FC930452

Overview
NameFC930452
Unique NameFC930452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_PELCD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.270e-22
Identity = 60/162 (37.04%), Postives = 89/162 (54.94%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSF--ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFV 630
            VA+V+LDGWG     ++N +  ADTP + +  +S P     + A G  VGLP +  MGNSEVGH  +GAGR   Q    + L++     +++     +        G LHL+GLLSDGGVHS ++ L  L++ A   G +++ +H   DGRD    S  G++
Sbjct:    9 VALVILDGWGINPVCEHNAVCQADTPRLRALLESWPHA--RIGASGRDVGLP-DGQMGNSEVGHLNIGAGRTVYQDLTRISLSIEEDTFFENTELRKVMQQVVESQGKLHLMGLLSDGGVHSHMEHLYALVEMARRAGVEQVCIHAFMDGRDTPPQSGAGYL 167          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_MAGSM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Magnetococcus sp. (strain MC-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.270e-22
Identity = 67/169 (39.64%), Postives = 91/169 (53.85%), Query Frame = 1
Query:  130 QLSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFV 630
            Q  R   + +V+LDGWG     + N I  A TP MD +  + P     VR  G  VGLP +  MGNSEVGH  LGAGR+  Q    V  A+  G    ++   + I+ + E G  +HL GLLS GGVHS  DQ+   ++ A + GA  I +H L DGRD    S++ ++
Sbjct:    2 QTHRPKPMTLVILDGWGLRDTQENNAIANASTPHMDDWLANRPHAQ--VRTSGRDVGLP-DGQMGNSEVGHLNLGAGRVVYQEFTRVSCAIEDGSFMHNQVLLDAIRAANEAGGAVHLYGLLSPGGVHSHQDQILAAVQCAKQNGASEIYIHALLDGRDTPPQSAMEYM 167          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_AKKM8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=gpmI PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.270e-22
Identity = 70/175 (40.00%), Postives = 94/175 (53.71%), Query Frame = 1
Query:  133 LSRNNIVAVVVLDGWGEYK--PD---KYNCIHV-ADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            +S    V +V+ DGWG     PD   +Y    V ADTP  D    + P    L+ A G  VGLP +  MGNSEVGH  LGAGR+  Q    VD A+  G + ++           +  LHL+GL+SDGGVHS ++ L  ++K A E G + I +H +TDGRD    S VGF+  +
Sbjct:    1 MSSKKPVVLVIRDGWGRNPLGPDVAKEYGDATVLADTPFTDYLLANYPHS--LLGASGEDVGLP-DGQMGNSEVGHLNLGAGRVVFQDLCRVDNAIKDGSMGENAVLKTAFSQAASSRLHLLGLVSDGGVHSHINHLIGIVKYAYEAGVRDICIHAITDGRDCSPTSGVGFIRQL 172          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_CYAP8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Cyanothece sp. (strain PCC 8801) GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.883e-22
Identity = 66/162 (40.74%), Postives = 85/162 (52.47%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFV 630
            V +V+LDGWG  +  + N I +A TP MD    S P    L+   G  VGLP    MGNSEVGH  LGAGRI  Q    +  A+    + ++     I          LHLIGL SDGGVHS LD L  LL+ A E+   ++ +H++TDGRD      +  V
Sbjct:    9 VVLVILDGWGYRQSTEANAIALAKTPVMDCLWTSYPRT--LIHTSGKDVGLPN-GQMGNSEVGHLNLGAGRIVPQELVRISDAVEDKSLLRNPALVNICQEVRDRQSKLHLIGLCSDGGVHSHLDHLIGLLELAKEQHLDQVCIHVITDGRDTNTNEGINAV 167          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_SYNJB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.989e-22
Identity = 66/161 (40.99%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVL--DGSSV 621
            V +V+LDGWG       N +  A+TP +DS   + P    L++A G AVGLP    MGNSEVGH  LGAGR+  Q    +  A+ +G ++QD     +        G  H +GL S+GGVHS +D L  LLK A++       +H +TDGRD L  DG+ V
Sbjct:    9 VVLVILDGWGYRDALDGNAVLAAETPVLDSLWAAYPHT--LLQASGRAVGLPA-GQMGNSEVGHLTLGAGRVVPQELVRISDAIETGSLFQDPLLMQVCRQLRERGGRFHFVGLCSEGGVHSHIDHLYGLLKLAAQAEIPAY-VHAITDGRDTLPRDGARV 165          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_SHEAM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.989e-22
Identity = 59/160 (36.88%), Postives = 91/160 (56.88%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSF--ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVG 624
            +A+++LDGWG  +  + N I  A+TP +D+ K + P    L+   G  VGLP +  MGNSEVGH  LG+GRI  Q    +  A+  G+   +        +     G +H++GLLS GGVHS  + ++ +++ A++RGA ++ LH   DGRD    S+ G
Sbjct:    7 LALLILDGWGYREDQESNAIFHANTPVLDNLKANYPNG--LISGSGHDVGLP-DGQMGNSEVGHINLGSGRIVYQELTRISKAIEDGEFDDNPALCKAVDAAIAANGAVHIMGLLSPGGVHSHEEHIEAMIRMAAKRGATKVYLHAFLDGRDTPPRSAKG 163          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_RHOSK (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.989e-22
Identity = 62/162 (38.27%), Postives = 85/162 (52.47%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFV 630
