FC930450

Overview
NameFC930450
Unique NameFC930450
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9509 contig Ccv1_Contig9509:12..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930450 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.401e-30
Identity = 57/145 (39.31%), Postives = 92/145 (63.45%), Query Frame = 3
Query:  195 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EPTARSW 614
            A +R++++ K +++D P   SA P+ +++  W A I+GP+D+PY  G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A +++  K++Y     E   +SW
Sbjct:    5 ARRRLMRDFKRMKEDSPPGVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKETVEKSW 149          
BLAST of FC930450 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.092e-29
Identity = 66/144 (45.83%), Postives = 93/144 (64.58%), Query Frame = 3
Query:  204 RILKELKDLQKDPPTS-CSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEPTARSWTQKYA 629
            RI KEL+D +++  +S     P ++++     TI GP  +PY GG F + I  P  YPF+PPK+ F TKV+HPNI+S +G+ICLDILK+QWSPALT+   L+SI +LL+ P P DP    +A  Y  +   +  TAR WT+ +A
Sbjct:    6 RIQKELQDCERNQDSSGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKNYQVFVSTARYWTETFA 149          
BLAST of FC930450 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 2.059e-28
Identity = 66/150 (44.00%), Postives = 91/150 (60.67%), Query Frame = 3
Query:  192 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEPTARSWTQKYA 629
            +A +RI +E K++ K   TS        V E+    +  I GP D+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:    4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of FC930450 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 2.059e-28
Identity = 66/150 (44.00%), Postives = 91/150 (60.67%), Query Frame = 3
Query:  192 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEPTARSWTQKYA 629
            +A +RI +E K++ K   TS        V E+    +  I GP D+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:    4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of FC930450 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 2.059e-28
Identity = 66/150 (44.00%), Postives = 91/150 (60.67%), Query Frame = 3
Query:  192 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEPTARSWTQKYA 629
            +A +RI +E K++ K   TS        V E+    +  I GP D+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:    4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of FC930450 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.512e-28
Identity = 59/148 (39.86%), Postives = 92/148 (62.16%), Query Frame = 3
Query:  198 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEPTARSWTQKYA 629
            + R+ +EL  L  +PP   +     + M   +A I+G +++PY  GVF + +H P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+ +L  I  L+ +PNPDDPL+ +I+  +K +K  +   AR WT+K+A
Sbjct:    4 TSRLKRELSLLAAEPPPGITCWQDGDRMEDLRAQILGGANTPYEKGVFKLEVHIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPLMADISSEFKYNKPVFFKNARQWTEKHA 151          
BLAST of FC930450 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.587e-28
Identity = 64/144 (44.44%), Postives = 89/144 (61.81%), Query Frame = 3
Query:  204 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPS-DSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEPTARSWTQKYAM 632
            RI+KE + L  +P     A P   +  ++   I G S DSP+ GG F   +    +YP   PKV F TK++HPN++    I LDILK++WSPAL I  VLLSI +LL  PNPDDPL  ++   +K+++A+   TAR+WT+ YAM
Sbjct:    7 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNEAQAIETARAWTRLYAM 150          
BLAST of FC930450 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.587e-28
Identity = 55/134 (41.04%), Postives = 83/134 (61.94%), Query Frame = 3
Query:  195 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 596
            A +R++++ K L  D P   S  P  +++  W A I GP ++P+  G F +T+ F   YP KPP V F +K+FHPNI +NG +CLDIL+ +WSP   ++ +L S+ SLL DPNP  P   + A ++K +  +YE
Sbjct:    5 AKRRLIRDFKRLTSDAPIGISGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYE 138          
BLAST of FC930450 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.991e-28
Identity = 60/148 (40.54%), Postives = 93/148 (62.84%), Query Frame = 3
Query:  198 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEPTARSWTQKYA 629
            + R+ +EL  L  +PP   +     + M   +A I+G +++PY  GVF + +  P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+ VL SI  L+++PNPDDPL+ +I+  +K +K  +   AR WT+K+A
Sbjct:    4 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHA 151          
BLAST of FC930450 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.335e-27
Identity = 61/145 (42.07%), Postives = 88/145 (60.69%), Query Frame = 3
Query:  198 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKS--------DKAKYEPTAR 608
            SKR+  EL +L   P    SA P  +++F+W  TI G  D+ Y    F +++ FP DYP+KPP V F T+ FHPN+++NG+ICLDILK++WSP   +  +L+SI SLL +PN + PL    A ++ +        DK   E T+R
Sbjct:    8 SKRLQSELMNLMMGPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLWSNQDEYKKVLDKRYQEATSR 152          
The following BLAST results are available for this feature:
BLAST of FC930450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC2_KLULA6.401e-3039.31Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBC27_ARATH1.092e-2945.83Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
UBE2K_MOUSE2.059e-2844.00Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN2.059e-2844.00Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN2.059e-2844.00Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBE2T_BOVIN3.512e-2839.86Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]
UE2NL_HUMAN4.587e-2844.44Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UBC2_CRYNE4.587e-2841.04Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBE2T_HUMAN5.991e-2840.54Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBE2C_DICDI1.335e-2742.07Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionC34007F11EF PostHarvC1 Citrus clementina cDNA clone C34007F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930450 ID=FC930450; Name=FC930450; organism=Citrus clementina; type=EST; length=718bp
ATATTTGTGTTGAAGGACAACAAAGCAAGGGGTTGATAGAGGAGCGAGGC
GGGGGCGGCTTGACGACCTAGATCTGCTTCACCGTTTCGCTTTCTCGACG
CTATCGCTCTCCGATCCTGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTAA
GGTTCGTTGTAGTTTCAATTTTAATAATCCCTTGAAGAGTCATGGCTTCA
AAGCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTC
TTGCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACAA
TTATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTACC
ATTCATTTTCCTCCTGATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAG
GACCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAGCATCTGTCTTG
ATATCCTTAAAGAACAGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTG
CTCTCTATCTGCTCCTTGCTTACTGATCCAAATCCCGACGACCCTCTTGT
ACCGGAGATTGCCCACATGTACAAGTCCGACAAGGCCAAATATGAACCCA
CGGCCAGGAGCTGGACACAGAAGTATGCCATGGGATGAAGGTTGTTAGGA
TATTGCAGAAAAAGGAGCATTTATTGAAATATGTTGTGTGTGTTGTCTAT
CTATTTTCTTTAACTTGC
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