FC930444

Overview
NameFC930444
Unique NameFC930444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_BURVG (Phosphoenolpyruvate carboxylase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=ppc PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.711e-37
Identity = 94/247 (38.06%), Postives = 133/247 (53.85%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGT--LRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQ--PPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            G  ++  Y+IS     SD++ V LLQK+  L + G  G         L V+PLFET+ DLR A  ++R+  ++      +I +    QEVM+GYSDS KD G  T+ WELY+A+  +V    +  I + LFH           PTY AI SQPPG+V G +R TEQGE++ +KF  P+   R LE    A L A++ P    P +   +   M+ +S  +  +YR+ VYE P F  YF  ATP  E+
Sbjct:  553 GPRAVRNYIISHTETVSDLVEVLLLQKETGL-LEGAFGAAHDSARNGLMVIPLFETIPDLRDAARIMREYFALPGIEA-LIAHQGAEQEVMLGYSDSNKDGGFLTSNWELYRAELALVDLFRDRKITLRLFHGRGGTVGRGGGPTYQAILSQPPGTVNGQIRLTEQGEVIASKFANPEIGRRNLETVVAATLEASLLPQSNAPAQLPAFEAAMQALSDAAMASYRALVYETPGFTDYFFAATPITEI 797          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_PROM5 (Phosphoenolpyruvate carboxylase OS=Prochlorococcus marinus (strain MIT 9515) GN=ppc PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.459e-37
Identity = 92/246 (37.40%), Postives = 139/246 (56.50%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIK---NHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            GS     YVISM+ +ASD+L V LL K+      G + +      L VVPLFETV DL+ A  V+ +L  +D+YR  + K        QE+M+GYSDS KD+G  ++ WE+++AQ  +    ++  I + LFH           P Y AI +QP G++ G ++ TEQGE++ +K+ LP+ A+  LE  TTAV+  ++   +     +W +LM  +++ S   YR  V+ENP  L +F E TP  E+
Sbjct:  536 GSRICHSYVISMSHSASDLLEVLLLAKEM-----GLIDQSSQKSKLLVVPLFETVEDLKRAPEVMEQLFQLDFYRSLLPKVGERFKPIQELMLGYSDSNKDSGFLSSNWEIHRAQIALQNLSSKNNILLRLFHGRGGSVGRGGGPAYQAILAQPSGTLKGRIKITEQGEVLASKYSLPELALYNLETVTTAVIQNSLVINRLDATPEWNDLMTRLAETSRIQYRKLVHENPNLLTFFQEVTPIEEI 776          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_LACH4 (Phosphoenolpyruvate carboxylase OS=Lactobacillus helveticus (strain DPC 4571) GN=ppc PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.459e-37
Identity = 90/245 (36.73%), Postives = 137/245 (55.92%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVL--LATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            G D +  ++IS   + SD+L   ++ K+  L  +           ++VVPLFETV DL  A  +I++ L++D  +K ++  HN +QEVM+GYSDS KD G   + W LYKAQ+D+ A   E GIK+T  H           P+Y AI +QP  S+   +R TEQGE++Q K+G    A   LE+  +A +  +A+ +         +R+ M++I   S + Y+  V+ENP FL YF +ATP  E+
Sbjct:  487 GEDLIKQHIISHTESVSDMLEQAIMLKEYDLLDN-------QSARVQVVPLFETVEDLNNARDIIKEYLNLDIVKKWLVSQHN-YQEVMLGYSDSNKDGGYLASCWNLYKAQKDLTAIGEELGIKITYMHGRGGTVGRGGGPSYEAITAQPFNSINDRIRMTEQGEIIQNKYGNKDAAYYNLEMLVSATVDRIASKQIVSEEYIADFRSSMDKIVTESNEIYKKLVFENPNFLDYFLQATPIKEI 723          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_LACAC (Phosphoenolpyruvate carboxylase OS=Lactobacillus acidophilus GN=ppc PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.459e-37
