FC930444

Overview
NameFC930444
Unique NameFC930444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_BURPS (Phosphoenolpyruvate carboxylase OS=Burkholderia pseudomallei GN=ppc PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.112e-40
Identity = 101/248 (40.73%), Postives = 139/248 (56.05%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGT--LRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGH-QEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQ--PPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            G+ ++  Y+IS     SD++ V LLQK+  L   G LG P       L V+PLFET+ DLR A  ++R   ++    + +   H GH QEVM+GYSDS KD G  T+ WELY+A+  +V   +E GIK+ LFH           PTY AI SQPPG+V G +R TEQGE++ +KF  P+   R LE    A L AT+ P    P +   +   M+ +S  +  +YR+ VYE P F  YF  +TP  E+
Sbjct:  550 GARAVRNYIISHTETVSDLVEVLLLQKETGL-FEGTLGTPHANARNGLMVIPLFETIADLRNASDIMRAFFALPGVGELLA--HQGHEQEVMLGYSDSNKDGGFLTSNWELYRAELALVDLFDERGIKLRLFHGRGGTVGRGGGPTYQAILSQPPGTVNGQIRLTEQGEVIASKFANPEIGRRNLETVVAATLEATLAPHSNAPKQLPAFEAAMQTLSDAAMASYRALVYETPGFTDYFFSSTPITEI 794          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_BURP6 (Phosphoenolpyruvate carboxylase OS=Burkholderia pseudomallei (strain 668) GN=ppc PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.112e-40
Identity = 101/248 (40.73%), Postives = 139/248 (56.05%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGT--LRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGH-QEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQ--PPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            G+ ++  Y+IS     SD++ V LLQK+  L   G LG P       L V+PLFET+ DLR A  ++R   ++    + +   H GH QEVM+GYSDS KD G  T+ WELY+A+  +V   +E GIK+ LFH           PTY AI SQPPG+V G +R TEQGE++ +KF  P+   R LE    A L AT+ P    P +   +   M+ +S  +  +YR+ VYE P F  YF  +TP  E+
Sbjct:  550 GARAVRNYIISHTETVSDLVEVLLLQKETGL-FEGTLGTPHANARNGLMVIPLFETIADLRNASDIMRAFFALPGVGELLA--HQGHEQEVMLGYSDSNKDGGFLTSNWELYRAELALVDLFDERGIKLRLFHGRGGTVGRGGGPTYQAILSQPPGTVNGQIRLTEQGEVIASKFANPEIGRRNLETVVAATLEATLAPHSNAPKQLPAFEAAMQTLSDAAMASYRALVYETPGFTDYFFSSTPITEI 794          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_BURMS (Phosphoenolpyruvate carboxylase OS=Burkholderia mallei (strain SAVP1) GN=ppc PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.112e-40
Identity = 101/248 (40.73%), Postives = 139/248 (56.05%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGT--LRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGH-QEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQ--PPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            G+ ++  Y+IS     SD++ V LLQK+  L   G LG P       L V+PLFET+ DLR A  ++R   ++    + +   H GH QEVM+GYSDS KD G  T+ WELY+A+  +V   +E GIK+ LFH           PTY AI SQPPG+V G +R TEQGE++ +KF  P+   R LE    A L AT+ P    P +   +   M+ +S  +  +YR+ VYE P F  YF  +TP  E+
