium discoideum GN=rpl19 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.704e-54
Identity = 102/166 (61.45%), Postives = 125/166 (75.30%), Query Frame = 3
Query:   60 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 557
            MVSLKLQKRL+AS+LKCG+G+VW+DPNE+ +++MANSR N+R+L+  GFI+RKP  +HSRSRAR    AKR GRH G G R GTREARLP+KI              KYRE+KKIDKH Y ++Y+K KGNVFKNKR L+E I KSK EK REK + DQ +A+R KN
Sbjct:    1 MVSLKLQKRLAASILKCGKGRVWIDPNEIADVAMANSRDNVRRLIATGFIMRKPVVVHSRSRAREHNAAKRLGRHRGAGNRLGTREARLPSKILWIRRIRVLRRLLKKYREAKKIDKHSYRELYLKAKGNVFKNKRTLIEYIVKSKTEKLREKLIQDQAQARRNKN 166          
BLAST of FC930418 vs. ExPASy Swiss-Prot
Match: RL19B_SCHPO (60S ribosomal protein L19-B OS=Schizosaccharomyces pombe GN=rpl19b PE=2 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 4.772e-51
Identity = 96/165 (58.18%), Postives = 123/165 (74.55%), Query Frame = 3
Query:   60 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 554
            M +L+ QKRL+ASVLKCG+ KVW+DPNE++EIS ANSRQNIRKLVKDG +IRKP  +HSR R R+   AKR GRH+GYGKRKGT EAR+P+ +              KYRES KIDKH+YH +Y++ KGN FK+KR L+E I ++KAE  R K + +Q +A+RA+
Sbjct:    1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRAR 165          
BLAST of FC930418 vs. ExPASy Swiss-Prot
Match: RL19_CAEEL (60S ribosomal protein L19 OS=Caenorhabditis elegans GN=rpl-19 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.233e-51
Identity = 95/166 (57.23%), Postives = 125/166 (75.30%), Query Frame = 3
Query:   60 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 557
            M +L+LQKRL+++VLKCG+ +VWLDPNEV+EIS ANSRQ+IR+LV DG IIRKP  +HSR RAR  +EA+RKGRH+GYGKR+GT  AR+P K               +YR++KK+DKH+YH++Y++ KGN FKNK+ L+E I K K E  R K L+DQ +A+R KN
Sbjct:    1 MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQAQARRDKN 166          
BLAST of FC930418 vs. ExPASy Swiss-Prot
Match: RL19A_SCHPO (60S ribosomal protein L19-A OS=Schizosaccharomyces pombe GN=rpl19a PE=1 SV=3)

HSP 1 Score: 200.29 bits (508), Expect = 8.140e-51
Identity = 94/165 (56.97%), Postives = 123/165 (74.55%), Query Frame = 3
Query:   60 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 554
            M +L+ QKRL+ASVLKCG+ KVW+DPNE++EIS ANSRQN+RKL+KDG +IRKP  +HSR R R+   AKR GRH+GYGKRKGT EAR+P+ +              KYRES KIDKH+YH +Y++ KGN FK+KR L+E I ++KAE  R K + +Q +A+RA+
Sbjct:    1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRAR 165          
BLAST of FC930418 vs. ExPASy Swiss-Prot
Match: RL19_YEAST (60S ribosomal protein L19 OS=Saccharomyces cerevisiae GN=RPL19A PE=1 SV=5)

