FC930452

Overview
NameFC930452
Unique NameFC930452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_STAAS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Staphylococcus aureus (strain MSSA476) GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.416e-21
Identity = 57/162 (35.19%), Postives = 90/162 (55.56%), Query Frame = 1
Query:  154 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 633
            A+++LDG+   + +  N + +A+ P  D +    P     + A G  VGLP E  MGNSEVGH  +GAGRI  Q    ++ ++  G  ++++  N      +     LH+ GLLSDGGVHS    L  LL+ A ++G +++ +H   DGRDV   S++ ++E
Sbjct:    7 ALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQ--IEASGLDVGLP-EGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIE 165          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_STAAR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Staphylococcus aureus (strain MRSA252) GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.416e-21
Identity = 57/162 (35.19%), Postives = 90/162 (55.56%), Query Frame = 1
Query:  154 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 633
            A+++LDG+   + +  N + +A+ P  D +    P     + A G  VGLP E  MGNSEVGH  +GAGRI  Q    ++ ++  G  ++++  N      +     LH+ GLLSDGGVHS    L  LL+ A ++G +++ +H   DGRDV   S++ ++E
Sbjct:    7 ALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQ--IEASGLDVGLP-EGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIE 165          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_STAAN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Staphylococcus aureus (strain N315) GN=gpmI PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.416e-21
Identity = 57/162 (35.19%), Postives = 90/162 (55.56%), Query Frame = 1
Query:  154 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 633
            A+++LDG+   + +  N + +A+ P  D +    P     + A G  VGLP E  MGNSEVGH  +GAGRI  Q    ++ ++  G  ++++  N      +     LH+ GLLSDGGVHS    L  LL+ A ++G +++ +H   DGRDV   S++ ++E
Sbjct:    7 ALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQ--IEASGLDVGLP-EGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIE 165          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_STAAM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gpmI PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.416e-21
Identity = 57/162 (35.19%), Postives = 90/162 (55.56%), Query Frame = 1
Query:  154 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 633
            A+++LDG+   + +  N + +A+ P  D +    P     + A G  VGLP E  MGNSEVGH  +GAGRI  Q    ++ ++  G  ++++  N      +     LH+ GLLSDGGVHS    L  LL+ A ++G +++ +H   DGRDV   S++ ++E
Sbjct:    7 ALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQ--IEASGLDVGLP-EGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIE 165          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_STAAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Staphylococcus aureus (strain COL) GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.416e-21
Identity = 57/162 (35.19%), Postives = 90/162 (55.56%), Query Frame = 1
Query:  154 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 633
            A+++LDG+   + +  N + +A+ P  D +    P     + A G  VGLP E  MGNSEVGH  +GAGRI  Q    ++ ++  G  ++++  N      +     LH+ GLLSDGGVHS    L  LL+ A ++G +++ +H   DGRDV   S++ ++E
Sbjct:    7 ALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQ--IEASGLDVGLP-EGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIE 165          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_RUTMC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.416e-21
Identity = 61/171 (35.67%), Postives = 94/171 (54.97%), Query Frame = 1
Query:  136 SRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGT-----LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 633
            S+     +++LDGWG  +  + N I +A+TP  D   ++      L+   G  VGLP +  MGNSEVGH  LGAGRI  Q    +   L +G  +++     +K S E        +H++GLLSDGGVHS  +Q+  +L+   ++G K + LH+ TDGRD    S+  +++
Sbjct:    3 SKKQTKLLLILDGWGYSETIQNNAIALANTPVWDKLNQTFLHS--LIHTSGKDVGLPGKQ-MGNSEVGHLNLGAGRIVKQDFTRIYNELQNGDFFRNP---ILKNSLEYANDNNKAVHIMGLLSDGGVHSHEEQIHAMLEMTHKQGCKNVYLHLFTDGRDCAQKSAEKYIQ 167          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_OCEIH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Oceanobacillus iheyensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.416e-21
Identity = 61/159 (38.36%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  133 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF--NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDV 603
