FC930447

Overview
NameFC930447
Unique NameFC930447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA5_YEAST (Proteasome component PUP2 OS=Saccharomyces cerevisiae GN=PUP2 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30
Identity = 77/200 (38.50%), Postives = 114/200 (57.00%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG------LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLALKGAQQ 710
            YD   + FSPEGRL+QVEY++EAI    +AIGI +K+GVVL  EK+ TS LL+ S S EK+ +ID H+ CA++G+ +DA  +I  AR  A  +   Y E + VE L QS+CD    + +          RPFGV+ L AG D + G+QL+ ++PSG +  +             + L  ++   ++  E+  L LK  +Q
Sbjct:    8 YDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQ 206          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA7_SCHPO (Probable proteasome subunit alpha type-7 OS=Schizosaccharomyces pombe GN=SPBC106.16 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.722e-30
Identity = 71/190 (37.37%), Postives = 113/190 (59.47%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLAL 695
            YD   ++FSP+GRL QVEY  EA+    +AI +   + +V+  E+K   KL Q  ++ +K+  +D+HV  A AG+ +DA ILI+ ARV+AQ +     +P+ +E L + +   +Q YTQ GG+RPFGVS L AG+D      ++Y ++P+G Y  WK              L++++K+ +SR E+  LA+
Sbjct:    4 YDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKL-QNVSNFQKIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNWKEGLSRDETIHLAV 192          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA3_YEAST (Proteasome component C1 OS=Saccharomyces cerevisiae GN=PRE10 PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.151e-29
Identity = 65/156 (41.67%), Postives = 95/156 (60.90%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK 596
            YD   ++FSP+GR +QVEYA++A+ N  ++IGI   DGVV   EK +TSKLL    +  K+  +D H+ C  +G++ D   L+N  R +A  +   Y+ P+P+      L    Q +T +  +RPFGVS +F G DKN G  LYM +PSG+Y G+K
Sbjct:    8 YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV-KIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKN-GAHLYMLEPSGSYWGYK 161          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA3_MOUSE (Proteasome subunit alpha type-3 OS=Mus musculus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 3.151e-29
Identity = 67/156 (42.95%), Postives = 97/156 (62.18%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG-NYGGW 593
            YD   + FSP+GR++QVEYAM+A+ N+ +AIGI  KDGVV   EK V SKL +   S ++++ +D HV  AVAG+++DA  L + AR +A  +   +   +P++ L   +      YT +  +RPFG SF+   +  N G QLYM DPSG +YG W
Sbjct:    8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEG-SNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYW 162          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA1_DICDI (Proteasome subunit alpha type-1 OS=Dictyostelium discoideum GN=psmA1 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.151e-29
Identity = 66/157 (42.04%), Postives = 99/157 (63.06%), Query Frame = 3
Query:  126 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK 596
            +YDS  T FSP GR++Q+EYAMEA+   G+A+ + SK   VLV  K+ +S+L    +  +K++ +DDHV  A++G+ +DA +L N  R +   Y Y Y+  M VE+LV  + D  Q +TQ  G RP+GV  L AG+D+  G  +Y + PSGN+  +K
Sbjct:    5 QYDSDITTFSPSGRIHQIEYAMEAVKQGGAAVALKSKQFAVLVSLKRSSSEL---GSYQKKIFVVDDHVGIAISGLTADARMLCNYMRNECSNYNYVYESQMRVERLVTKVADKHQVHTQRYGRRPYGVGLLVAGYDQ-LGAHIYQTCPSGNFYDYK 157          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA3_RAT (Proteasome subunit alpha type-3 OS=Rattus norvegicus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 4.116e-29
Identity = 67/156 (42.95%), Postives = 97/156 (62.18%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG-NYGGW 593
            YD   + FSP+GR++QVEYAM+A+ N+ +AIGI  KDGVV   EK V SKL +   S ++++ +D HV  AVAG+++DA  L + AR +A  +   +   +P++ L   +      YT +  +RPFG SF+   +  N G QLYM DPSG +YG W
Sbjct:    8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEG-SNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYW 162          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA3_HUMAN (Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.116e-29
Identity = 67/156 (42.95%), Postives = 97/156 (62.18%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG-NYGGW 593
            YD   + FSP+GR++QVEYAM+A+ N+ +AIGI  KDGVV   EK V SKL +   S ++++ +D HV  AVAG+++DA  L + AR +A  +   +   +P++ L   +      YT +  +RPFG SF+   +  N G QLYM DPSG +YG W
