FC930452

Overview
NameFC930452
Unique NameFC930452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930452_ssr32 microsatellite FC930452_ssr32:32..43. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15077 contig Ccv1_Contig15077:1..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_PROM1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain NATL1A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.700e-26
Identity = 65/165 (39.39%), Postives = 95/165 (57.58%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            V + +LDGWG  +  ++N +  A TP +D+   + P    L+ A G+ VGLP E  MGNSEVGH  +GAGRI  Q    +   +   K+  +   N    S + G  TLH++GL SDGGVHS ++ L  L++ A+ +G K + LH+ TDGRD    S+  ++ TI
Sbjct:   18 VVLAILDGWGYREEIEHNAVRQASTPVIDALWHAYPHT--LIEASGADVGLPDEQ-MGNSEVGHLTIGAGRIIQQELVRISNTVKENKLITNPALNQFSQSLKKGGGTLHIMGLCSDGGVHSHINHLCGLIEWAASKGLKSVSLHLFTDGRDTSAKSANKYINTI 179          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_SILST (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Silicibacter sp. (strain TM1040) GN=gpmI PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.856e-26
Identity = 67/165 (40.61%), Postives = 97/165 (58.79%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN-YIKPSFET-GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            V + +LDGWG  +P   N  ++A TPT+D+  +S P   RLV  HG  VGLP+   MGNSEVGH  +GAGR+ A     +DLA+  G  Y ++    +I    ET G  HL+GL+SDGGVH  +  +   +K   + G   + LH +TDGRDV   S++ +++ +
Sbjct:    7 VVLCILDGWGSAEPGPANAPYLAKTPTLDAIMQSCPTA-RLV-THGPDVGLPS-GQMGNSEVGHTNIGAGRVVAMDLGQIDLAIEDGSFYDNDALQAFIAKLKETGGAAHLMGLVSDGGVHGHVTHILAAIKAIRDAGVP-VWLHAITDGRDVAPKSALTYLDQL 167          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_PROMA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus GN=gpmI PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.026e-25
Identity = 69/165 (41.82%), Postives = 98/165 (59.39%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            V + +LDGWG  + +  N I+ ADTP MD+  ++ P    L+ A G+ VGLP ++ MGNSEVGH  +GAGRI  Q    +   + S K+ Q     N      ET  TLHL+GL SDGGVHS ++ L  LL+ A  +G +++ +H  TDGRD    SS+ +++ I
Sbjct:   18 VVLTILDGWGHREENINNAINNADTPVMDALWQAYPHT--LIEASGADVGLP-DNQMGNSEVGHLTIGAGRIIQQELVRISNTIRSKKLDQITNLSNLANKLIETDKTLHLVGLCSDGGVHSHINHLCGLLEWAKNKGIQKVAVHAFTDGRDTPAKSSLQYLKII 179          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_PROM3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain MIT 9303) GN=gpmI PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.026e-25
Identity = 65/165 (39.39%), Postives = 96/165 (58.18%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            V + +LDGWG  +  ++N I  A+TP MD+   + P    L+ A G+AVGLP ++ MGNSEVGH  +GAGR+  Q    +   + +G++ Q      +        GTLHL+GL SDGGVHS ++ L  LL  A+  G  ++ LH++TDGRD    S+  ++  I
Sbjct:   18 VVLAILDGWGHREELEHNSIRSAETPIMDALWHAYPHT--LIEASGAAVGLP-DNQMGNSEVGHLTIGAGRVIRQELVRISETVQTGRLGQTPALIALAERLRKSDGTLHLLGLCSDGGVHSHINHLCGLLHWAAAAGLNKVALHLITDGRDTPTQSASNYLHQI 179          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_LISMF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=gpmI PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.340e-25
Identity = 65/165 (39.39%), Postives = 95/165 (57.58%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            VA+++LDG+G+      N +  A+ P  D +  + P     ++A G  VGLP E  MGNSEVGH  +GAGRI  Q    +D A+  G+  +++  N  +         LHL GLLSDGGVHS ++ L  LL+ A ++G K + +H   DGRDV   SS+ ++ET+
Sbjct:    6 VAIIILDGFGKRAETVGNAVAQANKPNFDRYWANFPHGE--LKAAGLDVGLP-EGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETL 167          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_LISIN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria innocua GN=gpmI PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.340e-25
Identity = 65/165 (39.39%), Postives = 95/165 (57.58%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            VA+++LDG+G+      N +  A+ P  D +  + P     ++A G  VGLP E  MGNSEVGH  +GAGRI  Q    +D A+  G+  +++  N  +         LHL GLLSDGGVHS ++ L  LL+ A ++G K + +H   DGRDV   SS+ ++ET+
Sbjct:    6 VAIIILDGFGKRAETVGNAVAQANKPNFDRYWANFPHGE--LKAAGLDVGLP-EGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETL 167          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_CLOD6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium difficile (strain 630) GN=gpmI PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.340e-25