            +S+N + A+++LDG+      K N +  A+TP  D F          + A G AVGLP +  MGNSEVGH  +GAGRI  Q    V++++  G  Y+ + F  +          LHL GLLSDGGVHS ++ L  LL+ A +   + + +H   DGRDV
Sbjct:    1 MSQNKLAALIILDGFAIRDEVKGNAVKQANTPNFDRFWNQYAHNQ--LEASGKAVGLP-DGQMGNSEVGHLNIGAGRIVYQSLTRVNVSIDEGDFYEVDAFIKSVEHAKKHDKALHLFGLLSDGGVHSHINHLFALLRLAKKHELENVFVHAFLDGRDV 156          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_MOOTA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Moorella thermoacetica (strain ATCC 39073) GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.416e-21
Identity = 64/168 (38.10%), Postives = 88/168 (52.38%), Query Frame = 1
Query:  142 NNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            N  + +++LDG+G     + N I     P         P     +RA G AVGLP    MGNSEVGH  +GAGRI  Q    +  A+  G  + +      ++ + E G  LHL+GL+SDGGVHS LD L  LL  A   G +R+ +H   DGRDV   S+ G++E +
Sbjct:    6 NRPLMLMILDGFGLGPEGEGNAISQGRLPNYRRLLAGYPHT--RLRASGEAVGLPA-GQMGNSEVGHLNIGAGRIVYQELTRISKAIRDGSFFSNAALVGAVRAAREHGGALHLMGLVSDGGVHSHLDHLYALLDLAKREGLERVYIHAFLDGRDVPPASAAGYLEQV 170          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_HELPJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter pylori J99 GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.416e-21
Identity = 60/160 (37.50%), Postives = 94/160 (58.75%), Query Frame = 1
Query:  157 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 633
            +++ DG G  K   +N    A  PT D   K+ P  + L+  HG +VGLP +  MGNSEVGH  +GAGR+  Q    + L+L + ++  +  F N I+ S     +HL+GL+SDGGVHS ++   + L    E+  K++ LH++TDGRDV   S++ +++
Sbjct:    7 LIITDGIGYRKDSDHNAFFHAKKPTYDLMFKTLP--YSLIDTHGLSVGLP-KGQMGNSEVGHMCIGAGRVLYQDLVRISLSLQNDELKNNPAFLNTIQKSH---VVHLMGLMSDGGVHSHIEHF-IALALECEKSHKKVCLHLITDGRDVAPKSALTYLK 159          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_ACHLI (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Acholeplasma laidlawii (strain PG-8A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.416e-21
Identity = 61/170 (35.88%), Postives = 90/170 (52.94%), Query Frame = 1
Query:  139 RNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF--NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERG-AKRIRLHILTDGRDVLDGSSVGFVETI 639
            +    A++++DG G       N + +ADT  +D+  K  P    +    G AVGLP E  MGNSEVGH  LGAGRI  Q    +++A+  G  ++++ F             LH++GL+SDGGVH+++     L   A ++    R  LH+ TDGRD    S  GFV+T+
Sbjct:    2 KEKFAALIIMDGLGIAPASDSNSVTLADTTYLDNLLKEYPNSTLVTS--GEAVGLP-EGQMGNSEVGHLNLGAGRIVWQSLSRINVAIKDGSFFKNQAFLDAVAHAKKHNSKLHIMGLVSDGGVHAQMGHYLALYDFAKQQNILDRTYLHVFTDGRDTPQESGYGFVKTL 168          
The following BLAST results are available for this feature:
BLAST of FC930452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_STAAS3.416e-2135.192,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_STAAR3.416e-2135.192,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_STAAN3.416e-2135.192,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_STAAM3.416e-2135.192,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_STAAC3.416e-2135.192,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RUTMC3.416e-2135.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_OCEIH3.416e-2138.362,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MOOTA3.416e-2138.102,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELPJ3.416e-2137.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ACHLI3.416e-2135.882,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34007G01EF PostHarvC1 Citrus clementina cDNA clone C34007G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930452 ID=FC930452; Name=FC930452; organism=Citrus clementina; type=EST; length=639bp
GGTCCTGGTATTCTCTCTCTGTGTATATCACTTGTTTGTTTGTTAGCTTT
CTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGA
TGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATT
GTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTA
TAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGT
CTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGG
CTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACT
CGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTC
TGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCG
TCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGG
AGTACACTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGTG
AGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGAT
GTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATT
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