FC930447
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA73_DROVI (Proteasome subunit alpha type-7-1B OS=Drosophila virilis GN=Pros28.1B PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24 Identity = 64/156 (41.03%), Postives = 94/156 (60.26%), Query Frame = 3 Query: 126 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGW 593 R+D I+S +G L QVEYA EA+ GS +G+ +K+ VVL EK+ L Q ++ K+ KID H+A AG+ +DA +L++ A+V+AQ + + P VE + + L KQ YTQ RPFGVS L G+D++ +L+ +DPSG Y W Sbjct: 3 RFDESVNIYS-DGHLLQVEYAQEAV-RKGSTVGLRTKECVVLGVEKRAIDSL-QIERTSRKIKKIDQHMAMTFAGLTADARVLVSRAQVEAQSHRLNFDRPASVEYITRYLARLKQTYTQSVARRPFGVSCLIGGFDEDGRPRLFQTDPSGIYYEW 155
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA2_YEAST (Proteasome component Y7 OS=Saccharomyces cerevisiae GN=PRE8 PE=1 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24 Identity = 66/194 (34.02%), Postives = 104/194 (53.61%), Query Frame = 3 Query: 117 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQR-YTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLAL 695 M+ RY T FSP G+L Q++YA+ A+ +++GI + +GVV+ EKK +S L + T + K+ + + +G+ D +L++ +R A Y Y E P + LV + Q TQ GG+RPFGVS L AG D+ GF LY DPSG+Y WK + L++ + D++ ++ +AL Sbjct: 1 MTDRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLS-KVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIAL 193
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA6_SCHPO (Probable proteasome subunit alpha type-6 OS=Schizosaccharomyces pombe GN=SPBC646.16 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24 Identity = 61/182 (33.52%), Postives = 98/182 (53.85%), Query Frame = 3 Query: 120 SRRYDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDD 662 +R +D T+FSPEGRLYQVEYA +A NAG +++G+ K+ ++ +KKV KL+ ST + ++ I + C + G ++DA ++ AR +A + Y PMP + L + + + Q TQ +RP GV+ D G L+ DP+G Y G+K + L++ +K D Sbjct: 4 ARGFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDAST-VKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKD 184
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA3_SPIOL (Proteasome subunit alpha type-3 OS=Spinacia oleracea GN=PAG1 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24 Identity = 58/150 (38.67%), Postives = 91/150 (60.67%), Query Frame = 3 Query: 129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG 578 YD T FSP+GR++Q+EYA +A+ N+G+A+GI KDG+VL EK + SK++ S +++ + H AVAG+ +D ++ A+ +A Y Y E +PV++L + T + LRPFG + G+D++ G QLYM +PSG Sbjct: 8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTAVGIKCKDGIVLGVEKLIQSKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVARAKSEATNYESVYGEAVPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMVEPSG 155
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBR (Proteasome subunit alpha type-1 OS=Trypanosoma brucei rhodesiense PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24 Identity = 60/157 (38.22%), Postives = 91/157 (57.96%), Query Frame = 3 Query: 126 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK 596 +YD+ TT +SP GRL+QVEYA EA+ N +A+G+ D VVL K+ + + S+ EK +K+D+HV A++G+++D L R + Y Y + P+ L + Q + QF G RPFGV L AG+D+ G +LY + PSG+ +K Sbjct: 5 QYDTDTTTWSPTGRLFQVEYANEAVNNGSAAVGVKGADYVVLTALKR--NPVSGLSSYQEKAFKLDEHVGMAISGLVADGRALSRFLRTECMNYRYMHDSDAPLVMLADIVGAKHQRHIQFAGKRPFGVGLLIAGYDRQ-GPRLYQTVPSGDVFDFK 158
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica GN=PAF1 PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24 Identity = 59/153 (38.56%), Postives = 87/153 (56.86%), Query Frame = 3 Query: 126 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNY 584 +YD+ T +SP GRL+QVEYAMEA+ + +G+ S+ VL K S+L S+ K++++ DH A+AG+ +D +L R + + + Y P+PV +L L D Q TQ RP+GV L AG D++ G LY + PSGNY Sbjct: 5 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASEL---SSHQRKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQRSWKRPYGVGLLVAGLDES-GAHLYYNCPSGNY 153
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA1_CAEEL (Proteasome subunit alpha type-1 OS=Caenorhabditis elegans GN=pas-6 PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24 Identity = 56/150 (37.33%), Postives = 94/150 (62.67%), Query Frame = 3 Query: 126 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPS 575 +YD T++SP+GRL+QVEYA+EA+ + +GI S+ V+V K+ + L S+ +K+Y+ID H ++AG++SD IL + + + + Y++ +P+++L +S+ Q TQ+ G RPFGV L AG+DK+ G + +DPS Sbjct: 5 QYDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDL---SSHQKKVYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQYYGRRPFGVGILIAGYDKD-GAHIIQTDPS 150
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA3_ARATH (Proteasome subunit alpha type-3 OS=Arabidopsis thaliana GN=PAG1 PE=1 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 6.799e-24 Identity = 55/150 (36.67%), Postives = 92/150 (61.33%), Query Frame = 3 Query: 129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG 578 YD T FSP+GR++Q+EYA +A+ N+G+ +GI KDG+V+ EK + SK++ S +++ + H AVAG+ +D ++ A+ +A+ Y Y + +PV++L + + T + LRPFG + G+D++ G QLYM +PSG Sbjct: 8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMMLPG-SNRRIHSVHRHAGMAVAGLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSG 155
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA6_CAEEL (Proteasome subunit alpha type-6 OS=Caenorhabditis elegans GN=pas-1 PE=1 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24 Identity = 66/199 (33.17%), Postives = 100/199 (50.25%), Query Frame = 3 Query: 120 SRRYDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDY--KDDISRGESSSLALKGAQ 707 S +D TIFSPEGR+YQVEYA +AI + +A+ + D V+ +K+V L+ T T +Y+I V C G++ DA I A+ +A + Y MP E L + + D Q YTQ +R G + LF +D G ++Y DP+G Y G K S L++ K +++ E+ LA++ Q Sbjct: 6 SAGFDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVT-SVYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLFISYDDEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELAIEALQ 203
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA1_PONAB (Proteasome subunit alpha type-1 OS=Pongo abelii GN=PSMA1 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.584e-23 Identity = 55/153 (35.95%), Postives = 92/153 (60.13%), Query Frame = 3 Query: 126 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNY 584 +YD+ T++SP+GR++Q+EYAMEA+ + +G+ SK VLV K+ S+L + +K+ +D+H+ ++AG+ +DA +L N R + + + P+PV +LV + Q TQ G RP+GV L AG+D + G ++ + PS NY Sbjct: 5 QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANY 153 The following BLAST results are available for this feature:
BLAST of FC930447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 176
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930447 ID=FC930447; Name=FC930447; organism=Citrus clementina; type=EST; length=714bpback to top |