Identity = 61/163 (37.42%), Postives = 97/163 (59.51%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            VA++++DG+G  K  K N I  + TP +D  KK  P    L+ A G  VGLP +  MGNSEVGH  +GAGRI  Q    +  ++  G  + ++       + +  +LH++GLLSDGGVHS +D L+ ++K A ++G +++ +H  TDGRD    S++ + + +
Sbjct:    6 VALIIMDGFGYNKDVKGNAIAESKTPNLDRIKKEYPNT--LINASGLDVGLP-DGQMGNSEVGHTNIGAGRIVYQDLTRITKSIKDGDFFTNKVLCEAMDNAKENSLHVMGLLSDGGVHSHIDHLKAIIKMAKDKGVQKVYVHAFTDGRDTDPQSALEYAKEV 165          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_LISW6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=gpmI PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.750e-25
Identity = 65/165 (39.39%), Postives = 94/165 (56.97%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            VA+++LDG+G+      N +  A+ P  D +    P     ++A G  VGLP E  MGNSEVGH  +GAGRI  Q    +D A+  G+  +++  N  +         LHL GLLSDGGVHS ++ L  LL+ A ++G K + +H   DGRDV   SS+ ++ET+
Sbjct:    6 VAIIILDGFGKRAETVGNAVAQANKPNFDRYWADFPHGE--LKAAGLDVGLP-EGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETL 167          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_LISMO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria monocytogenes GN=gpmI PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.750e-25
Identity = 65/165 (39.39%), Postives = 94/165 (56.97%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            VA+++LDG+G+      N +  A+ P  D +    P     ++A G  VGLP E  MGNSEVGH  +GAGRI  Q    +D A+  G+  +++  N  +         LHL GLLSDGGVHS ++ L  LL+ A ++G K + +H   DGRDV   SS+ ++ET+
Sbjct:    6 VAIIILDGFGKRAETVGNAVAQANKPNFDRYWADFPHGE--LKAAGLDVGLP-EGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETL 167          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_THERP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.985e-25
Identity = 71/165 (43.03%), Postives = 92/165 (55.76%), Query Frame = 1
Query:  133 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSV 621
            + R  +V +VVLDGW        N I  A TP MD  + + P     +R  G  VGLP +D MGNSEVGH  LGAGRI  Q    +DLA+  G  +Q+E F   +  + + G TLHL+GL+ DGGVHS    L  LL+ A+  G  R+ +H  TDGRD    S +
Sbjct:    1 MDRPPMVCLVVLDGWAIGPDYPGNAIRAAHTPVMDRLQATYP--MTTLRCWGRDVGLP-DDQMGNSEVGHLNLGAGRIVYQLITRIDLAIEDGSFFQNEAFQRALDRARQPGRTLHLMGLIGDGGVHSHQRHLLALLELAARAGISRVAVHAFTDGRDTAPTSGI 162          
The following BLAST results are available for this feature:
BLAST of FC930452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_PROM12.700e-2639.392,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SILST7.856e-2640.612,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROMA1.026e-2541.822,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROM31.026e-2539.392,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISMF1.340e-2539.392,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISIN1.340e-2539.392,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOD61.340e-2537.422,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISW61.750e-2539.392,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISMO1.750e-2539.392,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_THERP2.985e-2543.032,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34007G01EF PostHarvC1 Citrus clementina cDNA clone C34007G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930452 ID=FC930452; Name=FC930452; organism=Citrus clementina; type=EST; length=639bp
GGTCCTGGTATTCTCTCTCTGTGTATATCACTTGTTTGTTTGTTAGCTTT
CTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGA
TGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATT
GTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTA
TAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGT
CTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGG
CTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACT
CGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTC
TGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCG
TCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGG
AGTACACTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGTG
AGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGAT
GTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATT
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