FC930427
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.805e-14 Identity = 45/144 (31.25%), Postives = 64/144 (44.44%), Query Frame = 1 Query: 307 GEPLPENVTMKDVIDSLPKKVFEIDDVKA------WKSVLLSVSSY---------ALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693 G+P + ++ D + F+I D++A W L SY AL + + W+L PL WA GT FV+GHDC H SFS LL +VG + ++ PY WR H HH + D +W P+ Sbjct: 13 GDPGAGDRKKEERFDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVYVDSWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPL 156
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14 Identity = 39/126 (30.95%), Postives = 62/126 (49.21%), Query Frame = 1 Query: 319 PENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGL-LMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693 P + ++ + +PK + D +++ V+ V A + + I W PL WA GT FV+GHDC H SFS ++LL ++VG + ++ PY WR H HH + D +W P+ Sbjct: 27 PPPFRLAEIRNVIPKHCWVKDPLRSLSYVVRDVIFVATLIGIAIHLDSWLFYPLYWAIQGTMFWAIFVLGHDCGHGSFSDSQLLNNVVGHILHSAILVPYHGWRISHKTHHQNHGNVETDESWVPM 152
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14 Identity = 43/130 (33.08%), Postives = 60/130 (46.15%), Query Frame = 1 Query: 307 GEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSY-ALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693 G P P + D+ ++PK +E +++ VL V AL IS W+ PL W GT FV+GHDC H SFS + L VG + ++ PY WR H HH + D +W P+ Sbjct: 25 GAPPPFKIA--DIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFNSWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSSKLNSFVGHILHSLILVPYNGWRISHRTHHQNHGHVEKDESWVPL 152
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13 Identity = 43/133 (32.33%), Postives = 61/133 (45.86%), Query Frame = 1 Query: 307 GEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAP----WYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693 G P P N+ D+ ++PK + + W S+ V A+ + + A W L PL W GT FV+GHDC H SFS + L + G L ++ PY WR H HH + D +WHP+ Sbjct: 84 GAPPPFNLA--DIRAAIPKHCWVKNP---WMSMSYVVRDVAIVFGLAAVAAYFNNWLLWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRLNSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPL 211
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.392e-13 Identity = 37/126 (29.37%), Postives = 59/126 (46.83%), Query Frame = 1 Query: 319 PENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSS-YALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693 P + D+ +++PK + D ++ V+ V+ + L + W + PL W T FV+GHDC H SFS + L +VG + ++ PY WR H HH + D +WHP+ Sbjct: 97 PPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVAAYFNNWVVWPLYWFAQSTMFWALFVLGHDCGHGSFSNDPKLNSVVGHILHSSILVPYHGWRISHRTHHQNHGHVENDESWHPL 222
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13 Identity = 41/123 (33.33%), Postives = 55/123 (44.72%), Query Frame = 1 Query: 370 FEIDDVKA------WKSVLLSVSSY---------ALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693 F+I D++A W L SY AL + + W+L PL W GT FV+GHDC H SFS LL +VG + ++ PY WR H HH + D +W P+ Sbjct: 31 FKIGDIRAAIPKHCWVKSPLRSMSYVTRDIFAVAALAMAAVYFDSWFLWPLYWVAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPL 153
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12 Identity = 38/132 (28.79%), Postives = 69/132 (52.27%), Query Frame = 1 Query: 331 TMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLP---------LAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPVWK 699 ++ + ++P F+ ++++ V+ ++ A L ++ ++LLP + WA G +TG +VI H+C H +FS +LL+DIVG + L+ PY W++ H +HH+ T L D + P K Sbjct: 32 SLSQIKKAIPPHCFQRSVLRSFSYVVYDLT-IAFCLYYVATHYFHLLPGPLSFRGMAIYWAVQGCILTGVWVIAHECGHHAFSDYQLLDDIVGLILHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQK 162
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12 Identity = 40/133 (30.08%), Postives = 64/133 (48.12%), Query Frame = 1 Query: 316 LPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLA--------WAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHP 690 LPE T+K++ + +P FE ++ V + ++ +L L ++ + PL W G TG +V+ H+C H+SFS +K L + VG + L+ PY WR H KHH T + D + P Sbjct: 35 LPE-FTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLFLAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVP 166
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12 Identity = 40/133 (30.08%), Postives = 64/133 (48.12%), Query Frame = 1 Query: 316 LPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLA--------WAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHP 690 LPE T+K++ + +P FE ++ V + ++ +L L ++ + PL W G TG +V+ H+C H+SFS +K L + VG + L+ PY WR H KHH T + D + P Sbjct: 35 LPE-FTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLFLAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVP 166
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11 Identity = 30/76 (39.47%), Postives = 43/76 (56.58%), Query Frame = 1 Query: 472 PLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPVWK 699 PL WA G +TG +VI H+C H +FS + L+D VG + L+ PY W++ H +HH+ T L D + P K Sbjct: 87 PLYWACQGCVLTGIWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQK 162 The following BLAST results are available for this feature:
BLAST of FC930427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930427 ID=FC930427; Name=FC930427; organism=Citrus clementina; type=EST; length=699bpback to top |