FC930427

Overview
NameFC930427
Unique NameFC930427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.805e-14
Identity = 45/144 (31.25%), Postives = 64/144 (44.44%), Query Frame = 1
Query:  307 GEPLPENVTMKDVIDSLPKKVFEIDDVKA------WKSVLLSVSSY---------ALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693
            G+P   +   ++  D   +  F+I D++A      W    L   SY         AL +  +    W+L PL WA  GT     FV+GHDC H SFS   LL  +VG +    ++ PY  WR  H  HH     +  D +W P+
Sbjct:   13 GDPGAGDRKKEERFDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVYVDSWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPL 156          
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 39/126 (30.95%), Postives = 62/126 (49.21%), Query Frame = 1
Query:  319 PENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGL-LMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693
            P    + ++ + +PK  +  D +++   V+  V   A  + + I    W   PL WA  GT     FV+GHDC H SFS ++LL ++VG +    ++ PY  WR  H  HH     +  D +W P+
Sbjct:   27 PPPFRLAEIRNVIPKHCWVKDPLRSLSYVVRDVIFVATLIGIAIHLDSWLFYPLYWAIQGTMFWAIFVLGHDCGHGSFSDSQLLNNVVGHILHSAILVPYHGWRISHKTHHQNHGNVETDESWVPM 152          
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 43/130 (33.08%), Postives = 60/130 (46.15%), Query Frame = 1
Query:  307 GEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSY-ALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693
            G P P  +   D+  ++PK  +E   +++   VL  V    AL    IS   W+  PL W   GT     FV+GHDC H SFS +  L   VG +    ++ PY  WR  H  HH     +  D +W P+
Sbjct:   25 GAPPPFKIA--DIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFNSWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSSKLNSFVGHILHSLILVPYNGWRISHRTHHQNHGHVEKDESWVPL 152          
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 43/133 (32.33%), Postives = 61/133 (45.86%), Query Frame = 1
Query:  307 GEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAP----WYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693
            G P P N+   D+  ++PK  +  +    W S+   V   A+   + + A     W L PL W   GT     FV+GHDC H SFS +  L  + G L    ++ PY  WR  H  HH     +  D +WHP+
Sbjct:   84 GAPPPFNLA--DIRAAIPKHCWVKNP---WMSMSYVVRDVAIVFGLAAVAAYFNNWLLWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRLNSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPL 211          
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.392e-13
Identity = 37/126 (29.37%), Postives = 59/126 (46.83%), Query Frame = 1
Query:  319 PENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSS-YALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693
            P    + D+ +++PK  +  D  ++   V+  V+  + L  +      W + PL W    T     FV+GHDC H SFS +  L  +VG +    ++ PY  WR  H  HH     +  D +WHP+
Sbjct:   97 PPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVAAYFNNWVVWPLYWFAQSTMFWALFVLGHDCGHGSFSNDPKLNSVVGHILHSSILVPYHGWRISHRTHHQNHGHVENDESWHPL 222          
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 41/123 (33.33%), Postives = 55/123 (44.72%), Query Frame = 1
Query:  370 FEIDDVKA------WKSVLLSVSSY---------ALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693
            F+I D++A      W    L   SY         AL +  +    W+L PL W   GT     FV+GHDC H SFS   LL  +VG +    ++ PY  WR  H  HH     +  D +W P+
Sbjct:   31 FKIGDIRAAIPKHCWVKSPLRSMSYVTRDIFAVAALAMAAVYFDSWFLWPLYWVAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPL 153          
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 38/132 (28.79%), Postives = 69/132 (52.27%), Query Frame = 1
Query:  331 TMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLP---------LAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPVWK 699
