FC930450

Overview
NameFC930450
Unique NameFC930450
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930450 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.324e-26
Identity = 55/160 (34.38%), Postives = 89/160 (55.62%), Query Frame = 3
Query:  186 RVMASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEPTARSWTQK 623
            + MA +R++KE K+L ++ P   +AGP  ED  F W   I GP  +P+ GG++  T+ FP DYP  PP + F  + FHPN+  +G++C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     +   M++ D+ +Y    R   +K
Sbjct:    3 KAMALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARK 162          
BLAST of FC930450 vs. ExPASy Swiss-Prot
Match: UB2SB_XENLA (Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus laevis GN=ube2s-B PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.324e-26
Identity = 60/150 (40.00%), Postives = 83/150 (55.33%), Query Frame = 3
Query:  201 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEPTARSWTQKYAMG*RLLG 650
            +R+ KE+  L  DPP      P  ED+   Q  I GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+++NG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y   AR  T  +A G  L G
Sbjct:   14 RRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGMFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTDIHAQGTSLRG 163          
BLAST of FC930450 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.324e-26
Identity = 58/157 (36.94%), Postives = 89/157 (56.69%), Query Frame = 3
Query:  195 ASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEPTARSWTQK 623
            A KR++ E K L  +PP    AGP+ E+  F W+A IMGP D+ +  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     + + M++ D+ ++   A+   QK
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 161          
BLAST of FC930450 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.324e-26
Identity = 58/157 (36.94%), Postives = 89/157 (56.69%), Query Frame = 3
Query:  195 ASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEPTARSWTQK 623
            A KR++ E K L  +PP    AGP+ E+  F W+A IMGP D+ +  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     + + M++ D+ ++   A+   QK
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 161          
BLAST of FC930450 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.324e-26
Identity = 58/157 (36.94%), Postives = 89/157 (56.69%), Query Frame = 3
Query:  195 ASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEPTARSWTQK 623
            A KR++ E K L  +PP    AGP+ E+  F W+A IMGP D+ +  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     + + M++ D+ ++   A+   QK
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 161          
BLAST of FC930450 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.632e-25
Identity = 59/147 (40.14%), Postives = 87/147 (59.18%), Query Frame = 3
Query:  204 RILKELKDLQKDPPTSCSAGPVAED--MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKS-DKAKYEPTARSWTQKYAM 632
            R+ KE K++Q++         + +D  +F W A I GPS++PY GGVF +    P  YP +PP+V F TK+FHPN++   G ICLDILK  WSPA T+  V  +I +L+  P PD PL  +  ++ +S D   +   A+ +T+  AM
Sbjct:    7 RLFKEYKEVQREKVADPDIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGFNSMAQMYTRLAAM 153          
BLAST of FC930450 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.131e-25
Identity = 56/133 (42.11%), Postives = 83/133 (62.41%), Query Frame = 3
Query:  198 SKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY 593
            +KR+  EL  L      S SA PV + D+ +W   I GP D+PY+G  F V++ FP +YPF PP + F + ++HPN++ +G+ICLDILKE+WS    +  +LLS+ SLL +PN   PL    A ++ +D  +Y
Sbjct:   10 TKRLQNELLQLLSSTTESISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEEY 142          
BLAST of FC930450 vs. ExPASy Swiss-Prot
Match: UBE2S_RANCA (Ubiquitin-conjugating enzyme E2 S OS=Rana catesbeiana GN=ube2s PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.783e-25
Identity = 59/150 (39.33%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  201 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEPTARSWTQKYAMG*RLLG 650
            +++ KE+  L  DPP      P  ED+   Q +I GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN++SNG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y   AR  T+ +A    L G
Sbjct:   14 RQVYKEVSTLTPDPPEGIKIIPNEEDITDVQVSIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSSNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTEIHAHSSSLRG 163          
BLAST of FC930450 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.635e-25
Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = 3
Query:  186 RVMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 596
            R   SKR+ +EL+ L        +A P  +++F W AT+ GP D+ Y    + +T+ FP DYP+KPP V F T  +HPN++ +G+ICLDILKE W+ +  +  +LLS+ SLL +PN   PL  + A M+ S++ +Y+
Sbjct:   28 RHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYK 163          
BLAST of FC930450 vs. ExPASy Swiss-Prot
Match: UB2SC_XENLA (Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus laevis GN=ube2s-C PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.747e-25
Identity = 58/150 (38.67%), Postives = 83/150 (55.33%), Query Frame = 3
Query:  201 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEPTARSWTQKYAMG*RLLG 650
            +R+ KE+  L  DPP      P  ED+   Q  I GP  +PYA G+F + +    D+P  PPK  F TK+FHPN+++NG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y   A+  T+ +A G  L G
Sbjct:   14 RRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVHIEGPEGTPYAAGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRAKLMTEIHAQGSTLRG 163          
The following BLAST results are available for this feature:
BLAST of FC930450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC7_SCHPO7.324e-2634.38Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UB2SB_XENLA7.324e-2640.00Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus lae... [more]
UB2G2_PONAB7.324e-2636.94Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE7.324e-2636.94Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN7.324e-2636.94Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UBC21_ARATH1.632e-2540.14Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBC11_YEAST2.131e-2542.11Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBE2S_RANCA2.783e-2539.33Ubiquitin-conjugating enzyme E2 S OS=Rana catesbei... [more]
UBE2C_SPISO3.635e-2540.88Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UB2SC_XENLA4.747e-2538.67Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus lae... [more]

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Properties
Property NameValue
Genbank descriptionC34007F11EF PostHarvC1 Citrus clementina cDNA clone C34007F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930450 ID=FC930450; Name=FC930450; organism=Citrus clementina; type=EST; length=718bp
ATATTTGTGTTGAAGGACAACAAAGCAAGGGGTTGATAGAGGAGCGAGGC
GGGGGCGGCTTGACGACCTAGATCTGCTTCACCGTTTCGCTTTCTCGACG
CTATCGCTCTCCGATCCTGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTAA
GGTTCGTTGTAGTTTCAATTTTAATAATCCCTTGAAGAGTCATGGCTTCA
AAGCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTC
TTGCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACAA
TTATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTACC
ATTCATTTTCCTCCTGATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAG
GACCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAGCATCTGTCTTG
ATATCCTTAAAGAACAGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTG
CTCTCTATCTGCTCCTTGCTTACTGATCCAAATCCCGACGACCCTCTTGT
ACCGGAGATTGCCCACATGTACAAGTCCGACAAGGCCAAATATGAACCCA
CGGCCAGGAGCTGGACACAGAAGTATGCCATGGGATGAAGGTTGTTAGGA
TATTGCAGAAAAAGGAGCATTTATTGAAATATGTTGTGTGTGTTGTCTAT
CTATTTTCTTTAACTTGC
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