FC930418

Overview
NameFC930418
Unique NameFC930418
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930418_ssr28 microsatellite FC930418_ssr28:28..37. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930418_ssr43 microsatellite FC930418_ssr43:43..57. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10270 contig Ccv1_Contig10270:21..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930418 vs. ExPASy Swiss-Prot
Match: RL19_SULSO (50S ribosomal protein L19e OS=Sulfolobus solfataricus GN=rpl19e PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 41/134 (30.60%), Postives = 64/134 (47.76%), Query Frame = 3 
Query:   60 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDG-FIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFK 458
            M +LK QKRL+AS+   G  ++ +  + + ++  + +R  IR L+KDG  I+ K   I       R K+   K      G RKG + AR  +K                 R+ K ID+H Y ++Y+K KG  +K
Sbjct:    1 MTNLKAQKRLAASIAGVGINRIKVVEDYIEDVQSSLTRDEIRNLIKDGKIIVLKKVGISGGRLKERRKKRSLKSEGKKSGSRKGKKGARANSKQMWVKRVRKIRAYLKWLRDHKVIDRHTYRELYLKTKGGNYK 134
The following BLAST results are available for this feature:
BLAST of FC930418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL19_SULSO4.828e-1130.6050S ribosomal protein L19e OS=Sulfolobus solfatari... [more]

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Properties
Property NameValue
Genbank descriptionC34007D02EF PostHarvC1 Citrus clementina cDNA clone C34007D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930418 ID=FC930418; Name=FC930418; organism=Citrus clementina; type=EST; length=694bp
GACCCTTGTTGGTTGGCCACCCATCGCGAGAGAGAGAGGGGGAGAGAAGA
GAAGAGAAAATGGTGTCGTTGAAGCTACAGAAGCGGCTCTCCGCTAGCGT
CCTCAAGTGCGGACGTGGCAAGGTCTGGCTTGACCCTAATGAGGTCAACG
AAATCTCCATGGCCAACTCCAGGCAGAACATTAGGAAATTGGTGAAGGAT
GGTTTCATCATCAGGAAGCCAACAAAGATCCACTCCCGTTCTCGTGCTCG
CAGAATGAAGGAAGCCAAGAGGAAGGGCCGTCACTCTGGATATGGTAAGA
GAAAGGGTACTAGGGAGGCGAGGCTTCCCACCAAAATCCTCTGGATGAGA
AGGATGCGTGTGCTCAGGCGGTTGCTCCGCAAATACCGTGAGTCGAAGAA
AATTGACAAGCACATGTACCATGACATGTACATGAAGGTCAAGGGTAATG
TATTTAAGAACAAGCGTGTCCTCATGGAGAGTATCCACAAGTCAAAGGCT
GAGAAGGCAAGAGAGAAGACTCTTTCTGACCAGTTTGAGGCTAAGCGCGC
CAAGAACAAGGCCAGCAGGGAGAGAAAGCTGGCCAGGAGAGAAGAGCGAC
TAGCACAGGGACCTGGAGAGAAGGCAGTACCAGCACCCCAACCGGCTGAA
GGAGCTAGGAAAGCTAAGAAGTGATCGCTGATACATCGATGATG
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