FC930444

Overview
NameFC930444
Unique NameFC930444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14298 contig Ccv1_Contig14298:267..1002. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_MARMS (Phosphoenolpyruvate carboxylase OS=Marinomonas sp. (strain MWYL1) GN=ppc PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.466e-56
Identity = 114/244 (46.72%), Postives = 156/244 (63.93%), Query Frame = 2
Query:    2 GGSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            G  +S G YVISMAS  SDVLAV L+ K++ +           G  +R+VPLFET+ DL  A  +I +L SI WY+ +I    NG QEVM+GYSDS KDAG+  A W  Y+AQE +   C + GI +TLFH           P ++AI SQPPGSV G +R TEQGEM++ KFG+P  AVR LE+Y +AV+ A++ P +PP+EE WR +M+E++++    YRS +  + +F+ YF   TP+ EL
Sbjct:  462 GQQNSFGSYVISMASAPSDVLAVALMLKESGV-----------GFPMRIVPLFETLADLDNAEPIIEQLFSIPWYKSYI----NGRQEVMIGYSDSAKDAGQIAATWGQYRAQEALTRLCKKHGIHLTLFHGRGGTVGRGGGPAHVAILSQPPGSVNGAIRVTEQGEMIRFKFGIPDIAVRSLELYCSAVMEASLIPAEPPKEE-WRAIMDEMAEVGMNQYRSIIRGHEDFVPYFRATTPEQEL 689          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_PSESM (Phosphoenolpyruvate carboxylase OS=Pseudomonas syringae pv. tomato GN=ppc PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.206e-56
Identity = 121/241 (50.21%), Postives = 152/241 (63.07%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SLG YVISMA +ASDVLAV+LL K++ L       RP     +RVVPLFET+ DL  AG VI  LL +  YR  +     G QEVM+GYSDS KDAG   AAW  Y+AQE +V  C E  +++ LFH           P + AI SQPPGSV G  R+TEQGEM++ KFGLP  A + L +Y  AVL AT+ PP PP +  WR +M++++      YR+ V ENPEF+ YF +ATP+ ELG
Sbjct:  467 SLGSYVISMAGSASDVLAVQLLLKESGLQ------RP-----MRVVPLFETLADLDNAGPVIETLLGLPGYRSRL----QGPQEVMIGYSDSAKDAGTTAAAWAQYRAQEKLVEICREQQVELLLFHGRGGTVGRGGGPAHAAILSQPPGSVAGRFRTTEQGEMIRFKFGLPDIAEQNLNLYLAAVLEATLLPPPPP-QPAWRTMMDQMASDGVSAYRAVVRENPEFVEYFRQATPEQELG 691          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_PSEPK (Phosphoenolpyruvate carboxylase OS=Pseudomonas putida (strain KT2440) GN=ppc PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.206e-56
Identity = 121/241 (50.21%), Postives = 155/241 (64.32%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SLG YVISMA  ASDVLAV+LL K+A L       RP     +RVVPLFET+ DL  AG V+++LL +  YR  +     G QEVM+GYSDS KDAG   AAW  Y+AQE++V  C E  +++ LFH           P + AI SQPPGSV G  R+TEQGEM++ KFGLP  A + L +Y  AVL AT+ PP PP +  WR +M++++    Q YRS V ENP+F+ YF ++TP+ ELG
Sbjct:  464 SLGSYVISMAGAASDVLAVQLLLKEAGLT------RP-----MRVVPLFETLADLDNAGPVMQRLLGLPGYRAGL----RGPQEVMIGYSDSAKDAGTTAAAWAQYRAQENLVRICAEHQVELLLFHGRGGTVGRGGGPAHAAILSQPPGSVAGRFRTTEQGEMIRFKFGLPGIAEQNLNLYLAAVLEATLLPPPPP-QPAWREVMDQLAADGVQAYRSVVRENPDFVEYFRQSTPEQELG 688          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_PSEP1 (Phosphoenolpyruvate carboxylase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ppc PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.206e-56
