FC930444

Overview
NameFC930444
Unique NameFC930444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_ERWCT (Phosphoenolpyruvate carboxylase OS=Erwinia carotovora subsp. atroseptica GN=ppc PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.088e-55
Identity = 116/241 (48.13%), Postives = 150/241 (62.24%), Query Frame = 2 
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV+LL K+A           CP   L V PLFET+ DL  A  V+ +LLSIDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI +TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP   +  L +YT A+L A + PP  P++E W  +M+E+S++SC  YR  V ENP+F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMARTPSDVLAVQLLLKEAG----------CPFA-LPVAPLFETLDDLNNADDVMTQLLSIDWYRGFI----QGKQMVMIGYSDSAKDAGVMAASWAQYRAQDALIKTCEKAGIALTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPDVTISSLALYTGAILEANLLPPPEPKQE-WHEVMDELSRVSCDMYRGYVRENPDFVPYFRAATPELELG 692
[Close]
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SALTY (Phosphoenolpyruvate carboxylase OS=Salmonella typhimurium GN=ppc PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.726e-55
Identity = 114/241 (47.30%), Postives = 152/241 (63.07%), Query Frame = 2 
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT+A+L A + PP  P+ + WR++M+E+S ISC+ YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNADDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEVTVSSLSLYTSAILEANLLPPPEPK-DSWRHIMDELSVISCETYRGYVRENKDFVPYFRSATPEQELG 692
[Close]
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SALTI (Phosphoenolpyruvate carboxylase OS=Salmonella typhi GN=ppc PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.726e-55
Identity = 114/241 (47.30%), Postives = 152/241 (63.07%), Query Frame = 2 
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT+A+L A + PP  P+ + WR++M+E+S ISC+ YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNADDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEVTVSSLSLYTSAILEANLLPPPEPK-DSWRHIMDELSVISCETYRGYVRENKDFVPYFRSATPEQELG 692
[Close]
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SALSV (Phosphoenolpyruvate carboxylase OS=Salmonella schwarzengrund (strain CVM19633) GN=ppc PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.726e-55
Identity = 114/241 (47.30%), Postives = 152/241 (63.07%), Query Frame = 2 
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT+A+L A + PP  P+ + WR++M+E+S ISC+ YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNADDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEVTVSSLSLYTSAILEANLLPPPEPK-DSWRHIMDELSVISCETYRGYVRENKDFVPYFRSATPEQELG 692
[Close]
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SALPC (Phosphoenolpyruvate carboxylase OS=Salmonella paratyphi C (strain RKS4594) GN=ppc PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.726e-55
Identity = 114/241 (47.30%), Postives = 152/241 (63.07%), Query Frame = 2 
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT+A+L A + PP  P+ + WR++M+E+S ISC+ YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNADDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEVTVSSLSLYTSAILEANLLPPPEPK-DSWRHIMDELSVISCETYRGYVRENKDFVPYFRSATPEQELG 692
[Close]
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SALPB (Phosphoenolpyruvate carboxylase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ppc PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.726e-55
Identity = 114/241 (47.30%), Postives = 152/241 (63.07%), Query Frame = 2 
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT+A+L A + PP  P+ + WR++M+E+S ISC+ YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNADDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEVTVSSLSLYTSAILEANLLPPPEPK-DSWRHIMDELSVISCETYRGYVRENKDFVPYFRSATPEQELG 692
[Close]
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SALNS (Phosphoenolpyruvate carboxylase OS=Salmonella newport (strain SL254) GN=ppc PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.726e-55
Identity = 114/241 (47.30%), Postives = 152/241 (63.07%), Query Frame = 2 