HSP 1 Score: 186.422 bits (472), Expect = 1.216e-46
Identity = 90/166 (54.22%), Postives = 122/166 (73.49%), Query Frame = 3
Query:   60 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 557
            M +L+ QKRL+ASV+  G+ KVWLDPNE +EI+ ANSR  IRKLVK+G I++K   +HS+SR R   ++KR+GRHSGYGKRKGTREARLP+++              KYR++ KIDKH+YH +Y + KGN FK+KR L+E I ++KA+  REK L+++ EA+R KN
Sbjct:    1 MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKN 166          
BLAST of FC930418 vs. ExPASy Swiss-Prot
Match: RL19_PYRHO (50S ribosomal protein L19e OS=Pyrococcus horikoshii GN=rpl19e PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.157e-27
Identity = 60/138 (43.48%), Postives = 88/138 (63.77%), Query Frame = 3
Query:   60 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVL 473
            M +LK+Q+R++A +LKCG  +VW+DP +V+E++ A +R++IR+L+K+G I +KP +  SR RAR   E K+KGRH G G RKG + AR+  K               K +E KKID+  Y  +Y++ KG  FKNK  L
Sbjct:    1 MNTLKMQRRIAAELLKCGENRVWIDPEKVDEVASAITREDIRRLIKEGVIRKKPIEGQSRYRARIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRRELRKLKEQKKIDRKTYRMLYIRAKGGQFKNKHQL 138          
BLAST of FC930418 vs. ExPASy Swiss-Prot
Match: RL19_PYRAB (50S ribosomal protein L19e OS=Pyrococcus abyssi GN=rpl19e PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.680e-27
Identity = 60/151 (39.74%), Postives = 91/151 (60.26%), Query Frame = 3
Query:   60 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAR 512
            M +LK+Q+R++A +LKCG  ++W+DP  V++++ A +R++IR+L+K+G I +KP K  SR RAR   E K+KGRH G G RKG + AR+  K               K +E KKID+  Y  +Y++ KG  FK+K  L   + +    K R
Sbjct:    1 MKTLKMQRRVAAELLKCGENRIWIDPERVDDVASAITREDIRRLIKEGVIKKKPVKGQSRYRARIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRKELRKLKEQKKIDRRTYRMLYIRAKGGQFKSKHQLYMFLEEHNLLKKR 151          
The following BLAST results are available for this feature:
BLAST of FC930418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL19_BOVIN2.212e-5663.6460S ribosomal protein L19 OS=Bos taurus GN=RPL19 P... [more]
RL19_ICTPU5.448e-5562.4260S ribosomal protein L19 OS=Ictalurus punctatus G... [more]
RL19_DANRE9.292e-5561.8260S ribosomal protein L19 OS=Danio rerio GN=rpl19 ... [more]
RL19_DICDI2.704e-5461.4560S ribosomal protein L19 OS=Dictyostelium discoid... [more]
RL19B_SCHPO4.772e-5158.1860S ribosomal protein L19-B OS=Schizosaccharomyces... [more]
RL19_CAEEL6.233e-5157.2360S ribosomal protein L19 OS=Caenorhabditis elegan... [more]
RL19A_SCHPO8.140e-5156.9760S ribosomal protein L19-A OS=Schizosaccharomyces... [more]
RL19_YEAST1.216e-4654.2260S ribosomal protein L19 OS=Saccharomyces cerevis... [more]
RL19_PYRHO2.157e-2743.4850S ribosomal protein L19e OS=Pyrococcus horikoshi... [more]
RL19_PYRAB3.680e-2739.7450S ribosomal protein L19e OS=Pyrococcus abyssi GN... [more]

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Properties
Property NameValue
Genbank descriptionC34007D02EF PostHarvC1 Citrus clementina cDNA clone C34007D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930418 ID=FC930418; Name=FC930418; organism=Citrus clementina; type=EST; length=694bp
GACCCTTGTTGGTTGGCCACCCATCGCGAGAGAGAGAGGGGGAGAGAAGA
GAAGAGAAAATGGTGTCGTTGAAGCTACAGAAGCGGCTCTCCGCTAGCGT
CCTCAAGTGCGGACGTGGCAAGGTCTGGCTTGACCCTAATGAGGTCAACG
AAATCTCCATGGCCAACTCCAGGCAGAACATTAGGAAATTGGTGAAGGAT
GGTTTCATCATCAGGAAGCCAACAAAGATCCACTCCCGTTCTCGTGCTCG
CAGAATGAAGGAAGCCAAGAGGAAGGGCCGTCACTCTGGATATGGTAAGA
GAAAGGGTACTAGGGAGGCGAGGCTTCCCACCAAAATCCTCTGGATGAGA
AGGATGCGTGTGCTCAGGCGGTTGCTCCGCAAATACCGTGAGTCGAAGAA
AATTGACAAGCACATGTACCATGACATGTACATGAAGGTCAAGGGTAATG
TATTTAAGAACAAGCGTGTCCTCATGGAGAGTATCCACAAGTCAAAGGCT
GAGAAGGCAAGAGAGAAGACTCTTTCTGACCAGTTTGAGGCTAAGCGCGC
CAAGAACAAGGCCAGCAGGGAGAGAAAGCTGGCCAGGAGAGAAGAGCGAC
TAGCACAGGGACCTGGAGAGAAGGCAGTACCAGCACCCCAACCGGCTGAA
GGAGCTAGGAAAGCTAAGAAGTGATCGCTGATACATCGATGATG
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