Sbjct:  550 GARAVRNYIISHTETVSDLVEVLLLQKETGL-FEGTLGTPHANARNGLMVIPLFETIADLRNASDIMRAFFALPGVGELLA--HQGHEQEVMLGYSDSNKDGGFLTSNWELYRAELALVDLFDERGIKLRLFHGRGGTVGRGGGPTYQAILSQPPGTVNGQIRLTEQGEVIASKFANPEIGRRNLETVVAATLEATLAPHSNAPKQLPAFEAAMQTLSDAAMASYRALVYETPGFTDYFFSSTPITEI 794          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_BURMA (Phosphoenolpyruvate carboxylase OS=Burkholderia mallei GN=ppc PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.112e-40
Identity = 101/248 (40.73%), Postives = 139/248 (56.05%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGT--LRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGH-QEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQ--PPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            G+ ++  Y+IS     SD++ V LLQK+  L   G LG P       L V+PLFET+ DLR A  ++R   ++    + +   H GH QEVM+GYSDS KD G  T+ WELY+A+  +V   +E GIK+ LFH           PTY AI SQPPG+V G +R TEQGE++ +KF  P+   R LE    A L AT+ P    P +   +   M+ +S  +  +YR+ VYE P F  YF  +TP  E+
Sbjct:  550 GARAVRNYIISHTETVSDLVEVLLLQKETGL-FEGTLGTPHANARNGLMVIPLFETIADLRNASDIMRAFFALPGVGELLA--HQGHEQEVMLGYSDSNKDGGFLTSNWELYRAELALVDLFDERGIKLRLFHGRGGTVGRGGGPTYQAILSQPPGTVNGQIRLTEQGEVIASKFANPEIGRRNLETVVAATLEATLAPHSNAPKQLPAFEAAMQTLSDAAMASYRALVYETPGFTDYFFSSTPITEI 794          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_BURM9 (Phosphoenolpyruvate carboxylase OS=Burkholderia mallei (strain NCTC 10229) GN=ppc PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.112e-40
Identity = 101/248 (40.73%), Postives = 139/248 (56.05%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGT--LRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGH-QEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQ--PPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            G+ ++  Y+IS     SD++ V LLQK+  L   G LG P       L V+PLFET+ DLR A  ++R   ++    + +   H GH QEVM+GYSDS KD G  T+ WELY+A+  +V   +E GIK+ LFH           PTY AI SQPPG+V G +R TEQGE++ +KF  P+   R LE    A L AT+ P    P +   +   M+ +S  +  +YR+ VYE P F  YF  +TP  E+
Sbjct:  550 GARAVRNYIISHTETVSDLVEVLLLQKETGL-FEGTLGTPHANARNGLMVIPLFETIADLRNASDIMRAFFALPGVGELLA--HQGHEQEVMLGYSDSNKDGGFLTSNWELYRAELALVDLFDERGIKLRLFHGRGGTVGRGGGPTYQAILSQPPGTVNGQIRLTEQGEVIASKFANPEIGRRNLETVVAATLEATLAPHSNAPKQLPAFEAAMQTLSDAAMASYRALVYETPGFTDYFFSSTPITEI 794          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_BURM7 (Phosphoenolpyruvate carboxylase OS=Burkholderia mallei (strain NCTC 10247) GN=ppc PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.112e-40
Identity = 101/248 (40.73%), Postives = 139/248 (56.05%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGT--LRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGH-QEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQ--PPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            G+ ++  Y+IS     SD++ V LLQK+  L   G LG P       L V+PLFET+ DLR A  ++R   ++    + +   H GH QEVM+GYSDS KD G  T+ WELY+A+  +V   +E GIK+ LFH           PTY AI SQPPG+V G +R TEQGE++ +KF  P+   R LE    A L AT+ P    P +   +   M+ +S  +  +YR+ VYE P F  YF  +TP  E+
