FC930444

Overview
NameFC930444
Unique NameFC930444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_MYCUA (Phosphoenolpyruvate carboxylase OS=Mycobacterium ulcerans (strain Agy99) GN=ppc PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.170e-36
Identity = 88/246 (35.77%), Postives = 135/246 (54.88%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQ--PPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            G  ++  Y+ISM  + SD+L   +L K+  L  + E    CP G   + PLFET+ DL     +++ +L +  YR  ++    G QEVM+GYSDS KD G   A W +Y+A+  +V    + GI++ LFH           P+Y AI +QPPG+V G+LR TEQGE++ AK+  PQ A R LE    A L +T+   +           +++E++ ++ + Y   V+E P F+ YF  +TP +E G
Sbjct:  501 GPAAVPNYIISMCWSVSDMLEAAVLLKEVGLLDASESEPYCPVG---ISPLFETIEDLHNGAAILQAMLDLPLYRA-LVTARGGCQEVMLGYSDSNKDGGYLAANWAVYRAELALVETARKTGIRLRLFHGRGGTVGRGGGPSYQAILAQPPGAVSGSLRLTEQGEVIAAKYAEPQMARRNLESLLAATLESTLLAVEGLGDTAAPAYAVLDEVAALAQRAYAELVHETPGFVEYFKASTPVSEFG 742          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_RHOP2 (Phosphoenolpyruvate carboxylase OS=Rhodopseudomonas palustris (strain HaA2) GN=ppc PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.702e-36
Identity = 87/244 (35.66%), Postives = 137/244 (56.15%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLAT-MRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            G+ ++   +ISM    SD+L V +L K+  L        P     + +VPLFET+ DL+ +  ++ +LL I  YR+ ++ +  G QEVM+GYSDS KD G  T+ WELYKA+  ++      GI++ LFH           P+Y AI +QP G+V G +R TEQGE++ +K+   +     LEI T A L A+ ++P +   +  + + ME++S ++ + YR  VYE   F+ YF  +T   E+
Sbjct:  506 GAAAIPQCIISMTKGVSDLLEVAVLLKEVGLI------DPSGRSAINIVPLFETIEDLQASSAIMDRLLGIPEYRR-LVDSRGGVQEVMLGYSDSNKDGGFVTSGWELYKAEIGLIEIFEHHGIRLRLFHGRGGSVGRGGGPSYDAIVAQPGGAVNGQIRITEQGEIITSKYSNREVGRNNLEILTAATLEASLLQPKRVAPQRDYLDAMEQLSAMAFKAYRGLVYETDGFVDYFWASTVITEI 742          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_MYCPA (Phosphoenolpyruvate carboxylase OS=Mycobacterium paratuberculosis GN=ppc PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.702e-36
Identity = 88/246 (35.77%), Postives = 135/246 (54.88%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQ--PPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            G  ++  YVISM  + SDVL   +L K+A L  +      CP G   + PL ET+ DL     ++  +L +  YR  ++      QEVM+GYSDS KD G   ++W +Y+A+  +V    + GI++ LFH           P+Y AI +QPPG+V G+LR TEQGE++ AK+  PQ A R LE    A L +T+   +      E    +++E++ ++ + Y   V+E P F+ YF  +TP +E+G
Sbjct:  501 GPAAVPNYVISMCRSVSDVLEAAILLKEAGLIDASGPEPYCPVG---ISPLLETIEDLHNGAAILHAMLELPLYRA-LVAARGQSQEVMLGYSDSNKDGGYLASSWAVYRAELALVEVARKIGIRLRLFHGRGGTVGRGGGPSYEAILAQPPGAVNGSLRLTEQGEVIAAKYAEPQVAQRNLESLVAATLESTLLDVEGLGDTAEPAYAVLDEVAVLAQRAYAELVHETPGFVDYFMASTPVSEIG 742          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_BRAJA (Phosphoenolpyruvate carboxylase OS=Bradyrhizobium japonicum GN=ppc PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.315e-36
