FC930452

Overview
NameFC930452
Unique NameFC930452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_RHOS4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.174e-21
Identity = 61/162 (37.65%), Postives = 87/162 (53.70%), Query Frame = 1 
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFV 630
            V + +LDGWG     + N + +A+TPT D    + P    +   HG  VGLP    MGNSEVGH  +GAGR+ A     +DLA+  G   Q+        K   ++GT HL+G++SDGGVH  +  L   ++  +  G   + +H +TDGRDV   S+  FV
Sbjct:    7 VVLCILDGWGLRAEREANAVALAETPTFDRLMATCPNATLVT--HGPDVGLP-RGQMGNSEVGHTNIGAGRVVAMDLGAIDLAIEEGSFPQNPALRDFIGKVKAKSGTAHLMGVVSDGGVHGHIQHLISAVEVLAGEGIP-VVIHAITDGRDVAPTSAGEFV 164
[Close]
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_HELAH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter acinonychis (strain Sheeba) GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.174e-21
Identity = 59/159 (37.11%), Postives = 92/159 (57.86%), Query Frame = 1 
Query:  157 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 633
            +++ DG G  K   YN    A  PT D   K+ P  + L+  HG +VGLP +  MGNSEVGH  +GAGR+  Q    + L+L +  +  +  F  +    ++  +HL+GL+SDGGVHS ++   + L    E+  K++ LH++TDGRDV   S++ ++E
Sbjct:    7 LIITDGIGYRKDSDYNAFFHAKKPTYDLMFKTLP--YSLIDTHGLSVGLP-KGQMGNSEVGHMCIGAGRVLYQDLVKISLSLQNDGLKNNTAF--LSAIQKSSVVHLMGLMSDGGVHSHIEHF-IALALECEKFHKKVYLHLITDGRDVAPKSALTYLE 159
[Close]
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_PARDP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Paracoccus denitrificans (strain Pd 1222) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.533e-21
Identity = 59/168 (35.12%), Postives = 89/168 (52.98%), Query Frame = 1 
Query:  133 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFV 630
            ++R   V + +LDGWG     + +    A TP  D   +  P    +    G  VGLP +  MGNSEVGH  +GAGR+ A     +DLA+  G  Y++        K     GT HL+G++SDGGVH  +  +    +  +++G   + +H++TDGRDV   S++GFV
Sbjct:    1 MTRPKPVVLCILDGWGISSRPEQSAPDQARTPNFDRLMRGCPHGTLVT--FGPDVGLP-KGQMGNSEVGHTNIGAGRVVAMDLGQIDLAIEDGSFYENAALGEFIRKLKASGGTAHLMGVVSDGGVHGHIQHVIAAARAVTDKGVP-VVIHVVTDGRDVPPQSAMGFV 164
[Close]
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_SHESH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sediminis (strain HAW-EB3) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.002e-21
Identity = 59/165 (35.76%), Postives = 91/165 (55.15%), Query Frame = 1 
Query:  136 SRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF--NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVG 624
            +R   +A+++LDGWG  +  + N ++ A+TP +D      P    L+   G  VGLP +  MGNSEVGH  +G+GRI  Q    +  A+  G+  +++    +  K     G +H++GLLS GGVHS    ++ + + A  RGAK++ LH   DGRD    S+ G
Sbjct:    3 TRKRPLALLILDGWGYRENTQKNAVYHANTPVLDRLNAQYPNS--LISGSGLDVGLP-DGQMGNSEVGHINIGSGRIVYQELTRIGKAIEDGEFDKNQALVESIDKAIANQGAVHIMGLLSPGGVHSHESHIEAMCRLAVARGAKQVYLHAFLDGRDTPPRSAKG 164
[Close]
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_HELPH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter pylori (strain HPAG1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.002e-21
Identity = 58/159 (36.48%), Postives = 92/159 (57.86%), Query Frame = 1 
Query:  157 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 633
            +++ DG G  K   +N    A  PT D   K+ P  + L+  HG +VGLP E  MGNSEVGH  +GAGR+  Q    + L+L +  +  +  F  +    ++  +HL+GL+SDGGVHS ++   + L    E+  K++ LH++TDGRDV   S++ +++
Sbjct:    7 LIITDGIGYRKDSDHNAFFHAKKPTYDLMFKTLP--YSLIDTHGLSVGLP-EGQMGNSEVGHMCIGAGRVLYQDLVKISLSLQNDDLKNNPAF--LNTIHKSPVVHLMGLMSDGGVHSHIEHF-IALALECEKSHKKVCLHLITDGRDVAPKSALTYLK 159
[Close]
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_FRATW (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.002e-21
Identity = 63/153 (41.18%), Postives = 83/153 (54.25%), Query Frame = 1 
Query:  157 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-----NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            +V+LDGWG    D +N I  A+TPT DS  +  P+   L+ A    VGLP    MGNSEVGH  +G GR+  Q    +D A+       ++       N IK       LHLIGLLS GGVHS  + +  ++K A ++G KR+ LH   DGRD
Sbjct:    7 LVILDGWGYSDSDYFNAIKNANTPTWDSIWQEFPKT--LINASSLEVGLP-RSQMGNSEVGHVNIGCGRVVYQELTKIDKAIEEKTFGDNKAICAAIDNVIK---NDSNLHLIGLLSPGGVHSHEEHIFEMIKIAKQKGIKRLYLHAFLDGRD 153
[Close]
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_FRATO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.002e-21
