FC930447

Overview
NameFC930447
Unique NameFC930447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA73_DROVI (Proteasome subunit alpha type-7-1B OS=Drosophila virilis GN=Pros28.1B PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24
Identity = 64/156 (41.03%), Postives = 94/156 (60.26%), Query Frame = 3
Query:  126 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGW 593
            R+D    I+S +G L QVEYA EA+   GS +G+ +K+ VVL  EK+    L Q   ++ K+ KID H+A   AG+ +DA +L++ A+V+AQ +   +  P  VE + + L   KQ YTQ    RPFGVS L  G+D++   +L+ +DPSG Y  W
Sbjct:    3 RFDESVNIYS-DGHLLQVEYAQEAV-RKGSTVGLRTKECVVLGVEKRAIDSL-QIERTSRKIKKIDQHMAMTFAGLTADARVLVSRAQVEAQSHRLNFDRPASVEYITRYLARLKQTYTQSVARRPFGVSCLIGGFDEDGRPRLFQTDPSGIYYEW 155          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA2_YEAST (Proteasome component Y7 OS=Saccharomyces cerevisiae GN=PRE8 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24
Identity = 66/194 (34.02%), Postives = 104/194 (53.61%), Query Frame = 3
Query:  117 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQR-YTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLAL 695
            M+ RY    T FSP G+L Q++YA+ A+    +++GI + +GVV+  EKK +S L  + T + K+  +   +    +G+  D  +L++ +R  A   Y   Y E  P + LV  +    Q  TQ GG+RPFGVS L AG D+  GF LY  DPSG+Y  WK            + L++ + D++   ++  +AL
Sbjct:    1 MTDRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLS-KVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIAL 193          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA6_SCHPO (Probable proteasome subunit alpha type-6 OS=Schizosaccharomyces pombe GN=SPBC646.16 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 61/182 (33.52%), Postives = 98/182 (53.85%), Query Frame = 3
Query:  120 SRRYDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDD 662
            +R +D   T+FSPEGRLYQVEYA +A  NAG +++G+  K+   ++ +KKV  KL+  ST  + ++ I   + C + G ++DA   ++ AR +A  + Y    PMP + L + + +  Q  TQ   +RP GV+      D   G  L+  DP+G Y G+K            + L++ +K D
Sbjct:    4 ARGFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDAST-VKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKD 184          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA3_SPIOL (Proteasome subunit alpha type-3 OS=Spinacia oleracea GN=PAG1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 58/150 (38.67%), Postives = 91/150 (60.67%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG 578
            YD   T FSP+GR++Q+EYA +A+ N+G+A+GI  KDG+VL  EK + SK++    S  +++ +  H   AVAG+ +D   ++  A+ +A  Y   Y E +PV++L   +       T +  LRPFG   +  G+D++ G QLYM +PSG
Sbjct:    8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTAVGIKCKDGIVLGVEKLIQSKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVARAKSEATNYESVYGEAVPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMVEPSG 155          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBR (Proteasome subunit alpha type-1 OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 60/157 (38.22%), Postives = 91/157 (57.96%), Query Frame = 3
Query:  126 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK 596
            +YD+ TT +SP GRL+QVEYA EA+ N  +A+G+   D VVL   K+  + +   S+  EK +K+D+HV  A++G+++D   L    R +   Y Y +    P+  L   +    Q + QF G RPFGV  L AG+D+  G +LY + PSG+   +K
Sbjct:    5 QYDTDTTTWSPTGRLFQVEYANEAVNNGSAAVGVKGADYVVLTALKR--NPVSGLSSYQEKAFKLDEHVGMAISGLVADGRALSRFLRTECMNYRYMHDSDAPLVMLADIVGAKHQRHIQFAGKRPFGVGLLIAGYDRQ-GPRLYQTVPSGDVFDFK 158          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica GN=PAF1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24
Identity = 59/153 (38.56%), Postives = 87/153 (56.86%), Query Frame = 3
Query:  126 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNY 584
            +YD+  T +SP GRL+QVEYAMEA+    + +G+ S+   VL    K  S+L   S+   K++++ DH   A+AG+ +D  +L    R +   + + Y  P+PV +L   L D  Q  TQ    RP+GV  L AG D++ G  LY + PSGNY
Sbjct:    5 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASEL---SSHQRKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQRSWKRPYGVGLLVAGLDES-GAHLYYNCPSGNY 153          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA1_CAEEL (Proteasome subunit alpha type-1 OS=Caenorhabditis elegans GN=pas-6 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24
Identity = 56/150 (37.33%), Postives = 94/150 (62.67%), Query Frame = 3
Query:  126 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPS 575
