FC930444

Overview
NameFC930444
Unique NameFC930444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_CHRSD (Phosphoenolpyruvate carboxylase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=ppc PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.160e-52
Identity = 116/242 (47.93%), Postives = 148/242 (61.16%), Query Frame = 2
Query:   11 DSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            ++LG YVISMA   SDVLAV LL K+    V G+L  P       + PLFET+ DL  AG VI +LLS+  YR+         QEVM+GYSDS KDAG+  AAW  Y+AQE +V  C +  + +TLFH           P + AI SQPPGSV G+LR TEQGEM++ KFG P  A+R +EIY  AVL AT+ PP  P E  WR  M+ +S I+ + Y   V E+P+F+ YF   TP++ LG
Sbjct:  468 EALGTYVISMAGQPSDVLAVALLMKE----VGGDLQLP-------IAPLFETLDDLNRAGDVIERLLSLPGYRRMA----GDGQEVMIGYSDSAKDAGQLAAAWAQYRAQEQLVGICRQHDVALTLFHGRGGTVGRGGGPAHAAILSQPPGSVNGSLRVTEQGEMIRFKFGQPDIALRSMEIYACAVLEATLLPPPDP-EPVWREEMDRLSDIAHRAYVGVVREDPDFVPYFRSVTPESALG 693          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_PSYIN (Phosphoenolpyruvate carboxylase OS=Psychromonas ingrahamii (strain 37) GN=ppc PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.685e-52
Identity = 114/242 (47.11%), Postives = 148/242 (61.16%), Query Frame = 2
Query:   11 DSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            ++LG Y+ISMA  ASDVLAV+L+ K        E+G P     + V PLFET+ DL  +  V+++L +IDWYR +I    NG Q VM+GYSDS KDAG   A W  Y +QE +V    E  I + LFH           P   A+ SQPPGS+ G LR TEQGEM++ KFGLP+ AV+ L  Y  AVL A + PP  P++E WR++M++ S  SCQ YR  V E P+F+ YF   TP+ ELG
Sbjct:  465 EALGIYIISMARQASDVLAVQLILK--------EVGCPF---RIPVAPLFETLDDLNNSAAVMKRLFAIDWYRGYI----NGIQHVMIGYSDSAKDAGVIAANWAQYTSQEALVKLSAENDINLVLFHGRGGTIGRGGAPARQALLSQPPGSLKGGLRVTEQGEMIRFKFGLPKVAVQSLNQYAAAVLEANLLPPPAPKQE-WRDVMQQFSDQSCQEYRHFVREEPDFVPYFRSVTPEVELG 690          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_VIBPA (Phosphoenolpyruvate carboxylase OS=Vibrio parahaemolyticus GN=ppc PE=3 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 4.813e-52
Identity = 112/242 (46.28%), Postives = 148/242 (61.16%), Query Frame = 2
Query:   11 DSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            ++ G YVISMA  ASDVLAV LL ++A           CP   + V PLFET+ DL  A  VI++L+SID YR  I      HQ VM+GYSDS KDAG  +A W  Y A E +V    + G+++TLFH           P + A+ SQPP S+ G LR TEQGEM++ K GLP  AV    +Y +A+L A + PP  P++E WR+LME +S++SC+ YR  V   P+F+ YF +ATP+ ELG
Sbjct:  465 EAFGAYVISMARTASDVLAVHLLLQEAG----------CPY-RMDVCPLFETLDDLNNAESVIKQLMSIDLYRGFI----QNHQMVMIGYSDSAKDAGVMSAGWAQYHAMESLVKVAEDEGVELTLFHGRGGTVGRGGAPAHAALLSQPPKSLKGGLRVTEQGEMIRFKLGLPDVAVNSFNLYASAILEANLLPPPEPKQE-WRDLMEVLSEVSCEAYRGVVRGEPDFVPYFRQATPELELG 690          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_VIBVY (Phosphoenolpyruvate carboxylase OS=Vibrio vulnificus (strain YJ016) GN=ppc PE=3 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 6.285e-52
Identity = 113/242 (46.69%), Postives = 148/242 (61.16%), Query Frame = 2
Query:   11 DSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            ++ G YVISMA  ASDVLAV LL +++           CP   + V PLFET+ DL  A  VI++L+SID YR  I      HQ VM+GYSDS KDAG   A W  Y A E +V    + GI++TLFH           P + A+ SQPP S+ G LR TEQGEM++ K GLP  AV    +Y +A+L A + PP  P++E WR+LME +S++SC+ YRS V   P+F+ YF +ATP+ ELG
Sbjct:  465 EAFGAYVISMAKTASDVLAVHLLLQESG----------CPY-RMDVCPLFETLDDLNNAEAVIKQLMSIDLYRGFI----QNHQMVMIGYSDSAKDAGVMAAGWAQYHAMEALVNVAEQEGIELTLFHGRGGTIGRGGAPAHAALLSQPPKSLKGGLRVTEQGEMIRFKLGLPDVAVNSFNMYASAILEANLLPPPEPKQE-WRDLMEVLSQVSCEAYRSVVRGEPDFVPYFRQATPELELG 690          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_VIBVU (Phosphoenolpyruvate carboxylase OS=Vibrio vulnificus GN=ppc PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.285e-52
