FC930447

Overview
NameFC930447
Unique NameFC930447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA1_MOUSE (Proteasome subunit alpha type-1 OS=Mus musculus GN=Psma1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.584e-23
Identity = 55/153 (35.95%), Postives = 92/153 (60.13%), Query Frame = 3
Query:  126 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNY 584
            +YD+  T++SP+GR++Q+EYAMEA+    + +G+ SK   VLV  K+  S+L   +   +K+  +D+H+  ++AG+ +DA +L N  R +     + +  P+PV +LV  +    Q  TQ  G RP+GV  L AG+D + G  ++ + PS NY
Sbjct:    5 QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANY 153          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA1_MACFA (Proteasome subunit alpha type-1 OS=Macaca fascicularis GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.584e-23
Identity = 55/153 (35.95%), Postives = 92/153 (60.13%), Query Frame = 3
Query:  126 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNY 584
            +YD+  T++SP+GR++Q+EYAMEA+    + +G+ SK   VLV  K+  S+L   +   +K+  +D+H+  ++AG+ +DA +L N  R +     + +  P+PV +LV  +    Q  TQ  G RP+GV  L AG+D + G  ++ + PS NY
Sbjct:    5 QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHRKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANY 153          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA1_HUMAN (Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.584e-23
Identity = 55/153 (35.95%), Postives = 92/153 (60.13%), Query Frame = 3
Query:  126 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNY 584
            +YD+  T++SP+GR++Q+EYAMEA+    + +G+ SK   VLV  K+  S+L   +   +K+  +D+H+  ++AG+ +DA +L N  R +     + +  P+PV +LV  +    Q  TQ  G RP+GV  L AG+D + G  ++ + PS NY
Sbjct:    5 QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANY 153          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA1_DROME (Proteasome subunit alpha type-1 OS=Drosophila melanogaster GN=Pros35 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.584e-23
Identity = 60/153 (39.22%), Postives = 90/153 (58.82%), Query Frame = 3
Query:  126 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNY 584
            +YDS  T++SP+GRL+QVEYAMEA+    + +G+ +KD  VLV   K TS+L  T     K+  IDDH+  ++AG+ +DA +L    R +   Y ++Y    PV +L+ +L +  Q  TQ    RP+GV  L AG+D+  G  +Y   PS  +
Sbjct:    5 QYDSDVTVWSPQGRLHQVEYAMEAVKLGTATVGLKNKDYAVLVALCKPTSELSDTQ---RKIIPIDDHLGISIAGLTADARVLSRYLRSECLNYKHSYDTTYPVSRLITNLGNKMQTTTQRYDRRPYGVGLLVAGYDER-GPHIYQVTPSATF 153          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA1_BOVIN (Proteasome subunit alpha type-1 OS=Bos taurus GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.584e-23
Identity = 55/153 (35.95%), Postives = 92/153 (60.13%), Query Frame = 3
Query:  126 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNY 584
            +YD+  T++SP+GR++Q+EYAMEA+    + +G+ SK   VLV  K+  S+L   +   +K+  +D+H+  ++AG+ +DA +L N  R +     + +  P+PV +LV  +    Q  TQ  G RP+GV  L AG+D + G  ++ + PS NY
Sbjct:    5 QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANY 153          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA1_RAT (Proteasome subunit alpha type-1 OS=Rattus norvegicus GN=Psma1 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23
Identity = 55/153 (35.95%), Postives = 92/153 (60.13%), Query Frame = 3
Query:  126 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNY 584
            +YD+  T++SP+GR++Q+EYAMEA+    + +G+ SK   VLV  K+  S+L   +   +K+  +D+H+  ++AG+ +DA +L N  R +     + +  P+PV +LV  +    Q  TQ  G RP+GV  L AG+D + G  ++ + PS NY
Sbjct:    5 QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHVFQTCPSANY 153          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA4_ENCCU (Probable proteasome subunit alpha type-4 OS=Encephalitozoon cuniculi GN=PRE9 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.756e-23
Identity = 64/176 (36.36%), Postives = 93/176 (52.84%), Query Frame = 3
Query:  138 RTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAG-WDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDD 662
            ++  F+ EGRL QVE+A++ +  AG+ IG +  DGVVL+G  K       T+   EK+Y++ D + C + G+  DA  L   AR++AQ     +    P+  L + +   KQ +TQ+ G RPFGVSFL+AG  D  Y   L  +DPSG    WK              LK D+ +D