Sbjct:  550 GARAVRNYIISHTETVSDLVEVLLLQKETGL-FEGTLGTPHANARNGLMVIPLFETIADLRNASDIMRAFFALPGVGELLA--HQGHEQEVMLGYSDSNKDGGFLTSNWELYRAELALVDLFDERGIKLRLFHGRGGTVGRGGGPTYQAILSQPPGTVNGQIRLTEQGEVIASKFANPEIGRRNLETVVAATLEATLAPHSNAPKQLPAFEAAMQTLSDAAMASYRALVYETPGFTDYFFSSTPITEI 794          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_NITEC (Phosphoenolpyruvate carboxylase OS=Nitrosomonas eutropha (strain C91) GN=ppc PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.226e-40
Identity = 93/245 (37.96%), Postives = 139/245 (56.73%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATM--RPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            G  +L  Y+ISMA+    +L   LL K+A L   GE  R     T+ ++PLFET+ DLRG   V+ +L S+  YRK ++++ +  QEVM+GYSDS KD G  T+ WE++KA+ ++    N  G+++ LFH           P+Y  I +QPPGSV G +R TEQGE++ +K+  P+   R LE    A + +T+  R        +   +MEE+S  +   YR  VY+ P F  +F E+TP  E+
Sbjct:  501 GHVALPNYIISMATGVIHILEAALLLKEAGLLQFGEAAR----STVNIIPLFETIDDLRGCANVMEELFSLPEYRK-MLRSRSNLQEVMLGYSDSNKDGGFVTSNWEIHKAEIELTKVFNRHGVRLRLFHGRGGTVGRGGGPSYQGILAQPPGSVNGQIRLTEQGEVIASKYTDPEIGRRNLETLVAATIESTLLDRDAIHCHTPQCYQIMEELSASAYAAYRDLVYKTPNFTQFFQESTPIREI 740          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_RALSO (Phosphoenolpyruvate carboxylase OS=Ralstonia solanacearum GN=ppc PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.519e-40
Identity = 97/245 (39.59%), Postives = 134/245 (54.69%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPP--QPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            GS  +  Y+IS     SD+L V LLQK+A +   G  G    G  + V+PLFET+ DLR A  ++ +LL++  +   ++      QEVM+GYSDS KD G  T+ WELYK +  +V      G+++ LFH           PTY AI SQPPG+V G +R TEQGE++ +KF  P+   R LE    A L AT+ P   +P   E++   M+ +S  +   YR  VYE P F  YF   TP  E+
Sbjct:  539 GSRIVRNYIISHTETLSDLLEVMLLQKEAGMFRHGTNGSGGAGLDVMVIPLFETIEDLRNAPQIMGELLALPGFDA-VLAAQGNEQEVMLGYSDSNKDGGFLTSNWELYKTELALVELFERKGVRLRLFHGRGGTVGRGGGPTYQAILSQPPGTVNGQIRLTEQGEIISSKFANPEIGRRNLETIVAATLEATLLPTRNRPKGLEEFEAAMQALSDHAFSAYRHLVYETPGFKDYFFATTPITEI 782          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_MYCS2 (Phosphoenolpyruvate carboxylase OS=Mycobacterium smegmatis GN=ppc PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.606e-39
Identity = 92/246 (37.40%), Postives = 142/246 (57.72%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPRE--EKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            G  ++  Y+ISM  + SD+L   +L K+A L    ++    P   + VVPLFET+ DL+    ++   L +  YR  ++   +GHQEVM+GYSDS KD G   A W LY+A+ D+V +  + GI++ LFH           P+Y AI +QPPG+V G+LR TEQGE++ AK+  P+ A R LE    A L A++   +   E  E    +++E++ ++ + Y   V+E P F+ YF  +TP +E+G
Sbjct:  501 GPQAVPNYIISMCQSVSDMLEAAVLLKEAGLL---DISGSTPYAPVGVVPLFETIDDLQRGSSILEAALDLPEYRT-MVDARDGHQEVMLGYSDSNKDGGYLAANWALYRAELDLVESARKTGIRLRLFHGRGGTVGRGGGPSYDAILAQPPGAVKGSLRITEQGEVIAAKYAEPRIAHRNLETLLAATLEASLLDVEGLGEEAEPAYQVLDELAALAQRAYSELVHETPGFVEYFKTSTPVSEIG 742          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SYNY3 (Phosphoenolpyruvate carboxylase OS=Synechocystis sp. (strain PCC 6803) GN=ppc PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.097e-39