Identity = 91/245 (37.14%), Postives = 138/245 (56.33%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVL--LATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            G D +  ++IS   + SD+L   ++ K+  L V  E  R      ++VVPLFETV DL  A  +I + LS    +K ++  +N +QE+M+GYSDS KD G   + W LYKAQ+D+ A   + G+K+T  H           P+Y AI +QP  S+   +R TEQGE++Q K+G   TA   LE+  +A +  + + +     R   +R+ M++I + S + YR  V+ENP FL YF +ATP  E+
Sbjct:  487 GEDVIKQHIISHTESVSDMLEQAIMLKEYNL-VDSEKAR------IQVVPLFETVEDLLNAREIITQYLSFPIVKKWLVSQNN-YQEIMLGYSDSNKDGGYLASCWNLYKAQKDLTAIGEKLGVKITYMHGRGGTVGRGGGPSYEAITAQPFKSINDRIRMTEQGEIIQNKYGNKDTAYYNLEMLASAAIDRMVSKQAVSEERITDFRSSMDKIVEESNKIYRKLVFENPAFLDYFFQATPIKEI 723          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_AZOC5 (Phosphoenolpyruvate carboxylase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=ppc PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.459e-37
Identity = 93/238 (39.08%), Postives = 137/238 (57.56%), Query Frame = 2
Query:   29 VISMASNASDVLAVELLQKDARL-AVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQ--PPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            +IS A   SD+L + LL K+  L + +GE         + V+PLFET+ DL+  G V+ +LL++  YR  ++ +  G QEVM+GYSDS KD G  ++ WELYKA+  ++       +K+ LFH           P+Y AI +QP G+V G +R TEQGE++ +K+  P+   R LEI  +A L +T+   +   PR E +   MEE+SK +   YRS VYE P F  YF  +T  +E+
Sbjct:  512 IISKAEGISDMLELALLLKEVGLVSATGE-------SAINVIPLFETIGDLQACGPVMDRLLALPEYRA-LVDSRGGEQEVMLGYSDSNKDGGFVSSGWELYKAEIALIEVFARHKVKLRLFHGRGGSVGRGGGPSYDAILAQPAGAVSGQIRITEQGEIISSKYSNPENGRRNLEILVSATLESTLLEAEQASPRPE-FLAAMEELSKTAFTAYRSLVYETPGFEDYFWSSTVISEI 740          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_MYCA1 (Phosphoenolpyruvate carboxylase OS=Mycobacterium avium (strain 104) GN=ppc PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.272e-36
Identity = 89/246 (36.18%), Postives = 136/246 (55.28%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQ--PPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            G  ++  YVISM  + SDVL   +L K+A L  +      CP G   + PLFET+ DL     ++  +L +  YR  ++      QEVM+GYSDS KD G   ++W +Y+A+  +V    + GI++ LFH           P+Y AI +QPPG+V G+LR TEQGE++ AK+  PQ A R LE    A L +T+   +      E    +++E++ ++ + Y   V+E P F+ YF  +TP +E+G
Sbjct:  501 GPAAVPNYVISMCRSVSDVLEAAILLKEAGLIDASGPEPYCPVG---ISPLFETIEDLHNGAAILHAMLELPLYRA-LVAARGQSQEVMLGYSDSNKDGGYLASSWAVYRAELALVEVARKTGIRLRLFHGRGGTVGRGGGPSYEAILAQPPGAVNGSLRLTEQGEVIAAKYAEPQVAQRNLESLVAATLESTLLDVEGLGDTAEPAYAVLDEVAVLAQRAYAELVHETPGFVDYFMASTPVSEIG 742          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_CHRVO (Phosphoenolpyruvate carboxylase OS=Chromobacterium violaceum GN=ppc PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.662e-36