Identity = 85/239 (35.56%), Postives = 133/239 (55.65%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLAT-MRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEAT 718
            GSD++   +ISM    SD+L V +L K+  L        P     + +VPLFET+ DL+ +  ++ ++LS+  YR+ ++ +    QEVM+GYSDS KD G  T+ WELYKA+ ++V       +++ LFH           P+Y AI +QP G+V G +R TEQGE++ +K+   +     LEI   A L A+ + P Q     ++   M+E+S ++ + YR  VYE   F+ YF  +T
Sbjct:  505 GSDAIPQCIISMCKGMSDMLEVAVLLKEVGLV------HPSGRSAINIVPLFETIEDLQASSAIMDRMLSLHDYRR-LVDSRGSVQEVMLGYSDSNKDGGFVTSGWELYKAEINLVDVFERHHVRLRLFHGRGGSVGRGGGPSYDAIIAQPGGAVNGQIRITEQGEIISSKYSNAEVGRNNLEILAAATLEASLLHPRQSAPRREYLTAMDELSSLAFRAYRGLVYETDGFVDYFWAST 736          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_MYCLE (Phosphoenolpyruvate carboxylase OS=Mycobacterium leprae GN=ppc PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 8.247e-36
Identity = 90/246 (36.59%), Postives = 135/246 (54.88%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQ--PPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            GS ++  Y+ISM  + SDVL V +L K+  L  +      CP G   + PLFET+ DL     ++  +L +  YR  +    N  QEVM+GYSDS KD G   A W +Y+A+  +V    + GI++ LFH           P+Y AI +QPPG+V G+LR TEQGE++ AK+  PQ A R LE    A L +T+   +      E    +++E++ ++ ++Y   V   P F+ YF  +TP +E+G
Sbjct:  501 GSAAVPNYIISMCQSVSDVLEVAILLKETGLLDASGSQPYCPVG---ISPLFETIDDLHNGAAILHAMLELPLYRTLVAARGNW-QEVMLGYSDSNKDGGYLAANWAVYRAELALVDVARKTGIRLRLFHGRGGTVGRGGGPSYQAILAQPPGAVNGSLRLTEQGEVIAAKYAEPQIARRNLESLVAATLESTLLDVEGLGDAAESAYAILDEVAGLARRSYAELV-NTPGFVDYFQASTPVSEIG 741          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_RHOPB (Phosphoenolpyruvate carboxylase OS=Rhodopseudomonas palustris (strain BisB18) GN=ppc PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.077e-35
Identity = 92/245 (37.55%), Postives = 136/245 (55.51%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQ--PPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            G   +   +ISM    SD+L V LL K+  L      GR      + VVPLFET+ DL+ +  ++ +LLS+  YR+ ++ +  G QEVM+GYSDS KD G  T+ WELYKA+ ++V      G+++ LFH           P+Y AI +QP G+V G +R TEQGE++ +K+   +     LEI   A L A++  P+   PR E + + ME++S  + + YR  VYE   F  YF  +T   E+
Sbjct:  502 GHTVISQCIISMCKGVSDMLEVVLLLKEVGLV--DHAGR----SAINVVPLFETIEDLQASAGIMDRLLSLHDYRR-LVDSRGGVQEVMLGYSDSNKDGGFVTSGWELYKAEIELVKVFEHHGVRLRLFHGRGGSVGRGGGPSYDAILAQPGGAVNGQIRITEQGEIITSKYSNAEVGRNNLEILAAATLEASLLMPRQSAPRAE-YLDAMEQLSSFAFKAYRGLVYETEGFEDYFWASTVITEI 738          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_NOCFA (Phosphoenolpyruvate carboxylase OS=Nocardia farcinica GN=ppc PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.077e-35