Identity = 99/268 (36.94%), Postives = 143/268 (53.36%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRK------HIIK-------------------NHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            G D    Y+ISM ++ASDVL V LL K+A     G         +LR+VPLFETV DL+ A  ++  L S+ +YR       H +K                   N    QE+MVGYSDS KD+G  ++ WE++KAQ+ + A      + + LFH           P Y AI +QP G+V G ++ TEQGE++ +K+ LP+ A+  LE  TTAV+ A++        E W  +MEE++  + + YRS +YE P+FL +F   TP  E+
Sbjct:  564 GVDICQTYIISMTNDASDVLEVLLLAKEA-----GLYDPATASNSLRIVPLFETVEDLKNAPGIMDSLFSLPFYRATLAGSYHSLKELQNQPPDYYQIPTTTALLNPGNLQEIMVGYSDSNKDSGFLSSNWEIHKAQKSLQAVAQSHRVILRLFHGRGGSVGRGGGPAYKAILAQPAGTVDGRIKITEQGEVLASKYSLPELALYNLETLTTAVIQASLLKSSFDFIEPWNRIMEELACTARRAYRSLIYEEPDFLDFFLTVTPIPEI 826          
The following BLAST results are available for this feature:
BLAST of FC930444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_BURPS1.112e-4040.73Phosphoenolpyruvate carboxylase OS=Burkholderia ps... [more]
CAPP_BURP61.112e-4040.73Phosphoenolpyruvate carboxylase OS=Burkholderia ps... [more]
CAPP_BURMS1.112e-4040.73Phosphoenolpyruvate carboxylase OS=Burkholderia ma... [more]
CAPP_BURMA1.112e-4040.73Phosphoenolpyruvate carboxylase OS=Burkholderia ma... [more]
CAPP_BURM91.112e-4040.73Phosphoenolpyruvate carboxylase OS=Burkholderia ma... [more]
CAPP_BURM71.112e-4040.73Phosphoenolpyruvate carboxylase OS=Burkholderia ma... [more]
CAPP_NITEC4.226e-4037.96Phosphoenolpyruvate carboxylase OS=Nitrosomonas eu... [more]
CAPP_RALSO5.519e-4039.59Phosphoenolpyruvate carboxylase OS=Ralstonia solan... [more]
CAPP_MYCS21.606e-3937.40Phosphoenolpyruvate carboxylase OS=Mycobacterium s... [more]
CAPP_SYNY32.097e-3936.94Phosphoenolpyruvate carboxylase OS=Synechocystis s... [more]

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Properties
Property NameValue
Genbank descriptionC34007F05EF PostHarvC1 Citrus clementina cDNA clone C34007F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930444 ID=FC930444; Name=FC930444; organism=Citrus clementina; type=EST; length=736bp
GGGAGGGAGTGATTCACTTGGGCCATACGTCATTTCTATGGCTTCTAATG
CAAGTGATGTCCTTGCCGTAGAGCTTTTGCAGAAAGACGCCCGACTTGCT
GTTAGTGGTGAGTTAGGGAGACCATGTCCTGGTGGAACGCTACGTGTGGT
TCCTCTGTTTGAGACTGTGACGGACTTGAGAGGAGCTGGTTTGGTGATCA
GGAAATTGTTATCAATTGACTGGTATAGAAAGCACATTATAAAAAACCAT
AACGGGCATCAAGAGGTGATGGTTGGATATTCTGATTCTGGTAAAGATGC
TGGACGCTTCACTGCTGCATGGGAACTATACAAAGCCCAAGAGGATGTTG
TGGCTGCCTGCAATGAGTTTGGTATTAAAGTGACTCTTTTCCATGGGCGA
GGAGGGAGTATTGGCCGTGGTGGTGGCCCTACATATCTTGCCATTCAGTC
TCAACCGCCTGGCTCTGTAATGGGAACACTTCGATCGACTGAGCAAGGGG
AGATGGTGCAGGCCAAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTA
GAGATATACACAACTGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACC
TCCTCGAGAAGAAAAATGGCGTAATCTCATGGAGGAGATCTCAAAAATTA
GTTGCCAGAATTACCGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCC
TACTTTCACGAGGCTACACCCCAGGCTGAACTAGGG
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