            ++  +  ++P   F+   ++++  V+  ++  A  L  ++   ++LLP         + WA  G  +TG +VI H+C H +FS  +LL+DIVG +    L+ PY  W++ H +HH+ T  L  D  + P  K
Sbjct:   32 SLSQIKKAIPPHCFQRSVLRSFSYVVYDLT-IAFCLYYVATHYFHLLPGPLSFRGMAIYWAVQGCILTGVWVIAHECGHHAFSDYQLLDDIVGLILHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQK 162          
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 40/133 (30.08%), Postives = 64/133 (48.12%), Query Frame = 1
Query:  316 LPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLA--------WAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHP 690
            LPE  T+K++ + +P   FE   ++    V + ++  +L  L  ++   +  PL         W   G   TG +V+ H+C H+SFS +K L + VG +    L+ PY  WR  H KHH  T  +  D  + P
Sbjct:   35 LPE-FTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLFLAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVP 166          
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 40/133 (30.08%), Postives = 64/133 (48.12%), Query Frame = 1
Query:  316 LPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLA--------WAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHP 690
            LPE  T+K++ + +P   FE   ++    V + ++  +L  L  ++   +  PL         W   G   TG +V+ H+C H+SFS +K L + VG +    L+ PY  WR  H KHH  T  +  D  + P
Sbjct:   35 LPE-FTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLFLAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVP 166          
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 30/76 (39.47%), Postives = 43/76 (56.58%), Query Frame = 1
Query:  472 PLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPVWK 699
            PL WA  G  +TG +VI H+C H +FS  + L+D VG +    L+ PY  W++ H +HH+ T  L  D  + P  K
Sbjct:   87 PLYWACQGCVLTGIWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQK 162          
The following BLAST results are available for this feature:
BLAST of FC930427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
FAD3E_ARATH2.805e-1431.25Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_TOBAC6.249e-1430.95Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_PHAAU6.249e-1433.08Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3D_ARATH1.066e-1332.33Temperature-sensitive omega-3 fatty acid desaturas... [more]
FAD3C_SESIN1.392e-1329.37Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3E_BRANA3.102e-1333.33Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FD6E2_SOYBN3.429e-1228.79Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_MORIS3.429e-1230.08Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD12_MORAP3.429e-1230.08Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD6E_ARATH3.791e-1139.47Omega-6 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionC34007D11EF PostHarvC1 Citrus clementina cDNA clone C34007D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930427 ID=FC930427; Name=FC930427; organism=Citrus clementina; type=EST; length=699bp
GGGAATTTCTGCATTTCTCTTGCTCAAAACATAATGGCTTGCAGACTTGC
AGATTCTATGTTCCTTTTCATGGGCCCCCATCAAAGGCCAACTGGGAGTC
AGAAAATTGGATGCTTTAGTTCACCTGGCCTTTGTCAGCTGAAGTGGGAG
AGTCTTCTTGTGAAGGGAGTTAAGCACAAAAGATGTTCAATTCCCTCTCG
AGGGACTAGATTTATACAGGCTGTGGCCGTTCCAGTTGCACCACCTTCAG
AAGACAGTGCGGATTGTAGAAAGCAGATAGCAGAAAGTTATGGGTTTAGG
CAAATCGGAGAGCCACTGCCTGAAAATGTGACAATGAAGGATGTCATTGA
TTCTCTCCCAAAAAAGGTATTTGAGATTGATGATGTGAAAGCATGGAAGT
CTGTTTTATTATCCGTCAGTTCATATGCGTTGGGGCTTCTCATGATCTCA
AAGGCCCCATGGTATTTGCTTCCTTTGGCTTGGGCATGGACAGGGACTGC
GGTCACAGGGTTCTTTGTTATAGGCCATGATTGTGCCCACAAATCATTTT
CGAAGAACAAGTTACTGGAAGACATCGTGGGAACCCTGGCCTTTCTGCCA
CTGATATACCCATATGAACCCTGGCGGTTTAAGCACGGCAAGCATCATGC
CAAAACAAACATGCTGAACGGAGATACAGCTTGGCATCCTGTTTGGAAG
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