FC930449

Overview
NameFC930449
Unique NameFC930449
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15114 contig Ccv1_Contig15114:12..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930449 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.461e-38
Identity = 80/161 (49.69%), Postives = 112/161 (69.57%), Query Frame = 2
Query:  188 LQPIKSSRPNHLSISASA---SPPYDLNTFKFDPIKESIVSREVTRRYMTDMITYADTDXXXXGAGSAGLSCAYEL-SKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPQRQLFNAVA 658
            + P+KS + ++ +++  A    P  +L   KF PIKE  V R + RRY  DM   A +D    GAGSAGLSCAY L +  P+++I I+E +V+PGGG WL GQL SAMV RKPA  FLD++G+ Y+++ ++VV+KHAALFTST++SK+LA P  ++FNA A
Sbjct:   24 MDPLKSKQQSNATVNKPAFKPEPAVNLTPIKFAPIKEHQVQRAMVRRYFQDMEERAISDVIIVGAGSAGLSCAYALGTARPDLKITILESNVAPGGGCWLGGQLMSAMVCRKPADEFLDQVGVPYEDEGNFVVVKHAALFTSTVLSKVLAMPNVKMFNATA 184          
BLAST of FC930449 vs. ExPASy Swiss-Prot
Match: THI4_THEMA (Putative thiazole biosynthetic enzyme OS=Thermotoga maritima GN=TM_0787 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 33/99 (33.33%), Postives = 61/99 (61.62%), Query Frame = 2
Query:  281 IKESIVSREVTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVI 577
            +++ ++SR +  RY   +    + D    GAG +GL+ AYEL+KN   ++A+ E+  +PGGG W  G +F+ +V+ K    FL E+ I+Y+ ++ ++V+
Sbjct:    3 MRDVLISRLIVERYFEKLRNSLELDVAIVGAGPSGLTAAYELAKN-GFRVAVFEERNTPGGGIWGGGMMFNEIVLEKELENFLKEVEIEYEVKEDHIVV 100          
BLAST of FC930449 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.748e-12
Identity = 40/125 (32.00%), Postives = 68/125 (54.40%), Query Frame = 2
Query:  281 IKESIVSREVTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPQRQLFNAV 655
            ++E  ++R +   Y  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W  G  F+ +VV+  A   LDE GI Y+E +    +  A    +TI SK++ +   ++FN +
Sbjct:    2 LREVTITRAIVESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQDEAREILDEFGIRYEEFEKGYYVADAIEVATTIASKVV-KSGVKIFNMI 124          
BLAST of FC930449 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 40/125 (32.00%), Postives = 67/125 (53.60%), Query Frame = 2
Query:  281 IKESIVSREVTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPQRQLFNAV 655
            +K+ ++SR +   Y  D++   + D    GAG +G+   Y L+K    ++AI E+ +S GGG W  G  F+ +VV++ A   LDE  I Y+E +    +  A    +TI SK + +   ++FN V
Sbjct:    2 LKDVVISRAIVESYFKDLLNNLELDVAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKIVVQEEAKEILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMV 124          
BLAST of FC930449 vs. ExPASy Swiss-Prot
Match: THI4_METTH (Putative thiazole biosynthetic enzyme OS=Methanobacterium thermoautotrophicum GN=MTH_1620 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 38/116 (32.76%), Postives = 62/116 (53.45%), Query Frame = 2
Query:  269 KFDPIKESIVSREVTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSK 616
            K D IK   +SR +   YM D++ Y + D    G G +GL+  Y L++   +++A+ E+ +S GGG W  G +F+ +VV+      LDE GI  +  D    +  +   TST+ S+
Sbjct:    2 KLDDIK---ISRAIVEGYMEDLLDYMEMDVAIGGGGPSGLTAGYYLAR-AGLKVALFERKLSIGGGMWGGGMMFNKIVVQDEGREILDEFGIRSEPYDEGYHVADSVEATSTLCSR 113          
BLAST of FC930449 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 40/125 (32.00%), Postives = 67/125 (53.60%), Query Frame = 2
Query:  281 IKESIVSREVTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPQRQLFNAV 655
            ++E  +SR +   Y  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W  G  F+ +VV++ A   LDE  I Y+E +    +  A    +TI SK + +   ++FN +
Sbjct:    2 LREVTISRAIIESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQEEAREILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMI 124          
