FC930444

Overview
NameFC930444
Unique NameFC930444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SHIDS (Phosphoenolpyruvate carboxylase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ppc PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.308e-54
Identity = 115/241 (47.72%), Postives = 149/241 (61.83%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT A+L A + PP P  +E WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPP-PELKESWRRIMDELSVISCDLYRGYVRENKDFVPYFRSATPEQELG 692          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_CITK8 (Phosphoenolpyruvate carboxylase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=ppc PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.308e-54
Identity = 112/241 (46.47%), Postives = 150/241 (62.24%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A ++ +           + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  +  L +YT A+L A + PP  P+   WR++M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGISFA-----------MPVAPLFETLDDLNNADAVMTQLLNIDWYRGFI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEVTISSLSLYTGAILEANLLPPPEPK-NSWRHIMDELSVISCDLYRGYVRENKDFVPYFRSATPEQELG 692          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_ECO81 (Phosphoenolpyruvate carboxylase OS=Escherichia coli O81 (strain ED1a) GN=ppc PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.014e-54
Identity = 115/241 (47.72%), Postives = 149/241 (61.83%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT A+L A + PP  P+ E WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPK-ESWRCIMDELSVISCDVYRGYVRENKDFVPYFRSATPEQELG 692          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_YERE8 (Phosphoenolpyruvate carboxylase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=ppc PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.715e-54
Identity = 116/241 (48.13%), Postives = 149/241 (61.83%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A           CP  TL V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI +TLFH           P + A+ SQPPGS+ G LR TEQGEM++ KFGLP+  +  L +Y +AVL A + PP  P++E W  +M+ +S  SC+ YR  V ENP+F+ YF  ATP+ ELG
Sbjct:  467 SIAAYVISMAKVPSDVLAVHLLLKEAG----------CPF-TLPVAPLFETLDDLNNADDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYRAQDALIKTCEKAGISLTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKFGLPEVTISSLALYASAVLEANLLPPPEPKKE-WNEVMDILSDASCEMYRGYVRENPQFVPYFRAATPELELG 691          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SHIBS (Phosphoenolpyruvate carboxylase OS=Shigella boydii serotype 4 (strain Sb227) GN=ppc PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.715e-54
Identity = 114/241 (47.30%), Postives = 148/241 (61.41%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT A+L A + PP  P+ E WR +M+E+S ISC  YR  V EN +F+ Y   ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIRTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPK-ESWRRIMDELSVISCDVYRGYVRENKDFVPYLRSATPEQELG 692          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_ACIBT (Phosphoenolpyruvate carboxylase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=ppc PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.715e-54
Identity = 115/241 (47.72%), Postives = 148/241 (61.41%), Query Frame = 2
Query:   11 DSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            +SLG Y+ISMA   SDVLAV LLQK+A +              LRVVPLFET+ DL GA   +  L ++ WY++HI     G  EVM+GYSDS KDAG  +A W  Y+AQE++ A   + G+++TLFH           PT  A+ SQPPGS+ G +R TEQGEM++ KFGL   A++ LEIYT A L AT+ PP  P+ E WR LM  ++  S + YR TV ENP F+ Y    TP+ EL
Sbjct:  477 ESLGAYIISMAEYPSDVLAVLLLQKEAGIQ-----------HPLRVVPLFETLKDLDGAATTMNTLFNMHWYKQHI----QGKHEVMIGYSDSAKDAGFMSANWAQYRAQEELTAIARKHGVQLTLFHGRGGSISRGGAPTQQALFSQPPGSISGAIRVTEQGEMIRFKFGLEGIAMQNLEIYTAATLEATLLPPPEPKAE-WRELMNRMTDHSVKVYRQTVRENPHFVKYLRTVTPELEL 701          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP1_MESCR (Phosphoenolpyruvate carboxylase 1 OS=Mesembryanthemum crystallinum GN=PPCA PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.715e-54
Identity = 110/243 (45.27%), Postives = 156/243 (64.20%), Query Frame = 2
Query:    8 SDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SDS G YVISMA+  SDVLAVELLQ++ ++       +P     LRVVPLFE + DL  A   + +L S+DWY+  I    +G QEVM+GYSDSGKDAGR +AAW++YK QE+++    +FG+K+T+FH           PT+LAI +QP  ++ G+LR T QGE+++  FG      R L+ YT A L   M PP+ P+ E WR L+++++ ++ + YRS V++ P F+ YF  ATP+ E G
Sbjct:  521 SDSFGAYVISMATAPSDVLAVELLQRECKVK------KP-----LRVVPLFEKLADLEAAPASMTRLFSVDWYKNRI----DGKQEVMIGYSDSGKDAGRLSAAWQMYKVQEELLKVSKKFGVKLTMFHGRGGTVGRGGGPTHLAILAQPAETIGGSLRVTIQGEVIEQSFGEQHLCFRTLQRYTAATLEHGMNPPKSPKPE-WRALLDQMAVVATEEYRSIVFKEPRFVEYFRLATPETEYG 747          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_PHOPR (Phosphoenolpyruvate carboxylase OS=Photobacterium profundum GN=ppc PE=3 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 8.771e-54
