FC930427

Overview
NameFC930427
Unique NameFC930427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 29/73 (39.73%), Postives = 43/73 (58.90%), Query Frame = 1
Query:  472 PLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHP 690
            PL W    + +TG +VIGH+C H +FS  + ++D VG +    L+ PY  W++ H  HHA TN L+ D  + P
Sbjct:   80 PLYWFCQASILTGLWVIGHECGHHAFSDYQWVDDTVGFILHSFLMTPYFSWKYSHRNHHANTNSLDNDEVYIP 152          
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = 1
Query:  472 PLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHP 690
            PL WA  G  +TG +VI H+C H +FS  + L+D VG +    L+ PY  W++ H +HH+ T  L  D  + P
Sbjct:   87 PLYWACQGVVLTGVWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVP 159          
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 1
Query:  472 PLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHP 690
            P+ W   G  +TG +VI H+C H +FSK + ++D+VG      L+ PY  W+  H +HH+ T  L+ D  + P
Sbjct:   91 PIYWVLQGCLLTGVWVIAHECGHHAFSKYQWVDDVVGLTLHSTLLVPYFSWKISHRRHHSNTGSLDRDEVFVP 163          
The following BLAST results are available for this feature:
BLAST of FC930427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
FAD12_CREAL3.791e-1139.73Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FAD6E_BRAJU4.952e-1139.73Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN8.446e-1136.99Omega-6 fatty acid desaturase, endoplasmic reticul... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34007D11EF PostHarvC1 Citrus clementina cDNA clone C34007D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930427 ID=FC930427; Name=FC930427; organism=Citrus clementina; type=EST; length=699bp
GGGAATTTCTGCATTTCTCTTGCTCAAAACATAATGGCTTGCAGACTTGC
AGATTCTATGTTCCTTTTCATGGGCCCCCATCAAAGGCCAACTGGGAGTC
AGAAAATTGGATGCTTTAGTTCACCTGGCCTTTGTCAGCTGAAGTGGGAG
AGTCTTCTTGTGAAGGGAGTTAAGCACAAAAGATGTTCAATTCCCTCTCG
AGGGACTAGATTTATACAGGCTGTGGCCGTTCCAGTTGCACCACCTTCAG
AAGACAGTGCGGATTGTAGAAAGCAGATAGCAGAAAGTTATGGGTTTAGG
CAAATCGGAGAGCCACTGCCTGAAAATGTGACAATGAAGGATGTCATTGA
TTCTCTCCCAAAAAAGGTATTTGAGATTGATGATGTGAAAGCATGGAAGT
CTGTTTTATTATCCGTCAGTTCATATGCGTTGGGGCTTCTCATGATCTCA
AAGGCCCCATGGTATTTGCTTCCTTTGGCTTGGGCATGGACAGGGACTGC
GGTCACAGGGTTCTTTGTTATAGGCCATGATTGTGCCCACAAATCATTTT
CGAAGAACAAGTTACTGGAAGACATCGTGGGAACCCTGGCCTTTCTGCCA
CTGATATACCCATATGAACCCTGGCGGTTTAAGCACGGCAAGCATCATGC
CAAAACAAACATGCTGAACGGAGATACAGCTTGGCATCCTGTTTGGAAG
back to top