BLAST of FC930449 vs. ExPASy Swiss-Prot
Match: THI4_HALSA (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarium GN=VNG_2604G PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 2
Query:  272 FDPIKESIVSREVTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGI--DYDEQDSYVVIKHA 586
            F    E+ V+R +TR++  + +   +TD    G G +GL  A EL+   ++ + IIE++   GGG WL G L + + VR PA   LD+LG+  +YDE++  + +  A
Sbjct:    6 FADANEAEVTRAITRQWTDEFLDDTETDVIIVGGGPSGLMAAKELADR-DVDVTIIEKNNYLGGGFWLGGFLMNKLTVRSPAEAVLDDLGVPYEYDEENDGLAVADA 111          
BLAST of FC930449 vs. ExPASy Swiss-Prot
Match: THI4_HALS3 (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE4651F PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 2
Query:  272 FDPIKESIVSREVTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGI--DYDEQDSYVVIKHA 586
            F    E+ V+R +TR++  + +   +TD    G G +GL  A EL+   ++ + IIE++   GGG WL G L + + VR PA   LD+LG+  +YDE++  + +  A
Sbjct:    6 FADANEAEVTRAITRQWTDEFLDDTETDVIIVGGGPSGLMAAKELADR-DVDVTIIEKNNYLGGGFWLGGFLMNKLTVRSPAEAVLDDLGVPYEYDEENDGLAVADA 111          
BLAST of FC930449 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.349e-11
Identity = 38/125 (30.40%), Postives = 66/125 (52.80%), Query Frame = 2
Query:  281 IKESIVSREVTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPQRQLFNAV 655
            ++E  +SR +   Y  D++     D    GAG +G+   Y L+K    ++AI E+ +S GGG W     F+ +VV++ A   LDE G+DY +  + + +  +    ST+ SK + +   ++FN V
Sbjct:    1 MREIEISRAIVEAYFNDLLQNLQLDIAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSVGGGIWGGAMGFNRVVVQESAREILDEFGVDYSQVGNGLYVLDSIELASTLASKAV-KAGAKIFNMV 123          
The following BLAST results are available for this feature:
BLAST of FC930449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
THI4_UROFA2.461e-3849.69Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI4_THEMA7.971e-1333.33Putative thiazole biosynthetic enzyme OS=Thermotog... [more]
THI4_PYRHO6.748e-1232.00Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRFU1.503e-1132.00Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_METTH1.503e-1132.76Putative thiazole biosynthetic enzyme OS=Methanoba... [more]
THI4_PYRAB2.564e-1132.00Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_HALSA2.564e-1134.58Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_HALS32.564e-1134.58Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_PYRKO3.349e-1130.40Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]

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Properties
Property NameValue
Genbank descriptionC34007F10EF PostHarvC1 Citrus clementina cDNA clone C34007F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930449 ID=FC930449; Name=FC930449; organism=Citrus clementina; type=EST; length=659bp
TCATCACTGCTGCAAATCAAATTACTTCTCATTATCAAACTTCTAAGCAG
CAGGGGAAGGAGGGGTAAAAAAAAAAAACATGGCAGCCTTGGCTTCTACA
GCTTTCGCTCCTTCAGTTTCGTCTACCACCAATAAGCTCTTTGACTCATC
CTTTCATGGGGCTCCCATGTCACCTTCTCTTCTACGTCTTCAACCCATCA
AATCTTCTCGTCCCAACCACTTGTCCATTTCTGCTTCTGCTTCTCCTCCT
TATGACTTGAACACTTTCAAGTTTGACCCCATCAAAGAATCCATTGTTTC
TCGTGAAGTGACGCGCAGGTACATGACGGACATGATCACTTATGCTGACA
CTGATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTTGTGCTTAT
GAGCTCAGCAAAAACCCCAACATTCAGATTGCTATTATCGAACAGTCTGT
TAGCCCCGGCGGTGGCGCGTGGCTCAGTGGACAGCTCTTCTCTGCCATGG
TTGTGCGCAAACCAGCCCACATCTTCCTTGACGAGCTTGGCATCGACTAC
GATGAGCAAGACAGCTATGTTGTGATCAAGCATGCAGCGCTGTTCACCTC
CACTATAATGAGCAAGCTCCTGGCCCGCCCCCAACGTCAGCTCTTTAATG
CAGTGGCAG
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