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT+A+L A + PP  P+ + WR++M+E+S ISC+ YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNADDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEVTVSSLSLYTSAILEANLLPPPEPK-DSWRHIMDELSVISCETYRGYVRENKDFVPYFRSATPEQELG 692
[Close]
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SALHS (Phosphoenolpyruvate carboxylase OS=Salmonella heidelberg (strain SL476) GN=ppc PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.726e-55
Identity = 114/241 (47.30%), Postives = 152/241 (63.07%), Query Frame = 2 
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT+A+L A + PP  P+ + WR++M+E+S ISC+ YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNADDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEVTVSSLSLYTSAILEANLLPPPEPK-DSWRHIMDELSVISCETYRGYVRENKDFVPYFRSATPEQELG 692
[Close]
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SALG2 (Phosphoenolpyruvate carboxylase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=ppc PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.726e-55
Identity = 114/241 (47.30%), Postives = 152/241 (63.07%), Query Frame = 2 
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT+A+L A + PP  P+ + WR++M+E+S ISC+ YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNADDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEVTVSSLSLYTSAILEANLLPPPEPK-DSWRHIMDELSVISCETYRGYVRENKDFVPYFRSATPEQELG 692
[Close]
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SALEP (Phosphoenolpyruvate carboxylase OS=Salmonella enteritidis PT4 (strain P125109) GN=ppc PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.726e-55
Identity = 114/241 (47.30%), Postives = 152/241 (63.07%), Query Frame = 2 
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT+A+L A + PP  P+ + WR++M+E+S ISC+ YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNADDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEVTVSSLSLYTSAILEANLLPPPEPK-DSWRHIMDELSVISCETYRGYVRENKDFVPYFRSATPEQELG 692
The following BLAST results are available for this feature:
BLAST of FC930444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_ERWCT2.088e-5548.13Phosphoenolpyruvate carboxylase OS=Erwinia carotov... [more]
CAPP_SALTY2.726e-5547.30Phosphoenolpyruvate carboxylase OS=Salmonella typh... [more]
CAPP_SALTI2.726e-5547.30Phosphoenolpyruvate carboxylase OS=Salmonella typh... [more]
CAPP_SALSV2.726e-5547.30Phosphoenolpyruvate carboxylase OS=Salmonella schw... [more]
CAPP_SALPC2.726e-5547.30Phosphoenolpyruvate carboxylase OS=Salmonella para... [more]
CAPP_SALPB2.726e-5547.30Phosphoenolpyruvate carboxylase OS=Salmonella para... [more]
CAPP_SALNS2.726e-5547.30Phosphoenolpyruvate carboxylase OS=Salmonella newp... [more]
CAPP_SALHS2.726e-5547.30Phosphoenolpyruvate carboxylase OS=Salmonella heid... [more]
CAPP_SALG22.726e-5547.30Phosphoenolpyruvate carboxylase OS=Salmonella gall... [more]
CAPP_SALEP2.726e-5547.30Phosphoenolpyruvate carboxylase OS=Salmonella ente... [more]

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Properties
Property NameValue
Genbank descriptionC34007F05EF PostHarvC1 Citrus clementina cDNA clone C34007F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930444 ID=FC930444; Name=FC930444; organism=Citrus clementina; type=EST; length=736bp
GGGAGGGAGTGATTCACTTGGGCCATACGTCATTTCTATGGCTTCTAATG
CAAGTGATGTCCTTGCCGTAGAGCTTTTGCAGAAAGACGCCCGACTTGCT
GTTAGTGGTGAGTTAGGGAGACCATGTCCTGGTGGAACGCTACGTGTGGT
TCCTCTGTTTGAGACTGTGACGGACTTGAGAGGAGCTGGTTTGGTGATCA
GGAAATTGTTATCAATTGACTGGTATAGAAAGCACATTATAAAAAACCAT
AACGGGCATCAAGAGGTGATGGTTGGATATTCTGATTCTGGTAAAGATGC
TGGACGCTTCACTGCTGCATGGGAACTATACAAAGCCCAAGAGGATGTTG
TGGCTGCCTGCAATGAGTTTGGTATTAAAGTGACTCTTTTCCATGGGCGA
GGAGGGAGTATTGGCCGTGGTGGTGGCCCTACATATCTTGCCATTCAGTC
TCAACCGCCTGGCTCTGTAATGGGAACACTTCGATCGACTGAGCAAGGGG
AGATGGTGCAGGCCAAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTA
GAGATATACACAACTGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACC
TCCTCGAGAAGAAAAATGGCGTAATCTCATGGAGGAGATCTCAAAAATTA
GTTGCCAGAATTACCGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCC
TACTTTCACGAGGCTACACCCCAGGCTGAACTAGGG
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