Identity = 113/242 (46.69%), Postives = 148/242 (61.16%), Query Frame = 2
Query:   11 DSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            ++ G YVISMA  ASDVLAV LL +++           CP   + V PLFET+ DL  A  VI++L+SID YR  I      HQ VM+GYSDS KDAG   A W  Y A E +V    + GI++TLFH           P + A+ SQPP S+ G LR TEQGEM++ K GLP  AV    +Y +A+L A + PP  P++E WR+LME +S++SC+ YRS V   P+F+ YF +ATP+ ELG
Sbjct:  465 EAFGAYVISMAKTASDVLAVHLLLQESG----------CPY-RMDVCPLFETLDDLNNAEAVIKQLMSIDLYRGFI----QNHQMVMIGYSDSAKDAGVMAAGWAQYHAMEALVNVAEQEGIELTLFHGRGGTIGRGGAPAHAALLSQPPKSLKGGLRVTEQGEMIRFKLGLPDVAVNSFNMYASAILEANLLPPPEPKQE-WRDLMEVLSQVSCEAYRSVVRGEPDFVPYFRQATPELELG 690          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_VIBFM (Phosphoenolpyruvate carboxylase OS=Vibrio fischeri (strain MJ11) GN=ppc PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.209e-52
Identity = 112/242 (46.28%), Postives = 148/242 (61.16%), Query Frame = 2
Query:   11 DSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            ++LG YVISMA  ASDVLAV LL ++A           CP   + V PLFET+ DL  +  V+ +L SIDWYR  I      HQ VM+GYSDS KDAG  +A W  Y A E +V  C +  I++TLFH           P + A+ SQPP S+ G LR TEQGEM++ K GLP+ AV    +Y +A+L A + PP  P++E WR+LME +S++SC+ YR+ V    +F+ YF  ATP+ ELG
Sbjct:  464 EALGSYVISMARTASDVLAVHLLLQEAG----------CPF-RMDVCPLFETLDDLNRSKEVMEQLFSIDWYRGFI----QNHQMVMIGYSDSAKDAGVMSAGWAQYSAMEALVEVCEKESIELTLFHGRGGTIGRGGAPAHAALLSQPPKSLKGGLRVTEQGEMIRFKLGLPEVAVNSFNLYASAILEANLLPPPEPKQE-WRDLMEVLSEVSCEAYRNVVRGEKDFVPYFRAATPELELG 689          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_VIBF1 (Phosphoenolpyruvate carboxylase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=ppc PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.209e-52
Identity = 112/242 (46.28%), Postives = 148/242 (61.16%), Query Frame = 2
Query:   11 DSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            ++LG YVISMA  ASDVLAV LL ++A           CP   + V PLFET+ DL  +  V+ +L SIDWYR  I      HQ VM+GYSDS KDAG  +A W  Y A E +V  C +  I++TLFH           P + A+ SQPP S+ G LR TEQGEM++ K GLP+ AV    +Y +A+L A + PP  P++E WR+LME +S++SC+ YR+ V    +F+ YF  ATP+ ELG
Sbjct:  464 EALGSYVISMARTASDVLAVHLLLQEAG----------CPF-RMDVCPLFETLDDLNRSKEVMEQLFSIDWYRGFI----QNHQMVMIGYSDSAKDAGVMSAGWAQYSAMEALVEVCEKESIELTLFHGRGGTIGRGGAPAHAALLSQPPKSLKGGLRVTEQGEMIRFKLGLPEVAVNSFNLYASAILEANLLPPPEPKQE-WRDLMEVLSEVSCEAYRNVVRGEKDFVPYFRAATPELELG 689          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_ERWT9 (Phosphoenolpyruvate carboxylase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ppc PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.209e-52
Identity = 110/240 (45.83%), Postives = 146/240 (60.83%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            S+  YVISMA   SDVLAV LL K+A +  +           + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI +TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  +  L +YT A+L A + PP  P+ E W  +ME +S +SC+ YR  V E+ EF+ YF  ATP+ EL
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGIDYA-----------MPVAPLFETLDDLNNANGVMSQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGITLTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEVTISSLSLYTGAILEANLLPPPEPKTE-WIGIMERLSAVSCKMYRGYVREHAEFVPYFRSATPEQEL 691          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_VIBCH (Phosphoenolpyruvate carboxylase OS=Vibrio cholerae GN=ppc PE=3 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 1.072e-51
Identity = 115/242 (47.52%), Postives = 146/242 (60.33%), Query Frame = 2
