FC930452

Overview
NameFC930452
Unique NameFC930452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_SHEPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.615e-21
Identity = 59/157 (37.58%), Postives = 88/157 (56.05%), Query Frame = 1
Query:  136 SRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFET-GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            +R   +A+++LDGWG  +  + N +  A+TP +D      P    L+   G  VGLP +  MGNSEVGH  +G+GRI  Q    +  A+  G+   +      I  + E  G +H++GLLS GGVHS  D ++ + + A +RGAK++ LH   DGRD
Sbjct:    3 TRKRPLALLILDGWGYRENTQKNAVFHANTPVLDQLNAKYPNS--LISGSGIDVGLP-DGQMGNSEVGHINIGSGRIVYQELTRISKAIDDGEFDTNPALTKAIDDAIEVNGAVHIMGLLSPGGVHSHQDHIEAMCRLAVKRGAKKVYLHAFLDGRD 156          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_SERP5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Serratia proteamaculans (strain 568) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.615e-21
Identity = 62/157 (39.49%), Postives = 88/157 (56.05%), Query Frame = 1
Query:  136 SRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            S    + +V+LDG+G  +  + N I  A TP MD   +  P +  L+ A G  VGLP +  MGNSEVGH  LGAGRI  Q    +D  +  G  + +      +  + + G  +H++GLLS GGVHS  D +  +++ AS+RGAK + LH   DGRD
Sbjct:    3 SNKKPMVLVILDGYGHREEQQDNAILNAKTPVMDRLWQQQPHQ--LIAASGLDVGLP-DGQMGNSEVGHVNLGAGRIVYQDLTRLDKEIKEGDFFANPTLTAAVDKAVQAGKAVHIMGLLSPGGVHSHEDHILAMIELASQRGAKAVYLHAFLDGRD 156          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_HELHP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter hepaticus GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.615e-21
Identity = 60/161 (37.27%), Postives = 94/161 (58.39%), Query Frame = 1
Query:  157 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            +V+ DG G     +YN  + A  PT D   K+ P  + ++   G +VGLP +  MGNSEVGH  +G+GR+  Q    +  A+   +I  +     ++ + ++  +HL GLLSDGGVHS +  L+ L +  S +G KR+ LH++TDGRDVL  S++ ++  I
Sbjct:    5 LVITDGIGYSDKTQYNAFYHAKKPTYDYLFKNVP--YGMIDTFGLSVGLP-QGQMGNSEVGHMCIGSGRVLYQDLVRISRAIEYDEIKDNPAL--VEVTQQSAVVHLCGLLSDGGVHSHIVHLKALAQILSTQG-KRVYLHLITDGRDVLPKSALNYLADI 159          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_HALOH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.615e-21
Identity = 61/160 (38.12%), Postives = 95/160 (59.38%), Query Frame = 1
Query:  133 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN----YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            ++R   +A++++DG+G  +    N I  A TP +D F +  P+   ++ A G AVGLP E  MGNSEVGH  LGAGRI  Q    ++ A+  G + +++       ++K +     LHL+GLLSDGGVHS ++ L  LL+ A  +  +++ +H + DGRD
Sbjct:    1 MNRPKPLALIIMDGFGLSEKSDGNAIKQAHTPNLDKFFEEYPDT--VLDASGEAVGLP-EGQMGNSEVGHLNLGAGRIVYQDYTRINKAIEEGTLPENDALKNAIQHVKDN--NSALHLMGLLSDGGVHSHINHLFGLLEMARVKNIEKVYVHPILDGRD 155          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_FRATT (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. tularensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.615e-21
Identity = 63/153 (41.18%), Postives = 83/153 (54.25%), Query Frame = 1
Query:  157 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-----NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            +V+LDGWG    D +N I  A+TPT DS  +  P+   L+ A    VGLP    MGNSEVGH  +G GR+  Q    +D A+       ++       N IK       LHLIGLLS GGVHS  + +  ++K A ++G KR+ LH   DGRD
Sbjct:    7 LVILDGWGYSDSDYFNAIKNANTPTWDSIWQEFPKT--LINASSLEVGLP-RSQMGNSEVGHVNIGCGRVVYQELTKIDKAIEEKTFGDNKAICAAIDNAIK---NDSNLHLIGLLSPGGVHSHEEHIFEMIKIAKQKGIKRLYLHAFLDGRD 153          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_FRATN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. novicida (strain U112) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.615e-21
Identity = 63/153 (41.18%), Postives = 83/153 (54.25%), Query Frame = 1
Query:  157 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-----NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            +V+LDGWG    D +N I  A+TPT DS  +  P+   L+ A    VGLP    MGNSEVGH  +G GR+  Q    +D A+       ++       N IK       LHLIGLLS GGVHS  + +  ++K A ++G KR+ LH   DGRD
Sbjct:    7 LVILDGWGYSDSDYFNAIKNANTPTWDSIWQEFPKT--LINASSLEVGLP-RGQMGNSEVGHVNIGCGRVVYQELTKIDKAIEEKTFGDNKAIGAAIDNVIK---NDSNLHLIGLLSPGGVHSHEEHIFEMIKIAKQKGIKRLYLHAFLDGRD 153          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_FRAT1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.615e-21
Identity = 63/153 (41.18%), Postives = 83/153 (54.25%), Query Frame = 1