Identity = 121/241 (50.21%), Postives = 155/241 (64.32%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SLG YVISMA  ASDVLAV+LL K+A L       RP     +RVVPLFET+ DL  AG V+++LL +  YR  +     G QEVM+GYSDS KDAG   AAW  Y+AQE++V  C E  +++ LFH           P + AI SQPPGSV G  R+TEQGEM++ KFGLP  A + L +Y  AVL AT+ PP PP +  WR +M++++    Q YRS V ENP+F+ YF ++TP+ ELG
Sbjct:  464 SLGSYVISMAGAASDVLAVQLLLKEAGLT------RP-----MRVVPLFETLADLDNAGPVMQRLLGLPGYRAGL----RGPQEVMIGYSDSAKDAGTTAAAWAQYRAQENLVRICAEHQVELLLFHGRGGTVGRGGGPAHAAILSQPPGSVAGRFRTTEQGEMIRFKFGLPGIAEQNLNLYLAAVLEATLLPPPPP-QPAWREVMDQLAADGVQAYRSVVRENPDFVEYFRQSTPEQELG 688          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_PSEU2 (Phosphoenolpyruvate carboxylase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=ppc PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.494e-56
Identity = 121/241 (50.21%), Postives = 153/241 (63.49%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SLG YVISMA +ASDVLAV+LL K++ L       RP     +RVVPLFET+ DL  AG VI  LL +  YR  +    +G QEVM+GYSDS KDAG   AAW  Y+AQE +V  C E  +++ LFH           P + AI SQPPGSV G  R+TEQGEM++ KFGLP  A + L +Y  AVL AT+ PP PP +  WR +M++++      YR+ V ENPEF+ YF +ATP+ ELG
Sbjct:  467 SLGSYVISMAGSASDVLAVQLLLKESGLQ------RP-----MRVVPLFETLADLDNAGPVIETLLGLPGYRSRL----HGPQEVMIGYSDSAKDAGTTAAAWAQYRAQERLVEICREQQVELLLFHGRGGTVGRGGGPAHAAILSQPPGSVAGRFRTTEQGEMIRFKFGLPDIAEQNLNLYLAAVLEATLLPPPPP-QPAWRTMMDQMADDGVSAYRAVVRENPEFVEYFRQATPEQELG 691          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_PSEPG (Phosphoenolpyruvate carboxylase OS=Pseudomonas putida (strain GB-1) GN=ppc PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.494e-56
Identity = 121/241 (50.21%), Postives = 155/241 (64.32%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SLG YVISMA  ASDVLAV+LL K+A L       RP     +RVVPLFET+ DL  AG V+++LL +  YR  +     G QEVM+GYSDS KDAG   AAW  Y+AQE++V  C E  +++ LFH           P + AI SQPPGSV G  R+TEQGEM++ KFGLP  A + L +Y  AVL AT+ PP PP +  WR LM++++    + YRS V ENP+F+ YF ++TP+ ELG
Sbjct:  464 SLGSYVISMAGAASDVLAVQLLLKEAGLT------RP-----MRVVPLFETLADLDNAGPVMQRLLGLPGYRAGL----RGPQEVMIGYSDSAKDAGTTAAAWAQYRAQENLVRICAEHQVELLLFHGRGGTVGRGGGPAHAAILSQPPGSVAGRFRTTEQGEMIRFKFGLPGIAEQNLNLYLAAVLEATLLPPPPP-QPAWRELMDQLAADGVKAYRSVVRENPDFVEYFRQSTPEQELG 688          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_AMAHP (Phosphoenolpyruvate carboxylase OS=Amaranthus hypochondriacus PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 7.175e-56
