FC930440

Overview
NameFC930440
Unique NameFC930440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930440 vs. ExPASy Swiss-Prot
Match: ARL3_RAT (ADP-ribosylation factor-like protein 3 OS=Rattus norvegicus GN=Arl3 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.929e-39
Identity = 80/158 (50.63%), Postives = 109/158 (68.99%), Query Frame = 2
Query:  134 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 607
            +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP WR YF+NT  LI+V+DS DR R  E   EL  +L E++L    +LVFANKQDL  A  AAEI + L LH++R R W IQS  A +GEG+ +G++W+
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLVFANKQDLLTAAPAAEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 173          
BLAST of FC930440 vs. ExPASy Swiss-Prot
Match: ARL3_BOVIN (ADP-ribosylation factor-like protein 3 OS=Bos taurus GN=ARL3 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.929e-39
Identity = 78/158 (49.37%), Postives = 110/158 (69.62%), Query Frame = 2
Query:  134 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 607
            +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP WR+YF+NT  LI+V+DS DR R  E   EL  +L E++L    +L+FANKQDL  A  A+EI + L LH++R R W IQS  A +GEG+ +G++W+
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRFWQIQSCSALTGEGVQDGMNWV 173          
BLAST of FC930440 vs. ExPASy Swiss-Prot
Match: ARL3_XENLA (ADP-ribosylation factor-like protein 3 OS=Xenopus laevis GN=arl3 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.520e-39
Identity = 77/158 (48.73%), Postives = 111/158 (70.25%), Query Frame = 2
Query:  134 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 607
            +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP WR+YF+NT  LI+V+DS DR R  E   EL  +L+E++L    +L+FANKQDL  A  A+EI + L LH++R R W IQS  A +G+G+ +G++W+
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGQGVQDGMNWV 173          
BLAST of FC930440 vs. ExPASy Swiss-Prot
Match: ARL3_PIG (ADP-ribosylation factor-like protein 3 OS=Sus scrofa GN=ARL3 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.291e-39
Identity = 78/158 (49.37%), Postives = 110/158 (69.62%), Query Frame = 2
Query:  134 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 607
            +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP WR+YF+NT  LI+V+DS DR R  E   EL  +L E++L    +L+FANKQDL  A  A+EI + L LH++R R W IQS  A +GEG+ +G++W+
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 173          
BLAST of FC930440 vs. ExPASy Swiss-Prot
Match: ARL2_CAEEL (ADP-ribosylation factor-like protein 2 OS=Caenorhabditis elegans GN=evl-20 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.291e-39
Identity = 80/173 (46.24%), Postives = 118/173 (68.21%), Query Frame = 2
Query:   95 LSFTKLFSRLFAK-KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 607
            + F K+  +  A+ +EMRIL++GLD AGKTT++ K  L E   TI PT+GF+++TV +K+    +WDVGGQ  +R  W++YF++T  LI+VVDS+DR+R+++  +EL ++L E+ L  A LLV ANK DLP A++   I   L LHS++  HW I S CA SG+ L + + WL
Sbjct:    1 MGFLKILRKQRAREREMRILILGLDNAGKTTLMKKF-LDEPTDTIEPTLGFDIKTVHFKDFQLNLWDVGGQKSLRSYWKNYFESTDALIWVVDSSDRERLLQCSEELKKLLGEERLAGASLLVLANKSDLPGAIDVNSIAQVLDLHSIKSHHWKIFSCCALSGDRLVQAMTWL 172          
BLAST of FC930440 vs. ExPASy Swiss-Prot
Match: ARL3_MOUSE (ADP-ribosylation factor-like protein 3 OS=Mus musculus GN=Arl3 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.613e-39
Identity = 78/158 (49.37%), Postives = 109/158 (68.99%), Query Frame = 2
Query:  134 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 607
            +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP WR YF+NT  LI+V+DS DR R  E   EL  +L E++L    +L+FANKQDL  A  A+EI + L LH++R R W IQS  A +GEG+ +G++W+
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 173          
BLAST of FC930440 vs. ExPASy Swiss-Prot
Match: ARL3_HUMAN (ADP-ribosylation factor-like protein 3 OS=Homo sapiens GN=ARL3 PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 7.331e-39
Identity = 77/158 (48.73%), Postives = 110/158 (69.62%), Query Frame = 2
Query:  134 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 607
            +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP W++YF+NT  LI+V+DS DR R  E   EL  +L E++L    +L+FANKQDL  A  A+EI + L LH++R R W IQS  A +GEG+ +G++W+