Query:   11 DSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            D+ G YVISMA  ASDVLAV LL ++A           CP   + V PLFET+ DL  A  VIR+L++ID YR  I      HQ VM+GYSDS KDAG   A W  Y+A E +V    E GI++TLFH           P + A+ SQPP S+ G LR TEQGEM++ K GLP+ AV    +Y +A+L A + PP  P+ E WR LM+ +S+ISC  YR  V   P+F+ YF +ATP+ ELG
Sbjct:  464 DAFGAYVISMARTASDVLAVHLLLQEAG----------CPY-RMDVCPLFETLDDLNNAESVIRQLMNIDLYRGFI----QNHQMVMIGYSDSAKDAGVMAAGWAQYRAMEALVKVGEEAGIELTLFHGRGGTIGRGGAPAHAALLSQPPKSLKGGLRVTEQGEMIRFKLGLPEVAVNSFNMYASAILEANLLPPPEPKNE-WRALMDILSEISCNAYRKVVRGEPDFVPYFRQATPELELG 689          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_VIBSL (Phosphoenolpyruvate carboxylase OS=Vibrio splendidus (strain LGP32) GN=ppc PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.400e-51
Identity = 111/242 (45.87%), Postives = 149/242 (61.57%), Query Frame = 2
Query:   11 DSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            ++ G YVISMA  ASDVLAV LL ++            CP   + V PLFET+ DL  +  V+++L+SID YR  I      HQ VM+GYSDS KDAG  +A W  Y A + +V AC E GI++TLFH           P + A+ SQPP S+ G LR TEQGEM++ K GLP  AV    +Y +A+L A + PP  P++E WR+LME +S++SC+ YR+ V    +F+ YF +ATP+ ELG
Sbjct:  464 EAFGAYVISMARTASDVLAVHLLLQECG----------CPY-RMDVCPLFETLDDLNNSEAVMKQLMSIDLYRGFI----QNHQMVMIGYSDSAKDAGVMSAGWAQYDAMDKLVKACEEEGIELTLFHGRGGTVGRGGAPAHAALLSQPPKSLKGGLRVTEQGEMIRFKLGLPDVAVNSFNLYASAILEANLLPPPEPKQE-WRDLMEVLSEVSCEAYRNVVRGEEKFVPYFRQATPELELG 689          
The following BLAST results are available for this feature:
BLAST of FC930444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_CHRSD2.160e-5247.93Phosphoenolpyruvate carboxylase OS=Chromohalobacte... [more]
CAPP_PSYIN3.685e-5247.11Phosphoenolpyruvate carboxylase OS=Psychromonas in... [more]
CAPP_VIBPA4.813e-5246.28Phosphoenolpyruvate carboxylase OS=Vibrio parahaem... [more]
CAPP_VIBVY6.285e-5246.69Phosphoenolpyruvate carboxylase OS=Vibrio vulnific... [more]
CAPP_VIBVU6.285e-5246.69Phosphoenolpyruvate carboxylase OS=Vibrio vulnific... [more]
CAPP_VIBFM8.209e-5246.28Phosphoenolpyruvate carboxylase OS=Vibrio fischeri... [more]
CAPP_VIBF18.209e-5246.28Phosphoenolpyruvate carboxylase OS=Vibrio fischeri... [more]
CAPP_ERWT98.209e-5245.83Phosphoenolpyruvate carboxylase OS=Erwinia tasmani... [more]
CAPP_VIBCH1.072e-5147.52Phosphoenolpyruvate carboxylase OS=Vibrio cholerae... [more]
CAPP_VIBSL1.400e-5145.87Phosphoenolpyruvate carboxylase OS=Vibrio splendid... [more]

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Properties
Property NameValue
Genbank descriptionC34007F05EF PostHarvC1 Citrus clementina cDNA clone C34007F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930444 ID=FC930444; Name=FC930444; organism=Citrus clementina; type=EST; length=736bp
GGGAGGGAGTGATTCACTTGGGCCATACGTCATTTCTATGGCTTCTAATG
CAAGTGATGTCCTTGCCGTAGAGCTTTTGCAGAAAGACGCCCGACTTGCT
GTTAGTGGTGAGTTAGGGAGACCATGTCCTGGTGGAACGCTACGTGTGGT
TCCTCTGTTTGAGACTGTGACGGACTTGAGAGGAGCTGGTTTGGTGATCA
GGAAATTGTTATCAATTGACTGGTATAGAAAGCACATTATAAAAAACCAT
AACGGGCATCAAGAGGTGATGGTTGGATATTCTGATTCTGGTAAAGATGC
TGGACGCTTCACTGCTGCATGGGAACTATACAAAGCCCAAGAGGATGTTG
TGGCTGCCTGCAATGAGTTTGGTATTAAAGTGACTCTTTTCCATGGGCGA
GGAGGGAGTATTGGCCGTGGTGGTGGCCCTACATATCTTGCCATTCAGTC
TCAACCGCCTGGCTCTGTAATGGGAACACTTCGATCGACTGAGCAAGGGG
AGATGGTGCAGGCCAAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTA
GAGATATACACAACTGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACC
TCCTCGAGAAGAAAAATGGCGTAATCTCATGGAGGAGATCTCAAAAATTA
GTTGCCAGAATTACCGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCC
TACTTTCACGAGGCTACACCCCAGGCTGAACTAGGG
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