Query:  157 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-----NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            +V+LDGWG    D +N I  A+TPT DS  +  P+   L+ A    VGLP    MGNSEVGH  +G GR+  Q    +D A+       ++       N IK       LHLIGLLS GGVHS  + +  ++K A ++G KR+ LH   DGRD
Sbjct:    7 LVILDGWGYSDSDYFNAIKNANTPTWDSIWQEFPKT--LINASSLEVGLP-RSQMGNSEVGHVNIGCGRVVYQELTKIDKAIEEKTFGDNKAICAAIDNAIK---NDSNLHLIGLLSPGGVHSHEEHIFEMIKIAKQKGIKRLYLHAFLDGRD 153          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_FRAP2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.615e-21
Identity = 63/153 (41.18%), Postives = 85/153 (55.56%), Query Frame = 1
Query:  157 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLAL-----ASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            +V+LDGWG  + D +N I  A+TPT DS  +  P    L+ A    VGLP    MGNSEVGH  +G GR+  Q    +D A+      + K   D   N I+   +   LHL+GLLS GGVHS  + +  ++K A ++G KR+ LH   DGRD
Sbjct:    7 LVILDGWGYSESDYFNAIKNANTPTWDSIWQDFPRT--LISASSLEVGLP-RGQMGNSEVGHVNIGCGRVVYQELTKIDKAIEEKTFGNNKAICDAIDNVIQ---KDSNLHLMGLLSPGGVHSHEEHIFEMIKIAKQKGVKRVYLHAFLDGRD 153          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_DESAP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Desulforudis audaxviator (strain MP104C) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.615e-21
Identity = 65/171 (38.01%), Postives = 93/171 (54.39%), Query Frame = 1
Query:  133 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            +S N  + +V+LDGWG     + N I  ADTP  + ++   P    +++  G  VGLP    MGNSEVGH  LGAGRI  Q    +  A+  G  +++      I+ S   G  LHL+GLLSDGGVHS +  L  LL+ A     + + +H   DGRDV   +++ +VE +
Sbjct:    1 MSPNTPLVLVILDGWGCGDRVEGNAIAQADTPNWNRYRSVWPRT--VLKCSGEDVGLPP-GQMGNSEVGHLNLGAGRIVYQDLTRITRAVRDGSFFENAVLRTSIEASRRNGHALHLMGLLSDGGVHSHISHLFALLELAGRLDQRSVYVHAFLDGRDVPPANALEYVEAL 168          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_STAAW (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Staphylococcus aureus (strain MW2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.416e-21
Identity = 57/162 (35.19%), Postives = 90/162 (55.56%), Query Frame = 1
Query:  154 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 633
            A+++LDG+   + +  N + +A+ P  D +    P     + A G  VGLP E  MGNSEVGH  +GAGRI  Q    ++ ++  G  ++++  N      +     LH+ GLLSDGGVHS    L  LL+ A ++G +++ +H   DGRDV   S++ ++E
Sbjct:    7 ALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQ--IEASGLDVGLP-EGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIE 165          
The following BLAST results are available for this feature:
BLAST of FC930452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_SHEPA2.615e-2137.582,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SERP52.615e-2139.492,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELHP2.615e-2137.272,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HALOH2.615e-2138.132,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRATT2.615e-2141.182,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRATN2.615e-2141.182,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRAT12.615e-2141.182,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRAP22.615e-2141.182,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_DESAP2.615e-2138.012,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_STAAW3.416e-2135.192,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34007G01EF PostHarvC1 Citrus clementina cDNA clone C34007G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930452 ID=FC930452; Name=FC930452; organism=Citrus clementina; type=EST; length=639bp
GGTCCTGGTATTCTCTCTCTGTGTATATCACTTGTTTGTTTGTTAGCTTT
CTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGA
TGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATT
GTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTA
TAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGT
CTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGG
CTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACT
CGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTC
TGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCG
TCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGG
AGTACACTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGTG
AGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGAT
GTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATT
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