Identity = 94/239 (39.33%), Postives = 139/239 (58.16%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATP 721
            G +++G  +IS  ++ SD+LA+ LL K+A L +  E G+P    ++ +VPLFET+ DL  +  V+R L ++ WY K ++ +    QEVM+GYSDS KD G  T+ W+L++A+  +V    + G ++ LFH           P+Y AI +QP GSV G +R TEQGE++ AK+  P  A R LE    A L A++     P  E    L +E+S  +   YR+ V E P F+ YF EATP
Sbjct:  472 GVEAIGQCIISNCASVSDILALALLCKEAGL-IRLEDGQP--RASVNLVPLFETIADLENSEAVMRALFALPWY-KQLLDSRERVQEVMLGYSDSNKDGGYLTSQWQLWQAETRLVKVFADAGARLQLFHGRGGSVGRGGGPSYEAIVAQPAGSVAGRIRITEQGEVITAKYSDPAIAGRNLEALVAATLEASL--GNIPGGEVDTALFDELSASAFAAYRALV-ETPGFMQYFLEATP 703          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SYNPW (Phosphoenolpyruvate carboxylase OS=Synechococcus sp. (strain WH7803) GN=ppc PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.170e-36
Identity = 92/247 (37.25%), Postives = 140/247 (56.68%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPG-GTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIK-NHNGH--QEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            GS     YVISM+ + SD+L V LL K+A L        P  G   L VVPLFETV DL+ A  V+ +L     YR  + +    G   QE+M+GYSDS KD+G  ++ WE++KAQ  +       G+ + LFH           P Y AI +QP G++ G ++ TEQGE++ +K+ LP+ A+  LE  +TAV+  ++   Q      W +LM  +++ S ++YR+ V++NP+ +A+F + TP  E+
Sbjct:  552 GSRICRTYVISMSHSVSDLLEVLLLSKEAGLV------EPSAGHADLLVVPLFETVEDLQRAPEVMEELFQTPLYRNLLPRVGSQGQPLQELMLGYSDSNKDSGFLSSNWEIHKAQIALQDLAARNGVALRLFHGRGGSVGRGGGPAYQAILAQPSGTLQGRIKITEQGEVLASKYSLPELALYNLETVSTAVVQNSLVTNQLDATPSWNDLMARLARCSRRHYRALVHDNPDLVAFFEQVTPIEEI 792          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SYNP6 (Phosphoenolpyruvate carboxylase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ppc PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.170e-36
Identity = 87/245 (35.51%), Postives = 140/245 (57.14%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARL--AVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            G  +   Y+ISM+   SD+L V LL K+  L   V+G+        +L+V+PLFETV DL+ A  V+  L  + +Y +         QEVM+GYSDS KD+G  ++ WE++KAQ+ +     +  +K+ +FH           P Y AI +QP  +  G ++ TEQGE++ +K+ LP+ A+  LE  TTAV+ +++        E W  +MEE++  S ++YR+ VYE P+ + +F++ TP  E+
Sbjct:  608 GEAACQTYIISMSRELSDLLEVLLLAKEVGLYDPVTGK-------SSLQVIPLFETVEDLQNAPRVMTALFELPFYTQLNPTQSEPLQEVMLGYSDSNKDSGFLSSNWEIHKAQKALGTVARDHRVKLRIFHGRGGSVGRGGGPAYEAILAQPGRTTDGRIKITEQGEVLASKYALPELALYNLETITTAVIQSSLLGSGFDDIEPWNQIMEELAARSRRHYRALVYEQPDLVDFFNQVTPIEEI 845          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_PROMA (Phosphoenolpyruvate carboxylase OS=Prochlorococcus marinus GN=ppc PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.170e-36
