FC930444

Overview
NameFC930444
Unique NameFC930444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP3_ARATH (Phosphoenolpyruvate carboxylase 3 OS=Arabidopsis thaliana GN=PPC3 PE=2 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 4.969e-57
Identity = 115/243 (47.33%), Postives = 154/243 (63.37%), Query Frame = 2
Query:    8 SDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SD  G Y+ISMA++ SDVLAVELLQ++  +              LRVVPLFE + DL  A   + +L SIDWY+  I    NG QEVM+GYSDSGKDAGR +AAWELYKAQE++V    ++G+K+T+FH           PT+LAI SQPP +V G+LR T QGE+++  FG      R L+ +T A L   M PP  P+ E WR L++E++ ++ + YRS V++ P F+ YF  ATP+ E G
Sbjct:  523 SDCFGAYIISMATSPSDVLAVELLQRECHVK-----------NPLRVVPLFEKLADLEAAPAAVARLFSIDWYKNRI----NGKQEVMIGYSDSGKDAGRLSAAWELYKAQEELVKVAKKYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTVNGSLRVTVQGEVIEQSFGEAHLCFRTLQRFTAATLEHGMNPPISPKPE-WRALLDEMAVVATEEYRSVVFQEPRFVEYFRLATPELEYG 749          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP2_SOYBN (Phosphoenolpyruvate carboxylase OS=Glycine max GN=PPC1 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.475e-57
Identity = 115/242 (47.52%), Postives = 154/242 (63.64%), Query Frame = 2
Query:   11 DSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            D+ G Y+ISMA+  SDVLAVELLQ++  +              LRVVPLFE + DL  A   + +L SIDWYR  I    NG QEVM+GYSDSGKDAGRF+AAW+LYKAQE+++    +FG+K+T+FH           PT+LAI SQPP ++ G+LR T QGE+++  FG      R L+ +T A L   M PP  P+ E WR LM++++ I+ + YRS V++ P F+ YF  ATP+ E G
Sbjct:  523 DNFGAYIISMATAPSDVLAVELLQRECHIK-----------HPLRVVPLFEKLADLEAAPAALARLFSIDWYRNRI----NGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELINVAKKFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEQHLCFRTLQRFTAATLEHGMHPPISPKPE-WRALMDQMAVIATEEYRSIVFKEPRFVEYFRLATPELEYG 748          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_PICAB (Phosphoenolpyruvate carboxylase OS=Picea abies GN=PPC PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.107e-56
Identity = 115/243 (47.33%), Postives = 155/243 (63.79%), Query Frame = 2
Query:    8 SDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            +D+ G Y+ISMA+ ASDVL VELLQ++  +       +P     LRVVPLFE + DL  A   + +L SI+WYR  I    +G QEVM+GYSDSGKDAGR +A W LYKAQED++    EFGIK+T+FH           PT+LAI SQPP ++ G+ R T QGE+++  FG      R L+ +T A L   MRPP  P+ E WR LM+E++ ++ + YRS V+++P F+ YF  ATP+ E G
Sbjct:  520 ADNFGAYIISMATAASDVLVVELLQRECHVK------KP-----LRVVPLFEKLADLEAAPAALARLFSINWYRNRI----DGKQEVMIGYSDSGKDAGRLSAGWALYKAQEDLIKVAKEFGIKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSFRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPVAPKPE-WRELMDEMAVVATKEYRSIVFQDPRFVEYFRSATPELEYG 746          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP1_SOYBN (Phosphoenolpyruvate carboxylase, housekeeping isozyme OS=Glycine max GN=PPC16 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.107e-56
Identity = 114/242 (47.11%), Postives = 154/242 (63.64%), Query Frame = 2
Query:   11 DSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            D+ G Y+ISMA+  SDVLAVELLQ++  +              LRVVPLFE + DL  A   + +L S+DWYR  I    NG QEVM+GYSDSGKDAGRF+AAW+LYKAQE+++    ++G+K+T+FH           PT+LAI SQPP ++ G+LR T QGE+++  FG      R L+ +T A L   M PP  P+ E WR LM+E++ I+ + YRS V++ P F+ YF  ATP+ E G
Sbjct:  523 DNFGAYIISMATAPSDVLAVELLQRECHVK-----------HPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRI----NGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIMVAKQYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPETIHGSLRVTVQGEVIEQSFGEQHLCFRTLQRFTAATLEHGMHPPISPKPE-WRALMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYG 748          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP1_SACHY (Phosphoenolpyruvate carboxylase, housekeeping isozyme OS=Saccharum hybrid PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.107e-56