Identity = 63/153 (41.18%), Postives = 83/153 (54.25%), Query Frame = 1 
Query:  157 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-----NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            +V+LDGWG    D +N I  A+TPT DS  +  P+   L+ A    VGLP    MGNSEVGH  +G GR+  Q    +D A+       ++       N IK       LHLIGLLS GGVHS  + +  ++K A ++G KR+ LH   DGRD
Sbjct:   11 LVILDGWGYSDSDYFNAIKNANTPTWDSIWQEFPKT--LINASSLEVGLP-RSQMGNSEVGHVNIGCGRVVYQELTKIDKAIEEKTFGDNKAICAAIDNVIK---NDSNLHLIGLLSPGGVHSHEEHIFEMIKIAKQKGIKRLYLHAFLDGRD 157
[Close]
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_FRATH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.002e-21
Identity = 63/153 (41.18%), Postives = 83/153 (54.25%), Query Frame = 1 
Query:  157 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-----NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            +V+LDGWG    D +N I  A+TPT DS  +  P+   L+ A    VGLP    MGNSEVGH  +G GR+  Q    +D A+       ++       N IK       LHLIGLLS GGVHS  + +  ++K A ++G KR+ LH   DGRD
Sbjct:    7 LVILDGWGYSDSDYFNAIKNANTPTWDSIWQEFPKT--LINASSLEVGLP-RSQMGNSEVGHVNIGCGRVVYQELTKIDKAIEEKTFGDNKAICAAIDNVIK---NDSNLHLIGLLSPGGVHSHEEHIFEMIKIAKQKGIKRLYLHAFLDGRD 153
[Close]
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_FRATF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.002e-21
Identity = 63/153 (41.18%), Postives = 83/153 (54.25%), Query Frame = 1 
Query:  157 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-----NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            +V+LDGWG    D +N I  A+TPT DS  +  P+   L+ A    VGLP    MGNSEVGH  +G GR+  Q    +D A+       ++       N IK       LHLIGLLS GGVHS  + +  ++K A ++G KR+ LH   DGRD
Sbjct:    7 LVILDGWGYSDSDYFNAIKNANTPTWDSIWQEFPKT--LINASSLEVGLP-RSQMGNSEVGHVNIGCGRVVYQELTKIDKAIEEKTFGDNKAICAAIDNVIK---NDSNLHLIGLLSPGGVHSHEEHIFEMIKIAKQKGIKRLYLHAFLDGRD 153
[Close]
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_BACSU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus subtilis GN=gpmI PE=1 SV=4)

HSP 1 Score: 102.449 bits (254), Expect = 2.002e-21
Identity = 63/152 (41.45%), Postives = 88/152 (57.89%), Query Frame = 1 
Query:  154 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDV 603
            A+++LDG+G       N + +A  P  D +    P +   + A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  +++ F + I  + E    LHL GLLSDGGVHS ++ L  LLK A + G  ++ +H   DGRDV
Sbjct:    7 ALIILDGFGLRNETVGNAVALAKKPNFDRYWNQYPHQ--TLTASGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFERNQTFLDAISNAKENNKALHLFGLLSDGGVHSHINHLFALLKLAKKEGLTKVYIHGFLDGRDV 155
The following BLAST results are available for this feature:
BLAST of FC930452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_RHOS41.174e-2137.652,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELAH1.174e-2137.112,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PARDP1.533e-2135.122,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESH2.002e-2135.762,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELPH2.002e-2136.482,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRATW2.002e-2141.182,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRATO2.002e-2141.182,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRATH2.002e-2141.182,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRATF2.002e-2141.182,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACSU2.002e-2141.452,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34007G01EF PostHarvC1 Citrus clementina cDNA clone C34007G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930452 ID=FC930452; Name=FC930452; organism=Citrus clementina; type=EST; length=639bp
GGTCCTGGTATTCTCTCTCTGTGTATATCACTTGTTTGTTTGTTAGCTTT
CTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGA
TGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATT
GTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTA
TAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGT
CTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGG
CTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACT
CGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTC
TGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCG
TCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGG
AGTACACTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGTG
AGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGAT
GTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATT
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