Identity = 92/247 (37.25%), Postives = 138/247 (55.87%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLA-VSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRK---HIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            GS     YVISM+   SD+L V LL K+  L  +S E         L V+PLFETV DL+ A  V+ +L   + Y K    + +     QE+M+GYSDS KD+G  ++ WE+++AQ  +    +  G+ + LFH           P Y AI +QP G++ G ++ TEQGE++ +K+ LP+ A+  LE  TTAVL  ++   Q      W  LM  ++  S Q+YR+ V++NP+ +A+F E TP  E+
Sbjct:  548 GSRICRSYVISMSHTVSDLLEVLLLAKEYGLVDISSE------SSDLLVIPLFETVEDLQHAPSVMEELFQSEIYLKLLPRVGEKSQPLQELMLGYSDSNKDSGFLSSNWEIHQAQIALQNLASSHGVALRLFHGRGGSVGRGGGPAYQAILAQPSGTLKGRIKITEQGEVLASKYSLPELALYNLETVTTAVLQNSLVTNQWDATPSWNELMTRLAVRSRQHYRALVHDNPDLVAFFQEVTPIEEI 788          
The following BLAST results are available for this feature:
BLAST of FC930444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_BURVG5.711e-3738.06Phosphoenolpyruvate carboxylase OS=Burkholderia vi... [more]
CAPP_PROM57.459e-3737.40Phosphoenolpyruvate carboxylase OS=Prochlorococcus... [more]
CAPP_LACH47.459e-3736.73Phosphoenolpyruvate carboxylase OS=Lactobacillus h... [more]
CAPP_LACAC7.459e-3737.14Phosphoenolpyruvate carboxylase OS=Lactobacillus a... [more]
CAPP_AZOC57.459e-3739.08Phosphoenolpyruvate carboxylase OS=Azorhizobium ca... [more]
CAPP_MYCA11.272e-3636.18Phosphoenolpyruvate carboxylase OS=Mycobacterium a... [more]
CAPP_CHRVO1.662e-3639.33Phosphoenolpyruvate carboxylase OS=Chromobacterium... [more]
CAPP_SYNPW2.170e-3637.25Phosphoenolpyruvate carboxylase OS=Synechococcus s... [more]
CAPP_SYNP62.170e-3635.51Phosphoenolpyruvate carboxylase OS=Synechococcus s... [more]
CAPP_PROMA2.170e-3637.25Phosphoenolpyruvate carboxylase OS=Prochlorococcus... [more]

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Properties
Property NameValue
Genbank descriptionC34007F05EF PostHarvC1 Citrus clementina cDNA clone C34007F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930444 ID=FC930444; Name=FC930444; organism=Citrus clementina; type=EST; length=736bp
GGGAGGGAGTGATTCACTTGGGCCATACGTCATTTCTATGGCTTCTAATG
CAAGTGATGTCCTTGCCGTAGAGCTTTTGCAGAAAGACGCCCGACTTGCT
GTTAGTGGTGAGTTAGGGAGACCATGTCCTGGTGGAACGCTACGTGTGGT
TCCTCTGTTTGAGACTGTGACGGACTTGAGAGGAGCTGGTTTGGTGATCA
GGAAATTGTTATCAATTGACTGGTATAGAAAGCACATTATAAAAAACCAT
AACGGGCATCAAGAGGTGATGGTTGGATATTCTGATTCTGGTAAAGATGC
TGGACGCTTCACTGCTGCATGGGAACTATACAAAGCCCAAGAGGATGTTG
TGGCTGCCTGCAATGAGTTTGGTATTAAAGTGACTCTTTTCCATGGGCGA
GGAGGGAGTATTGGCCGTGGTGGTGGCCCTACATATCTTGCCATTCAGTC
TCAACCGCCTGGCTCTGTAATGGGAACACTTCGATCGACTGAGCAAGGGG
AGATGGTGCAGGCCAAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTA
GAGATATACACAACTGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACC
TCCTCGAGAAGAAAAATGGCGTAATCTCATGGAGGAGATCTCAAAAATTA
GTTGCCAGAATTACCGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCC
TACTTTCACGAGGCTACACCCCAGGCTGAACTAGGG
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