Identity = 115/243 (47.33%), Postives = 154/243 (63.37%), Query Frame = 2
Query:    8 SDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            +DS G Y+ISMA+  SDVLAVELLQ++  +       +P     LRVVPLFE + DL+ A   + +L SIDWY+  I    NG QEVM+GYSDSGKDAGR +AAW+LYK QE ++    E+G+K+T+FH           PT+LA+ SQPP ++ G+LR T QGE+++  FG      R LE YT A L   + PP  P+ E WR LM+E++ I+ + YRS V + P F+ YF  ATP+ E G
Sbjct:  520 NDSFGAYIISMATAPSDVLAVELLQRECGIK------KP-----LRVVPLFEKLADLQSAAASMTRLFSIDWYKNRI----NGTQEVMIGYSDSGKDAGRLSAAWQLYKVQEQLIQVAKEYGVKLTMFHGRGGTVGRGGGPTHLALLSQPPDTIHGSLRVTIQGEVIEQSFGEEHLCFRTLERYTAATLEHGIDPPTSPKPE-WRALMDEMAVITTKEYRSVVLQEPRFVEYFRSATPELEYG 746          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_ACIAD (Phosphoenolpyruvate carboxylase OS=Acinetobacter sp. (strain ADP1) GN=ppc PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 7.175e-56
Identity = 117/241 (48.55%), Postives = 152/241 (63.07%), Query Frame = 2
Query:   11 DSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            +SLG Y+ISMA  ASDVLAV LLQK+A +              LRVVPLFET+ DL GA   +  L ++ WY++HI     G  EVM+GYSDS KDAG  +A W  Y+AQE++ A     G+++TLFH           PT  A+ SQPPGS+ G +R TEQGEM++ KFGL   A++ LEIYT A L AT+ PP  P++E WR+LM +++ IS + YR TV ENP F+ Y    TP+ EL
Sbjct:  477 ESLGAYIISMAEYASDVLAVLLLQKEAGILQP-----------LRVVPLFETLKDLDGAAKTMETLFNMHWYKQHI----QGKHEVMIGYSDSAKDAGFMSANWAQYRAQEELTAVAKSHGVQLTLFHGRGGSISRGGAPTQQALFSQPPGSISGAIRVTEQGEMIRFKFGLEGVALQNLEIYTAATLEATLLPPPVPKQE-WRDLMHQMTDISVRVYRETVRENPHFVQYLRTVTPELEL 701          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SHESH (Phosphoenolpyruvate carboxylase OS=Shewanella sediminis (strain HAW-EB3) GN=ppc PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.371e-56
Identity = 121/241 (50.21%), Postives = 153/241 (63.49%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            +LG YVISMAS  SDVL V LL K        E G P P   +RVVPLFET+ DL  A   +  L +IDWYR +      GHQEVM+GYSDS KDAG   AAW  Y AQE++V    +  +K+TLFH           P + AI SQPPGSV G +R TEQGEM++ KFGLP+ AV+ L +YT+AV+ AT+ PP  P+ E WR  M+++++ S   YRS V + P+F+AYF  ATP+ ELG
Sbjct:  467 ALGSYVISMASKPSDVLTVLLLLK--------ETGCPHP---MRVVPLFETLDDLNNASSCMTALFAIDWYRGYT----KGHQEVMIGYSDSAKDAGVMAAAWAQYHAQEELVEVSRQAEVKLTLFHGRGGTIGRGGGPAHEAILSQPPGSVDGRIRVTEQGEMIRFKFGLPKLAVQSLALYTSAVMEATLLPPPEPKPE-WRACMQKLAEESVDAYRSIVRDEPDFVAYFRAATPEVELG 691          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_PSEPF (Phosphoenolpyruvate carboxylase OS=Pseudomonas fluorescens (strain Pf0-1) GN=ppc PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.371e-56