            +YD   T++SP+GRL+QVEYA+EA+    + +GI S+   V+V  K+  + L   S+  +K+Y+ID H   ++AG++SD  IL    + +   + + Y++ +P+++L +S+    Q  TQ+ G RPFGV  L AG+DK+ G  +  +DPS
Sbjct:    5 QYDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDL---SSHQKKVYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQYYGRRPFGVGILIAGYDKD-GAHIIQTDPS 150          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA3_ARATH (Proteasome subunit alpha type-3 OS=Arabidopsis thaliana GN=PAG1 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.799e-24
Identity = 55/150 (36.67%), Postives = 92/150 (61.33%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG 578
            YD   T FSP+GR++Q+EYA +A+ N+G+ +GI  KDG+V+  EK + SK++    S  +++ +  H   AVAG+ +D   ++  A+ +A+ Y   Y + +PV++L + +       T +  LRPFG   +  G+D++ G QLYM +PSG
Sbjct:    8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMMLPG-SNRRIHSVHRHAGMAVAGLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSG 155          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA6_CAEEL (Proteasome subunit alpha type-6 OS=Caenorhabditis elegans GN=pas-1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 66/199 (33.17%), Postives = 100/199 (50.25%), Query Frame = 3
Query:  120 SRRYDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDY--KDDISRGESSSLALKGAQ 707
            S  +D   TIFSPEGR+YQVEYA +AI +   +A+ +   D  V+  +K+V   L+   T T  +Y+I   V C   G++ DA   I  A+ +A  + Y     MP E L + + D  Q YTQ   +R  G + LF  +D   G ++Y  DP+G Y G K            S L++    K +++  E+  LA++  Q
Sbjct:    6 SAGFDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVT-SVYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLFISYDDEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELAIEALQ 203          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA1_PONAB (Proteasome subunit alpha type-1 OS=Pongo abelii GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.584e-23
Identity = 55/153 (35.95%), Postives = 92/153 (60.13%), Query Frame = 3
Query:  126 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNY 584
            +YD+  T++SP+GR++Q+EYAMEA+    + +G+ SK   VLV  K+  S+L   +   +K+  +D+H+  ++AG+ +DA +L N  R +     + +  P+PV +LV  +    Q  TQ  G RP+GV  L AG+D + G  ++ + PS NY
Sbjct:    5 QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANY 153          
The following BLAST results are available for this feature:
BLAST of FC930447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA73_DROVI1.370e-2441.03Proteasome subunit alpha type-7-1B OS=Drosophila v... [more]
PSA2_YEAST1.370e-2434.02Proteasome component Y7 OS=Saccharomyces cerevisia... [more]
PSA6_SCHPO1.789e-2433.52Probable proteasome subunit alpha type-6 OS=Schizo... [more]
PSA3_SPIOL1.789e-2438.67Proteasome subunit alpha type-3 OS=Spinacia olerac... [more]
PSA1_TRYBR1.789e-2438.22Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSA1_ORYSJ3.052e-2438.56Proteasome subunit alpha type-1 OS=Oryza sativa su... [more]
PSA1_CAEEL3.052e-2437.33Proteasome subunit alpha type-1 OS=Caenorhabditis ... [more]
PSA3_ARATH6.799e-2436.67Proteasome subunit alpha type-3 OS=Arabidopsis tha... [more]
PSA6_CAEEL8.880e-2433.17Proteasome subunit alpha type-6 OS=Caenorhabditis ... [more]
PSA1_PONAB2.584e-2335.95Proteasome subunit alpha type-1 OS=Pongo abelii GN... [more]

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Properties
Property NameValue
Genbank descriptionC34007F08EF PostHarvC1 Citrus clementina cDNA clone C34007F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930447 ID=FC930447; Name=FC930447; organism=Citrus clementina; type=EST; length=714bp
AGGGAGTGTGGCCTCTAAAGGAAGATCGTATAATAGCGAAGTCACTGAGC
TTTAACGAAGGGTCGAAGAGCATTACCTTTGAGTTGGCTGACAAAGAATT
ACATTCATAACCAAAAATGTCTCGGAGATATGATAGCCGTACCACAATTT
TCTCCCCTGAAGGCCGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATT
GGAAATGCTGGTAGTGCAATTGGAATATTATCGAAAGATGGGGTTGTCTT
GGTTGGTGAAAAGAAGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCA
CTGAGAAGATGTACAAGATTGATGATCACGTTGCTTGTGCCGTAGCTGGA
ATAATGTCTGATGCGAACATCCTAATCAACACTGCCAGGGTCCAAGCCCA
ACGTTACACATATGCCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTC
AATCTCTTTGTGATACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGC
CCGTTTGGTGTTTCATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTT
CCAACTTTACATGAGTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTG
CTGCTATTGGTGCAAATAACCAGGCTGCACAATCAATCCTCAAACAAGAT
TACAAGGATGATATTTCAAGGGGAGAAAGCAGTTCACTAGCACTGAAAGG
TGCTCAGCAAACCA
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