Identity = 90/246 (36.59%), Postives = 132/246 (53.66%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQ--PPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            G +++  Y+ISM ++ SD+L   LL K+  L   G      P  T+ +VPLFET+ DL      +   L +  YR+ ++      QEVM+GYSDS KD G   A W LY+A+ D+V    + GI++ LFH            +Y AI +QP G+V G LR TEQGE++ AK+  P  A R LE      L +T+   +      E    LM+E++ ++   Y   V+E P F+ YF ++TP AE+G
Sbjct:  491 GPEAVPNYIISMCTSVSDMLEAALLLKEGGLLDPGA-PEGSPSCTVNIVPLFETIEDLGAGAATLAAALEVPVYRE-LVAAAGMRQEVMLGYSDSNKDGGYLAANWALYRAELDLVEVARKTGIRLRLFHGRGGTVGRGGGRSYDAILAQPAGAVRGALRLTEQGEVIAAKYAEPGAAHRNLESLIAGTLESTLLDVEGLGADAEPAYELMDELAALARAAYARLVHETPGFVEYFRQSTPVAEVG 734          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_NEIMA (Phosphoenolpyruvate carboxylase OS=Neisseria meningitidis serogroup A GN=ppc PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.837e-35
Identity = 87/243 (35.80%), Postives = 140/243 (57.61%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            G D++   +IS     SD+LA+ LL K+  L ++ E G+P     + +VPLFET+  L  A  V+  +  +DWY   ++++    QE+M+GYSDS KD G  T++W LY+A+  +V    ++ +++ LFH           P+Y AI +QP GSV G +R TEQGE++ AK+  P  A R LE    A L A++ P +   + K   LM+++S +S + YR  +  +P+F+ YF + +P  E+
Sbjct:  476 GEDAVTQSIISNCEQPSDLLALALLLKETGL-LAVENGKP--KSRINIVPLFETIEALENACPVMETMFRLDWYGA-LLESRGNIQEIMLGYSDSNKDGGYVTSSWCLYQAELGLVELFKKYDVRMRLFHGRGGSVGRGGGPSYQAILAQPAGSVAGQIRITEQGEVITAKYADPGNAQRNLETLVAATLEASILPDKKDPDAK---LMQDLSDVSFKYYRELI-THPDFIDYFLQTSPIQEI 710          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_STRPN (Phosphoenolpyruvate carboxylase OS=Streptococcus pneumoniae GN=ppc PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.134e-35
Identity = 88/241 (36.51%), Postives = 133/241 (55.19%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVL--LATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATP 721
            G D +   +IS A++ SD+L + +L K+  L V  E  R      +++VPLFET+ DL  +   +RK LS+   +K I  + N +QE+M+GYSDS KD G  ++ W LYKAQ+ + A  +EFG+KVT FH           PTY AI SQP  S+   +R TEQGE++  K+G    A   LE+  +A +  + T +        ++  +M+++   S   YR  V+ N  F  YF E++P
Sbjct:  473 GDDVIRQTIISHATSLSDMLELAILLKEVGL-VDTERAR------VQIVPLFETIEDLDHSEETMRKYLSLSLAKKWI-DSRNNYQEIMLGYSDSNKDGGYLSSCWTLYKAQQQLTAIGDEFGVKVTFFHGRGGTVGRGGGPTYEAITSQPLKSIKDRIRLTEQGEVIGNKYGNKDAAYYNLEMLVSAAINRMITQKKSDTNTPNRYETIMDQVVDRSYDIYRDLVFGNEHFYDYFFESSP 705          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_RHOPS (Phosphoenolpyruvate carboxylase OS=Rhodopseudomonas palustris (strain BisB5) GN=ppc PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.134e-35
Identity = 87/241 (36.10%), Postives = 134/241 (55.60%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGG--TLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLAT-MRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEAT 718