Identity = 124/241 (51.45%), Postives = 154/241 (63.90%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SLG YVISMA  ASDVLAV+LL K+     SG L RP     +RVVPLFET+ DL  AG VI +LL +  YR  +     G QEVM+GYSDS KDAG   AAW  Y+AQE +V  C E  +++ LFH           P + AI SQPPGSV G  R+TEQGEM++ KFGLP  A + L +Y  AVL AT+ PP PP  E WR+LM+E++      YR+ V ENP+F+ YF ++TP+ ELG
Sbjct:  465 SLGSYVISMAGAASDVLAVQLLLKE-----SGVL-RP-----MRVVPLFETLADLDNAGPVIERLLLLPGYRARL----QGPQEVMIGYSDSAKDAGTTAAAWAQYRAQERLVEICREQQVELLLFHGRGGTVGRGGGPAHAAILSQPPGSVAGRFRTTEQGEMIRFKFGLPDIAEQNLNLYLAAVLEATLLPPPPPTPE-WRHLMDELAADGVAAYRAVVRENPQFVEYFRQSTPEQELG 689          
The following BLAST results are available for this feature:
BLAST of FC930444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_MARMS2.466e-5646.72Phosphoenolpyruvate carboxylase OS=Marinomonas sp.... [more]
CAPP_PSESM4.206e-5650.21Phosphoenolpyruvate carboxylase OS=Pseudomonas syr... [more]
CAPP_PSEPK4.206e-5650.21Phosphoenolpyruvate carboxylase OS=Pseudomonas put... [more]
CAPP_PSEP14.206e-5650.21Phosphoenolpyruvate carboxylase OS=Pseudomonas put... [more]
CAPP_PSEU25.494e-5650.21Phosphoenolpyruvate carboxylase OS=Pseudomonas syr... [more]
CAPP_PSEPG5.494e-5650.21Phosphoenolpyruvate carboxylase OS=Pseudomonas put... [more]
CAPP_AMAHP7.175e-5647.33Phosphoenolpyruvate carboxylase OS=Amaranthus hypo... [more]
CAPP_ACIAD7.175e-5648.55Phosphoenolpyruvate carboxylase OS=Acinetobacter s... [more]
CAPP_SHESH9.371e-5650.21Phosphoenolpyruvate carboxylase OS=Shewanella sedi... [more]
CAPP_PSEPF9.371e-5651.45Phosphoenolpyruvate carboxylase OS=Pseudomonas flu... [more]

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Properties
Property NameValue
Genbank descriptionC34007F05EF PostHarvC1 Citrus clementina cDNA clone C34007F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930444 ID=FC930444; Name=FC930444; organism=Citrus clementina; type=EST; length=736bp
GGGAGGGAGTGATTCACTTGGGCCATACGTCATTTCTATGGCTTCTAATG
CAAGTGATGTCCTTGCCGTAGAGCTTTTGCAGAAAGACGCCCGACTTGCT
GTTAGTGGTGAGTTAGGGAGACCATGTCCTGGTGGAACGCTACGTGTGGT
TCCTCTGTTTGAGACTGTGACGGACTTGAGAGGAGCTGGTTTGGTGATCA
GGAAATTGTTATCAATTGACTGGTATAGAAAGCACATTATAAAAAACCAT
AACGGGCATCAAGAGGTGATGGTTGGATATTCTGATTCTGGTAAAGATGC
TGGACGCTTCACTGCTGCATGGGAACTATACAAAGCCCAAGAGGATGTTG
TGGCTGCCTGCAATGAGTTTGGTATTAAAGTGACTCTTTTCCATGGGCGA
GGAGGGAGTATTGGCCGTGGTGGTGGCCCTACATATCTTGCCATTCAGTC
TCAACCGCCTGGCTCTGTAATGGGAACACTTCGATCGACTGAGCAAGGGG
AGATGGTGCAGGCCAAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTA
GAGATATACACAACTGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACC
TCCTCGAGAAGAAAAATGGCGTAATCTCATGGAGGAGATCTCAAAAATTA
GTTGCCAGAATTACCGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCC
TACTTTCACGAGGCTACACCCCAGGCTGAACTAGGG
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