Sbjct:    8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEG-SNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYW 162          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA3_BOVIN (Proteasome subunit alpha type-3 OS=Bos taurus GN=PSMA3 PE=1 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 4.116e-29
Identity = 67/156 (42.95%), Postives = 97/156 (62.18%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG-NYGGW 593
            YD   + FSP+GR++QVEYAM+A+ N+ +AIGI  KDGVV   EK V SKL +   S ++++ +D HV  AVAG+++DA  L + AR +A  +   +   +P++ L   +      YT +  +RPFG SF+   +  N G QLYM DPSG +YG W
Sbjct:    8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEG-SNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYW 162          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA71_DROME (Proteasome subunit alpha type-7-1 OS=Drosophila melanogaster GN=Pros28.1 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.375e-29
Identity = 68/193 (35.23%), Postives = 107/193 (55.44%), Query Frame = 3
Query:  117 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLAL 695
            MS RYD   TIFSP+G L QVEYA EA+    +A+G+   + VVL  EKK  ++L Q      K+  +D+HV  A AG+ +DA I+IN A+V+ Q +    ++P+ +E + + +   KQ YTQ  G RPFG+S L  G+D +    L+ ++PSG +  +K               ++ Y+++    E  ++ L
Sbjct:    1 MSSRYDRAVTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKKSVAQL-QEDRKVRKICMLDNHVVMAFAGLTADARIMINRAQVECQSHRLNVEDPVTLEYITRFIAQLKQKYTQSNGRRPFGISCLIGGFDADGSAHLFQTEPSGIFYEYKANATGRSAKVVREFFEKSYREEEVANEHGAVKL 192          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA6_RAT (Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.197e-28
Identity = 68/180 (37.78%), Postives = 101/180 (56.11%), Query Frame = 3
Query:  120 SRRYDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYK 656
            S  +D   TIFSPEGRLYQVEYA +AI   G +++ +  KD  V+V +KKV  KLL +ST T  ++KI +++ C + G+ +D+   +  AR +A  + Y Y   +PV+ L + + D  Q YTQ   +RP G   +  G D+  G Q+Y  DP+G Y G+K            S L++  K
Sbjct:    6 SAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH-LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVK 184          
The following BLAST results are available for this feature:
BLAST of FC930447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA5_YEAST2.850e-3038.50Proteasome component PUP2 OS=Saccharomyces cerevis... [more]
PSA7_SCHPO3.722e-3037.37Probable proteasome subunit alpha type-7 OS=Schizo... [more]
PSA3_YEAST3.151e-2941.67Proteasome component C1 OS=Saccharomyces cerevisia... [more]
PSA3_MOUSE3.151e-2942.95Proteasome subunit alpha type-3 OS=Mus musculus GN... [more]
PSA1_DICDI3.151e-2942.04Proteasome subunit alpha type-1 OS=Dictyostelium d... [more]
PSA3_RAT4.116e-2942.95Proteasome subunit alpha type-3 OS=Rattus norvegic... [more]
PSA3_HUMAN4.116e-2942.95Proteasome subunit alpha type-3 OS=Homo sapiens GN... [more]
PSA3_BOVIN4.116e-2942.95Proteasome subunit alpha type-3 OS=Bos taurus GN=P... [more]
PSA71_DROME5.375e-2935.23Proteasome subunit alpha type-7-1 OS=Drosophila me... [more]
PSA6_RAT1.197e-2837.78Proteasome subunit alpha type-6 OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionC34007F08EF PostHarvC1 Citrus clementina cDNA clone C34007F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930447 ID=FC930447; Name=FC930447; organism=Citrus clementina; type=EST; length=714bp
AGGGAGTGTGGCCTCTAAAGGAAGATCGTATAATAGCGAAGTCACTGAGC
TTTAACGAAGGGTCGAAGAGCATTACCTTTGAGTTGGCTGACAAAGAATT
ACATTCATAACCAAAAATGTCTCGGAGATATGATAGCCGTACCACAATTT
TCTCCCCTGAAGGCCGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATT
GGAAATGCTGGTAGTGCAATTGGAATATTATCGAAAGATGGGGTTGTCTT
GGTTGGTGAAAAGAAGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCA
CTGAGAAGATGTACAAGATTGATGATCACGTTGCTTGTGCCGTAGCTGGA
ATAATGTCTGATGCGAACATCCTAATCAACACTGCCAGGGTCCAAGCCCA
ACGTTACACATATGCCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTC
AATCTCTTTGTGATACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGC
CCGTTTGGTGTTTCATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTT
CCAACTTTACATGAGTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTG
CTGCTATTGGTGCAAATAACCAGGCTGCACAATCAATCCTCAAACAAGAT
TACAAGGATGATATTTCAAGGGGAGAAAGCAGTTCACTAGCACTGAAAGG
TGCTCAGCAAACCA
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