Identity = 114/242 (47.11%), Postives = 150/242 (61.98%), Query Frame = 2
Query:   11 DSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            ++LG YVISMA  ASDVLAV LL K+A           CP   L V PLFET+ DL     VI++L+SIDWYR  I      HQ VM+GYSDS KDAG   A W  Y+A E++V  C +  +++TLFH           P + A+ SQPP S+ G LR TEQGEM++ K GLP  AV  L +Y +A L A + PP  P++E W +LM+ +S++SC++YR+ V  + EF+ YF  ATP+ ELG
Sbjct:  464 EALGAYVISMARTASDVLAVHLLLKEAG----------CPF-RLDVCPLFETLDDLNNGASVIKELMSIDWYRGFI----QNHQMVMIGYSDSAKDAGVMAAGWAQYRAMEELVEVCEDASVELTLFHGRGGSIGRGGAPAHAALLSQPPRSLKGGLRVTEQGEMIRFKLGLPDVAVNSLSLYASATLEANLLPPPAPKKE-WCDLMDVLSEVSCESYRNVVRGSEEFVPYFRAATPELELG 689          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_YERPY (Phosphoenolpyruvate carboxylase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=ppc PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.954e-53
Identity = 117/241 (48.55%), Postives = 147/241 (61.00%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A           CP  TL V PLFET+ DL  A  V+ +LL IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI +TLFH           P + A+ SQPPGS+ G LR TEQGEM++ KFGLP+  +  L +Y  A+L A + PP  P++E W  +M+ +S  SC  YRS V ENPEF+ YF  ATP+ ELG
Sbjct:  467 SIAAYVISMAKVPSDVLAVHLLLKEAG----------CPF-TLPVAPLFETLDDLNNADDVMTQLLGIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYRAQDALIKTCEKAGITLTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKFGLPEVTISSLALYAGAILEANLLPPPEPKKE-WIEVMDLLSDASCDMYRSYVRENPEFVRYFRAATPELELG 691          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_YERPS (Phosphoenolpyruvate carboxylase OS=Yersinia pseudotuberculosis GN=ppc PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.954e-53
Identity = 117/241 (48.55%), Postives = 147/241 (61.00%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A           CP  TL V PLFET+ DL  A  V+ +LL IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI +TLFH           P + A+ SQPPGS+ G LR TEQGEM++ KFGLP+  +  L +Y  A+L A + PP  P++E W  +M+ +S  SC  YRS V ENPEF+ YF  ATP+ ELG
Sbjct:  467 SIAAYVISMAKVPSDVLAVHLLLKEAG----------CPF-TLPVAPLFETLDDLNNADDVMTQLLGIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYRAQDALIKTCEKAGITLTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKFGLPEVTISSLALYAGAILEANLLPPPEPKKE-WIEVMDLLSDASCDMYRSYVRENPEFVRYFRAATPELELG 691          
The following BLAST results are available for this feature:
BLAST of FC930444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_SHIDS2.308e-5447.72Phosphoenolpyruvate carboxylase OS=Shigella dysent... [more]
CAPP_CITK82.308e-5446.47Phosphoenolpyruvate carboxylase OS=Citrobacter kos... [more]
CAPP_ECO813.014e-5447.72Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_YERE86.715e-5448.13Phosphoenolpyruvate carboxylase OS=Yersinia entero... [more]
CAPP_SHIBS6.715e-5447.30Phosphoenolpyruvate carboxylase OS=Shigella boydii... [more]
CAPP_ACIBT6.715e-5447.72Phosphoenolpyruvate carboxylase OS=Acinetobacter b... [more]
CAPP1_MESCR6.715e-5445.27Phosphoenolpyruvate carboxylase 1 OS=Mesembryanthe... [more]
CAPP_PHOPR8.771e-5447.11Phosphoenolpyruvate carboxylase OS=Photobacterium ... [more]
CAPP_YERPY1.954e-5348.55Phosphoenolpyruvate carboxylase OS=Yersinia pseudo... [more]
CAPP_YERPS1.954e-5348.55Phosphoenolpyruvate carboxylase OS=Yersinia pseudo... [more]

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Properties
Property NameValue
Genbank descriptionC34007F05EF PostHarvC1 Citrus clementina cDNA clone C34007F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930444 ID=FC930444; Name=FC930444; organism=Citrus clementina; type=EST; length=736bp
GGGAGGGAGTGATTCACTTGGGCCATACGTCATTTCTATGGCTTCTAATG
CAAGTGATGTCCTTGCCGTAGAGCTTTTGCAGAAAGACGCCCGACTTGCT
GTTAGTGGTGAGTTAGGGAGACCATGTCCTGGTGGAACGCTACGTGTGGT
TCCTCTGTTTGAGACTGTGACGGACTTGAGAGGAGCTGGTTTGGTGATCA
GGAAATTGTTATCAATTGACTGGTATAGAAAGCACATTATAAAAAACCAT
AACGGGCATCAAGAGGTGATGGTTGGATATTCTGATTCTGGTAAAGATGC
TGGACGCTTCACTGCTGCATGGGAACTATACAAAGCCCAAGAGGATGTTG
TGGCTGCCTGCAATGAGTTTGGTATTAAAGTGACTCTTTTCCATGGGCGA
GGAGGGAGTATTGGCCGTGGTGGTGGCCCTACATATCTTGCCATTCAGTC
TCAACCGCCTGGCTCTGTAATGGGAACACTTCGATCGACTGAGCAAGGGG
AGATGGTGCAGGCCAAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTA
GAGATATACACAACTGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACC
TCCTCGAGAAGAAAAATGGCGTAATCTCATGGAGGAGATCTCAAAAATTA
GTTGCCAGAATTACCGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCC
TACTTTCACGAGGCTACACCCCAGGCTGAACTAGGG
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