Sbjct:    7 KSNTFTDEGRLPQVEFAIKNVSRAGTIIGYVCSDGVVLMGVNKEP-----TNGPMEKIYQLSDSIYCVLCGLFGDAMELKRYARIKAQEVLERFGVECPLTTLCKFVGQRKQAFTQYAGTRPFGVSFLYAGVIDGKYA--LMSTDPSGTSNRWKGMCYGENEEAINRGLKNDFPED 175          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA1_SCHPO (Probable proteasome subunit alpha type-1 OS=Schizosaccharomyces pombe GN=SPAC6G10.04c PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.518e-23
Identity = 59/151 (39.07%), Postives = 90/151 (59.60%), Query Frame = 3
Query:  126 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG 578
            +YD   T +SP+GRL+QVEYA+EAI    + +G++SK   VLV  K+   +L   S+  +K+ +IDDH+  A+AG+  DA +L N  + +A      +  P+PV +L+  + +  Q  TQ  G RP+GV FL  G+D++ G  L    PSG
Sbjct:    5 QYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEEL---SSYQKKLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGRRPYGVGFLVIGYDES-GPHLLEFQPSG 151          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA1_CHICK (Proteasome subunit alpha type-1 OS=Gallus gallus GN=PSMA1 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 54/150 (36.00%), Postives = 89/150 (59.33%), Query Frame = 3
Query:  135 SRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNY 584
            S  T++SP+GR++Q+EYAMEA+    + +G+ SK   VLV  K+  S+L   +   +K+  +D+H+  ++AG+ +DA +L N  R +     + +  P+PV +LV  +    Q  TQ  G RP+GV  L AG+D + G  ++ + PS NY
Sbjct:    7 SDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILYVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANY 152          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA6_YEAST (Proteasome component C7-alpha OS=Saccharomyces cerevisiae GN=SCL1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 58/157 (36.94%), Postives = 84/157 (53.50%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK 596
            YD   TIFSPEGRLYQVEYA +A      +++ +  KD  V++ +KKV  KLL  +T    ++ I   +   V G + DA      A+ +A  + Y Y   MP + L + + +  Q YTQ   +RP GV   F   D+  G  +Y +DP+G Y G+K
Sbjct:   12 YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTT-VSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYK 167          
The following BLAST results are available for this feature:
BLAST of FC930447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA1_MOUSE2.584e-2335.95Proteasome subunit alpha type-1 OS=Mus musculus GN... [more]
PSA1_MACFA2.584e-2335.95Proteasome subunit alpha type-1 OS=Macaca fascicul... [more]
PSA1_HUMAN2.584e-2335.95Proteasome subunit alpha type-1 OS=Homo sapiens GN... [more]
PSA1_DROME2.584e-2339.22Proteasome subunit alpha type-1 OS=Drosophila mela... [more]
PSA1_BOVIN2.584e-2335.95Proteasome subunit alpha type-1 OS=Bos taurus GN=P... [more]
PSA1_RAT3.375e-2335.95Proteasome subunit alpha type-1 OS=Rattus norvegic... [more]
PSA4_ENCCU5.756e-2336.36Probable proteasome subunit alpha type-4 OS=Enceph... [more]
PSA1_SCHPO7.518e-2339.07Probable proteasome subunit alpha type-1 OS=Schizo... [more]
PSA1_CHICK6.364e-2236.00Proteasome subunit alpha type-1 OS=Gallus gallus G... [more]
PSA6_YEAST1.418e-2136.94Proteasome component C7-alpha OS=Saccharomyces cer... [more]

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Properties
Property NameValue
Genbank descriptionC34007F08EF PostHarvC1 Citrus clementina cDNA clone C34007F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930447 ID=FC930447; Name=FC930447; organism=Citrus clementina; type=EST; length=714bp
AGGGAGTGTGGCCTCTAAAGGAAGATCGTATAATAGCGAAGTCACTGAGC
TTTAACGAAGGGTCGAAGAGCATTACCTTTGAGTTGGCTGACAAAGAATT
ACATTCATAACCAAAAATGTCTCGGAGATATGATAGCCGTACCACAATTT
TCTCCCCTGAAGGCCGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATT
GGAAATGCTGGTAGTGCAATTGGAATATTATCGAAAGATGGGGTTGTCTT
GGTTGGTGAAAAGAAGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCA
CTGAGAAGATGTACAAGATTGATGATCACGTTGCTTGTGCCGTAGCTGGA
ATAATGTCTGATGCGAACATCCTAATCAACACTGCCAGGGTCCAAGCCCA
ACGTTACACATATGCCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTC
AATCTCTTTGTGATACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGC
CCGTTTGGTGTTTCATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTT
CCAACTTTACATGAGTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTG
CTGCTATTGGTGCAAATAACCAGGCTGCACAATCAATCCTCAAACAAGAT
TACAAGGATGATATTTCAAGGGGAGAAAGCAGTTCACTAGCACTGAAAGG
TGCTCAGCAAACCA
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