            G  ++   +ISM    SD+L V +L K        E+G   P G   + +VPLFET+ DL+    ++ +LL+I  YR+ ++ +  G QEVM+GYSDS KD G  T+ WELYKA+  ++      G+++ LFH           P+Y AI +QP G+V G +R TEQGE++ +K+   +     LEI T A L A+ ++P +      +   ME++S ++ + YR  VYE   F+ YF  +T
Sbjct:  506 GEAAIPQCIISMTKGVSDLLEVAVLLK--------EVGLIDPSGRCAINIVPLFETIEDLQACAAIMDRLLAIPEYRR-LVDSRGGVQEVMLGYSDSNKDGGFVTSGWELYKAEIGLLDVFEHHGVRLRLFHGRGGSVGRGGGPSYDAIVAQPGGAVNGQIRITEQGEIITSKYSNREVGRNNLEILTAATLEASLLQPRRSAPHHDYLEAMEQLSALAFKAYRGLVYETDGFVDYFWSST 737          
The following BLAST results are available for this feature:
BLAST of FC930444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_MYCUA2.170e-3635.77Phosphoenolpyruvate carboxylase OS=Mycobacterium u... [more]
CAPP_RHOP23.702e-3635.66Phosphoenolpyruvate carboxylase OS=Rhodopseudomona... [more]
CAPP_MYCPA3.702e-3635.77Phosphoenolpyruvate carboxylase OS=Mycobacterium p... [more]
CAPP_BRAJA6.315e-3635.56Phosphoenolpyruvate carboxylase OS=Bradyrhizobium ... [more]
CAPP_MYCLE8.247e-3636.59Phosphoenolpyruvate carboxylase OS=Mycobacterium l... [more]
CAPP_RHOPB1.077e-3537.55Phosphoenolpyruvate carboxylase OS=Rhodopseudomona... [more]
CAPP_NOCFA1.077e-3536.59Phosphoenolpyruvate carboxylase OS=Nocardia farcin... [more]
CAPP_NEIMA1.837e-3535.80Phosphoenolpyruvate carboxylase OS=Neisseria menin... [more]
CAPP_STRPN3.134e-3536.51Phosphoenolpyruvate carboxylase OS=Streptococcus p... [more]
CAPP_RHOPS3.134e-3536.10Phosphoenolpyruvate carboxylase OS=Rhodopseudomona... [more]

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Properties
Property NameValue
Genbank descriptionC34007F05EF PostHarvC1 Citrus clementina cDNA clone C34007F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930444 ID=FC930444; Name=FC930444; organism=Citrus clementina; type=EST; length=736bp
GGGAGGGAGTGATTCACTTGGGCCATACGTCATTTCTATGGCTTCTAATG
CAAGTGATGTCCTTGCCGTAGAGCTTTTGCAGAAAGACGCCCGACTTGCT
GTTAGTGGTGAGTTAGGGAGACCATGTCCTGGTGGAACGCTACGTGTGGT
TCCTCTGTTTGAGACTGTGACGGACTTGAGAGGAGCTGGTTTGGTGATCA
GGAAATTGTTATCAATTGACTGGTATAGAAAGCACATTATAAAAAACCAT
AACGGGCATCAAGAGGTGATGGTTGGATATTCTGATTCTGGTAAAGATGC
TGGACGCTTCACTGCTGCATGGGAACTATACAAAGCCCAAGAGGATGTTG
TGGCTGCCTGCAATGAGTTTGGTATTAAAGTGACTCTTTTCCATGGGCGA
GGAGGGAGTATTGGCCGTGGTGGTGGCCCTACATATCTTGCCATTCAGTC
TCAACCGCCTGGCTCTGTAATGGGAACACTTCGATCGACTGAGCAAGGGG
AGATGGTGCAGGCCAAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTA
GAGATATACACAACTGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACC
TCCTCGAGAAGAAAAATGGCGTAATCTCATGGAGGAGATCTCAAAAATTA
GTTGCCAGAATTACCGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCC
TACTTTCACGAGGCTACACCCCAGGCTGAACTAGGG
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