Identity = 117/243 (48.15%), Postives = 156/243 (64.20%), Query Frame = 2
Query:    8 SDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SDS G YVISMA+  SDVLAVELLQ++  +       +P     LRVVPLFE + DL  A   + +L S++WYR  I    NG QEVM+GYSDSGKDAGRF+AAW+LYKAQE+++     +G+K+T+FH           PT+LAI SQPP ++ G+LR T QGE+++  FG      R L+ +T A L   M PP  P+ E WR LM+E++ ++ + YRS V+E P F+ YF  ATP+ E G
Sbjct:  521 SDSFGAYVISMATAPSDVLAVELLQRECHVK------KP-----LRVVPLFEKLADLEAAPAALARLFSVEWYRNRI----NGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELINVAKLYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPETIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPISPKPE-WRALMDEMAIVATKEYRSIVFEEPRFVEYFRLATPEMEYG 747          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SHELP (Phosphoenolpyruvate carboxylase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=ppc PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.446e-56
Identity = 124/241 (51.45%), Postives = 151/241 (62.66%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            +LG YVISMAS  SDVL V LL K+A        G   P   +RVVPLFET+ DL  A   I  L +IDWYR +      G QEVM+GYSDS KDAG   AAW  Y AQE +V  CN+  IK+TLFH           P + AI SQPPGSV G +R TEQGEM++ KFGLP+ AV+ L +YT+AV+ AT+ PP  P+ E WR  ME ++  S   YR+ V E P+F+AYF  ATP+ ELG
Sbjct:  467 ALGSYVISMASQPSDVLTVLLLLKEA--------GCQHP---MRVVPLFETLEDLNNAASCISALFAIDWYRGYC----KGSQEVMIGYSDSAKDAGVMAAAWAQYSAQEKLVKVCNQADIKLTLFHGRGGTIGRGGGPAHKAILSQPPGSVDGRIRVTEQGEMIRFKFGLPKLAVQSLALYTSAVMEATLLPPPEPKPE-WREAMERLASDSVTAYRAIVREEPDFVAYFRAATPEVELG 691          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_MARAV (Phosphoenolpyruvate carboxylase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ppc PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.446e-56
Identity = 116/242 (47.93%), Postives = 157/242 (64.88%), Query Frame = 2
Query:   11 DSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            ++LG YVISMAS  SDVL V LL ++A +A             +RVVPLFET+ DL+GA   +  L  +DWYR++     +G QEVM+GYSDS KDAG+  AAW  Y+AQE +    N +G+ +TLFH           P   AI SQPPGSV G+ R TEQGEM++ KFGLP+ AV+ L +YTTAV+ AT+ PP  P++E WR +M+ +++ S ++YR  V ENP+F+ YF + TP+  LG
Sbjct:  465 EALGSYVISMASKPSDVLNVILLLREAGMAFP-----------MRVVPLFETLDDLKGAPDSMAALYEVDWYREYC----SGRQEVMIGYSDSSKDAGQLMAAWAQYQAQEKLTEVANRYGVHLTLFHGRGGTVGRGGGPANRAILSQPPGSVNGSFRITEQGEMIRFKFGLPRLAVQSLTLYTTAVIEATLAPPPVPKDE-WREVMDWLTERSLRSYREVVRENPDFVPYFRQVTPETALG 690          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP2_ARATH (Phosphoenolpyruvate carboxylase 2 OS=Arabidopsis thaliana GN=PPC2 PE=1 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.446e-56
Identity = 116/243 (47.74%), Postives = 152/243 (62.55%), Query Frame = 2
Query:    8 SDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SDS G Y+ISMA+  SDVLAVELLQ++  +              LRVVPLFE + DL  A   + +L SI+WYR  I    NG QEVM+GYSDSGKDAGR +AAW+LYK QE++V    E+G+K+T+FH           PT+LAI SQPP ++ G LR T QGE+++  FG      R L+ +T A L   M PP  P+ E WR LM+E++ I+ + YRS V++ P F+ YF  ATP+ E G
Sbjct:  519 SDSFGAYIISMATAPSDVLAVELLQRECGIT-----------DPLRVVPLFEKLADLESAPAAVARLFSIEWYRNRI----NGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKEYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGQLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPVSPKPE-WRVLMDEMAIIATEEYRSVVFKEPRFVEYFRLATPELEYG 745          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP1_FLAPR (Phosphoenolpyruvate carboxylase OS=Flaveria pringlei GN=PPCA1 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.446e-56