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 173          
BLAST of FC930440 vs. ExPASy Swiss-Prot
Match: ARL2_DICDI (ADP-ribosylation factor-like protein 2 OS=Dictyostelium discoideum GN=arl2 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.786e-38
Identity = 75/159 (47.17%), Postives = 105/159 (66.04%), Query Frame = 2
Query:  131 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 607
            +KE+RILM+GLD AGKTTIL K    +I T  PT+GFN++T+ YK     +WD+GGQ  +R  WR+Y++    +I+V+DS+D  R+ + + EL ++L E++   A  LVFANKQDL  AM + EI+  L L  L   HW I S  A +G GL EG+DW+
Sbjct:   14 EKELRILMLGLDNAGKTTILKKFNGEDISTISPTLGFNIQTLMYKEYKLNIWDIGGQKTLRSYWRNYYEENDAVIWVIDSSDIRRIDDCKFELKKLLEEEKFAGASFLVFANKQDLDGAMTSEEISKYLDLEQLNTHHWEIMSCSAVTGLGLEEGIDWV 172          
BLAST of FC930440 vs. ExPASy Swiss-Prot
Match: ARL2_CAEBR (ADP-ribosylation factor-like protein 2 OS=Caenorhabditis briggsae GN=evl-20.1 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.786e-38
Identity = 80/173 (46.24%), Postives = 116/173 (67.05%), Query Frame = 2
Query:   95 LSFTKLFSRLFAK-KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 607
            + F K+  +  A+ +EMRIL++GLD AGKTT++ K  L E   TI PT+GF+++TV +K+    +WDVGGQ  +R  W++YF++T  LI+VVDS+DR+R+ +  +EL ++L E+ L  A LLV ANK DLP A++   I   L L S++  HW I S CA SGE L + + WL
Sbjct:    1 MGFLKILRKQRAREREMRILILGLDNAGKTTLMKKF-LDEPTDTIEPTLGFDIKTVHFKDFQLNLWDVGGQKSLRSYWKNYFESTDALIWVVDSSDRERLTQCSEELKKLLQEERLSGASLLVLANKSDLPGAIDVNSIAQVLELQSIKTHHWKIFSCCALSGERLVQAMTWL 172          
BLAST of FC930440 vs. ExPASy Swiss-Prot
Match: ARL3_CAEEL (ADP-ribosylation factor-like protein 3 OS=Caenorhabditis elegans GN=arl-3 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.105e-38
Identity = 79/164 (48.17%), Postives = 111/164 (67.68%), Query Frame = 2
Query:  134 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSTTLQ 622
            +E+RIL++GLD AGKTTIL +L   ++    PT GFNV+TV    +I   VWD+GGQ  IRP W +Y++N   LIFV+DSND+ R  E   EL  +L+E++LR   +L+FANKQDL  A ++ EIT KL L  LR R W+IQ+  A   EG+ +G+ W+++ L+
Sbjct:   16 REIRILLLGLDNAGKTTILKQLSSEDVQHVTPTKGFNVKTVAAMGDIRLNVWDIGGQRSIRPYWSNYYENIDTLIFVIDSNDKKRFDEMNIELGELLDEEKLRKVPVLIFANKQDLVTAASSEEITRKLNLDLLRDRTWHIQACSALKNEGINDGITWVASNLK 179          
The following BLAST results are available for this feature:
BLAST of FC930440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARL3_RAT1.929e-3950.63ADP-ribosylation factor-like protein 3 OS=Rattus n... [more]
ARL3_BOVIN1.929e-3949.37ADP-ribosylation factor-like protein 3 OS=Bos taur... [more]
ARL3_XENLA2.520e-3948.73ADP-ribosylation factor-like protein 3 OS=Xenopus ... [more]
ARL3_PIG3.291e-3949.37ADP-ribosylation factor-like protein 3 OS=Sus scro... [more]
ARL2_CAEEL3.291e-3946.24ADP-ribosylation factor-like protein 2 OS=Caenorha... [more]
ARL3_MOUSE5.613e-3949.37ADP-ribosylation factor-like protein 3 OS=Mus musc... [more]
ARL3_HUMAN7.331e-3948.73ADP-ribosylation factor-like protein 3 OS=Homo sap... [more]
ARL2_DICDI2.786e-3847.17ADP-ribosylation factor-like protein 2 OS=Dictyost... [more]
ARL2_CAEBR2.786e-3846.24ADP-ribosylation factor-like protein 2 OS=Caenorha... [more]
ARL3_CAEEL8.105e-3848.17ADP-ribosylation factor-like protein 3 OS=Caenorha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34007F01EF PostHarvC1 Citrus clementina cDNA clone C34007F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930440 ID=FC930440; Name=FC930440; organism=Citrus clementina; type=EST; length=702bp
GGAAGGACAGCTCTTATTTTTATAGAGAGAGAGAGGGGCAGTAGATCTGC
ACCAAGGCAAAAACCGCTCTCTTCCTCAGTTGTGAAAAATGGGGCTGTCT
TTCACCAAGCTTTTCAGCAGGCTTTTTGCTAAGAAAGAGATGAGAATTCT
CATGGTAGGTCTCGATGCAGCTGGTAAGACTACTATCCTGTACAAGCTTA
AGCTCGGAGAGATCGTCACCACCATTCCTACCATTGGATTTAATGTAGAG
ACCGTTGAGTATAAGAACATCAGCTTTACTGTCTGGGATGTCGGGGGTCA
AGACAAGATCCGACCTTTGTGGAGACATTATTTCCAAAACACCCAAGGAC
TCATCTTTGTGGTTGACAGTAATGATCGCGACCGTGTGGTAGAAGCTAGG
GATGAGTTGCACAGAATGTTGAATGAGGATGAATTGAGAGATGCTGTGCT
GCTTGTATTTGCTAACAAGCAAGATCTTCCAAATGCAATGAATGCTGCTG
AGATAACTGACAAGCTTGGCCTTCACTCTCTTCGCCAGCGCCACTGGTAT
ATCCAGAGCACATGTGCCACTTCTGGTGAAGGGCTGTATGAGGGACTTGA
CTGGCTCTCAACAACATTGCAAACAGGCATAGACACTAAATTTTGAGTTT
TGGTTGCCGCACTGCTGAAATCAGAGTTAACACACATCTCAGTGGTCTTT
GC
back to top