            V + +LDGWG     + N + +ADTPT D    + P    +   HG  VGLP    MGNSEVGH  +GAGR+ A     +DLA+  G   Q+        K     GT HL+G++SDGGVH  +  L   ++  +  G   + +H +TDGRDV   S+  FV
Sbjct:    7 VVLCILDGWGLRAEREANAVALADTPTFDRLMATCPNATLVT--HGPDVGLP-RGQMGNSEVGHTNIGAGRVVAMDLGAIDLAIEEGSFPQNPALRDFIAKVKANGGTAHLMGVVSDGGVHGHIQHLISAVEVLAGEGIP-VVIHAITDGRDVAPTSAGEFV 164          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_RHOS1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.989e-22
Identity = 62/162 (38.27%), Postives = 85/162 (52.47%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFV 630
            V + +LDGWG     + N + +ADTPT D    + P    +   HG  VGLP    MGNSEVGH  +GAGR+ A     +DLA+  G   Q+        K     GT HL+G++SDGGVH  +  L   ++  +  G   + +H +TDGRDV   S+  FV
Sbjct:    7 VVLCILDGWGLRAEREANAVALADTPTFDRLMATCPNATLVT--HGPDVGLP-RGQMGNSEVGHTNIGAGRVVAMDLGAIDLAIEEGSFPQNPALRDFIAKVKANGGTAHLMGVVSDGGVHGHIQHLISAVEVLAGEGIP-VVIHAITDGRDVAPTSAGEFV 164          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_MYCPU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma pulmonis GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.989e-22
Identity = 62/157 (39.49%), Postives = 86/157 (54.78%), Query Frame = 1
Query:  139 RNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFE--TGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDV 603
            +N  V +VV+DG G  K    N   +A TP  D   K  P  W  ++A G  VGLP E  MGNSEVGH  +GAG+I   G  L++  L       ++ F  +    +    TLHL+GL+S GGVHS  D L  ++  A ++G K++ +H+  DGRDV
Sbjct:    5 KNKKVILVVIDGLGLRKEKIGNAFELAKTPFFDKMFKEFP--WSFIQASGKFVGLP-EGQMGNSEVGHLNIGAGQIVYTGLSLINKDLEEKNFINNKAFLEVIEDVKKNNSTLHLMGLVSPGGVHSLEDHLFEIIDVAYQKGLKKVSVHVFGDGRDV 158          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_CLOB8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.989e-22
Identity = 63/163 (38.65%), Postives = 94/163 (57.67%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFE-TGT-LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 633
            V +++LDG+G     + N + +A  P +D   +  P     ++A G AVGLP E  MGNSEVGH  +G+GRI  Q    +  A+A G  +++E       + + TG+ LHL+GLLSDGGVHS ++ L+ LL+ A +   + + +H   DGRDV   S   F+E
Sbjct:    6 VMLMILDGFGIAPKSEGNAVTLAKKPNLDKLFEKYPTSQ--LQASGLAVGLP-EGQMGNSEVGHLNIGSGRIVYQELTRITKAIADGDFFENESLKLAMTNAKKTGSSLHLMGLLSDGGVHSHIEHLRGLLEFAKKEEVQNVYVHAFMDGRDVPPSSGQEFIE 165          
The following BLAST results are available for this feature:
BLAST of FC930452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_PELCD5.270e-2237.042,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MAGSM5.270e-2239.642,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_AKKM85.270e-2240.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CYAP86.883e-2240.742,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNJB8.989e-2240.992,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEAM8.989e-2236.882,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOSK8.989e-2238.272,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOS18.989e-2238.272,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCPU8.989e-2239.492,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOB88.989e-2238.652,3-bisphosphoglycerate-independent phosphoglycera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34007G01EF PostHarvC1 Citrus clementina cDNA clone C34007G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930452 ID=FC930452; Name=FC930452; organism=Citrus clementina; type=EST; length=639bp
GGTCCTGGTATTCTCTCTCTGTGTATATCACTTGTTTGTTTGTTAGCTTT
CTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGA
TGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATT
GTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTA
TAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGT
CTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGG
CTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACT
CGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTC
TGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCG
TCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGG
AGTACACTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGTG
AGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGAT
GTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATT
back to top