Identity = 114/243 (46.91%), Postives = 153/243 (62.96%), Query Frame = 2
Query:    8 SDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SD  G Y+ISMA++ SDVLAVELLQ++  +              LRVVPLFE + DL  A   + +L SIDWYR  I    +G QEVM+GYSDSGKDAGRF+AAW+LYKAQE+++    EFG+K+ +FH           PT+LAI SQPP ++ G+LR T QGE+++  FG      R L+ +  A L   M PP  PR E WR LM++++ ++ + YRS V++ P F+ YF  ATP+ E G
Sbjct:  521 SDCFGAYIISMATSPSDVLAVELLQRECHVK-----------HPLRVVPLFEKLADLEAAPAAMARLFSIDWYRNRI----DGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEEIIKVAKEFGVKLVIFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPE-WRELMDQMAVVATEEYRSIVFKEPRFVEYFRLATPELEYG 747          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_TOBAC (Phosphoenolpyruvate carboxylase OS=Nicotiana tabacum GN=PPC PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.888e-56
Identity = 117/243 (48.15%), Postives = 152/243 (62.55%), Query Frame = 2
Query:    8 SDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SD  G Y+ISMA+  SDVLAVELLQ++  +              LRVVPLFE + DL  A   + +L SI+WYR  I    NG QEVMVGYSDSGKDAGRF+AAW+LYKAQE+++    E G+K+T+FH           PT+LAI SQPP ++ G+LR T QGE+++  FG      R L+ +T A L   M PP  P+ E WR LM+EI+ I+ + YRS V++ P F+ Y   ATP+ E G
Sbjct:  520 SDCFGAYIISMATAPSDVLAVELLQRECHVKQP-----------LRVVPLFEKLDDLESASAAVARLFSIEWYRNRI----NGKQEVMVGYSDSGKDAGRFSAAWQLYKAQEELIKVAKEHGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIQGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPVSPKPE-WRALMDEIAVIATEKYRSIVFKEPRFVEYSALATPELEYG 746          
The following BLAST results are available for this feature:
BLAST of FC930444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP3_ARATH4.969e-5747.33Phosphoenolpyruvate carboxylase 3 OS=Arabidopsis t... [more]
CAPP2_SOYBN8.475e-5747.52Phosphoenolpyruvate carboxylase OS=Glycine max GN=... [more]
CAPP_PICAB1.107e-5647.33Phosphoenolpyruvate carboxylase OS=Picea abies GN=... [more]
CAPP1_SOYBN1.107e-5647.11Phosphoenolpyruvate carboxylase, housekeeping isoz... [more]
CAPP1_SACHY1.107e-5648.15Phosphoenolpyruvate carboxylase, housekeeping isoz... [more]
CAPP_SHELP1.446e-5651.45Phosphoenolpyruvate carboxylase OS=Shewanella loih... [more]
CAPP_MARAV1.446e-5647.93Phosphoenolpyruvate carboxylase OS=Marinobacter aq... [more]
CAPP2_ARATH1.446e-5647.74Phosphoenolpyruvate carboxylase 2 OS=Arabidopsis t... [more]
CAPP1_FLAPR1.446e-5646.91Phosphoenolpyruvate carboxylase OS=Flaveria pringl... [more]
CAPP_TOBAC1.888e-5648.15Phosphoenolpyruvate carboxylase OS=Nicotiana tabac... [more]

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Properties
Property NameValue
Genbank descriptionC34007F05EF PostHarvC1 Citrus clementina cDNA clone C34007F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930444 ID=FC930444; Name=FC930444; organism=Citrus clementina; type=EST; length=736bp
GGGAGGGAGTGATTCACTTGGGCCATACGTCATTTCTATGGCTTCTAATG
CAAGTGATGTCCTTGCCGTAGAGCTTTTGCAGAAAGACGCCCGACTTGCT
GTTAGTGGTGAGTTAGGGAGACCATGTCCTGGTGGAACGCTACGTGTGGT
TCCTCTGTTTGAGACTGTGACGGACTTGAGAGGAGCTGGTTTGGTGATCA
GGAAATTGTTATCAATTGACTGGTATAGAAAGCACATTATAAAAAACCAT
AACGGGCATCAAGAGGTGATGGTTGGATATTCTGATTCTGGTAAAGATGC
TGGACGCTTCACTGCTGCATGGGAACTATACAAAGCCCAAGAGGATGTTG
TGGCTGCCTGCAATGAGTTTGGTATTAAAGTGACTCTTTTCCATGGGCGA
GGAGGGAGTATTGGCCGTGGTGGTGGCCCTACATATCTTGCCATTCAGTC
TCAACCGCCTGGCTCTGTAATGGGAACACTTCGATCGACTGAGCAAGGGG
AGATGGTGCAGGCCAAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTA
GAGATATACACAACTGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACC
TCCTCGAGAAGAAAAATGGCGTAATCTCATGGAGGAGATCTCAAAAATTA
GTTGCCAGAATTACCGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCC
TACTTTCACGAGGCTACACCCCAGGCTGAACTAGGG
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