FC930452

Overview
NameFC930452
Unique NameFC930452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_VIBSL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio splendidus (strain LGP32) GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.461e-21
Identity = 60/158 (37.97%), Postives = 91/158 (57.59%), Query Frame = 1
Query:  133 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            +S    +A+V+LDG+G  + ++ N I  A TP +D    + P    L+ A G  VGLP +  MGNSEVGH  +GAGR+  Q    +  ++A G+  Q E   N +  + +    +H++GL+S GGVHS  D +   ++ A+ RGA++I LH   DGRD
Sbjct:    1 MSAKKPMALVILDGYGYREDNQDNAIANAKTPVLDGLIANQPNT--LISASGLDVGLP-DGQMGNSEVGHTNIGAGRVVYQDLTRITKSIADGEFGQTEALVNAVDKAVKVDKAVHIMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHAFLDGRD 155          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_STAS1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.461e-21
Identity = 57/164 (34.76%), Postives = 92/164 (56.10%), Query Frame = 1
Query:  154 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDE----GFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 633
            A+++LDG+   + +  N + +A+ P  D +    P     + A G  VGLP E  MGNSEVGH  +GAGR+  Q    ++ ++  G  ++++      N++K +     LH+ GLLSDGGVHS    L  LL  A ++G +++ +H   DGRDV   S++ ++E
Sbjct:    7 ALIILDGFANRESEHGNAVKLANKPNFDRYYSKYPTTQ--IEASGLDVGLP-EGQMGNSEVGHMNIGAGRVVYQSLTRINKSIEDGDFFENDVLNNAINHVKKN--DSVLHVFGLLSDGGVHSHYKHLFALLDLAKKQGLEKVYVHAFLDGRDVDQKSALKYIE 165          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_RHOPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodopseudomonas palustris GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.461e-21
Identity = 65/159 (40.88%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSV 621
            V +V+LDGWG  +    N +  A TPT D+   + P  +  +R  G +VGLP    MGNSEVGH  +GAGR+  Q    +  A+A+G+I +  G      K     GT HL+GL+S GGVHS  D    L K  ++ G K + LH  TDGRD    S+V
Sbjct:    7 VMLVILDGWGWREDPADNAVLQAKTPTFDALWTNGPHAF--LRTSGKSVGLPN-GQMGNSEVGHLNIGAGRVVMQDLPRISDAIANGEIERAPGLVAFIDKLKASGGTCHLMGLVSPGGVHSLQDHACALAKILAKAGVKTV-LHAFTDGRDTPPKSAV 161          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_PSEP1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.461e-21
Identity = 61/165 (36.97%), Postives = 91/165 (55.15%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN-YIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            + +++LDG+G     ++N I  A+ P  D    + P    L+   G  VGLP +  MGNSEVGH  LGAGR+  Q    V  A+  G+ +++      +  +   G  +H++GLLSDGGVHS  D L  + K A++RGA++I LH   DGRD    S+   +E +
Sbjct:    8 LVLIILDGFGHSDIPEHNAIFAANKPVYDRLCATQPHG--LISGSGMDVGLP-DGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFENPVLTGAVDKAVGAGKAVHILGLLSDGGVHSHQDHLVAMAKLAAQRGAEKIYLHAFLDGRDTPPRSAQSSIELL 169          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_METBU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methanococcoides burtonii (strain DSM 6242) GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.461e-21
Identity = 61/155 (39.35%), Postives = 88/155 (56.77%), Query Frame = 1
Query:  157 VVVLDGWGEYKPD-KYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG-----TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDV 603
            + +LDGWG Y P+ + N IH A+TP +D   ++ P    L+ A G  VGLP E  MGNSEVGH  +GAGR+  Q    ++  + +G  +++     +K + E        LHL+GL S GGVHS +  L+ L++ A + G   I +H   DGRDV
Sbjct:   10 LTILDGWG-YSPEVEGNAIHAANTPNLDDLLETYPNT--LLSASGEDVGLP-EGQMGNSEVGHLNIGAGRVVYQDLTRINRDIGNGDFFKNP---VLKQAIENAKAQGSALHLMGLFSYGGVHSHMKHLRALIEFAKDEGITEIFIHAFLDGRDV 157          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_HELPY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter pylori GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.461e-21
Identity = 60/160 (37.50%), Postives = 94/160 (58.75%), Query Frame = 1
Query:  157 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 633
            +++ DG G  K   +N    A  PT D   K+ P  + L+  HG +VGLP +  MGNSEVGH  +GAGR+  Q    + L+L + ++  +  F N I+ S     +HL+GL+SDGGVHS ++   + L    E+  K++ LH++TDGRDV   S++ +++
Sbjct:    7 LIITDGIGYRKDSDHNAFFHAKKPTYDLMFKTLP--YSLIDTHGLSVGLP-KGQMGNSEVGHMCIGAGRVLYQDLVKISLSLQNDELKNNPAFLNTIQKS---PVVHLMGLMSDGGVHSHIEHF-IALALECEKSHKKVCLHLITDGRDVAPKSALTYLK 159          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_BACA2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus amyloliquefaciens (strain FZB42) GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.461e-21
Identity = 63/152 (41.45%), Postives = 87/152 (57.24%), Query Frame = 1
Query:  154 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDV 603
            A+++LDG+G       N +  A  P  D +    P +   + A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  +++ F + IK + +    LHL GLLSDGGVHS ++ L  LLK A   G  ++ +H   DGRDV
Sbjct:    7 ALIILDGFGLRNETVGNAVAQAKKPNFDRYWNQYPHQ--TLTASGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFERNQTFLDAIKNAKDNDKALHLFGLLSDGGVHSHINHLFALLKLAKSEGLTKVYIHGFLDGRDV 155          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_WOLSU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Wolinella succinogenes GN=gpmI PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.826e-21
Identity = 65/158 (41.14%), Postives = 85/158 (53.80%), Query Frame = 1
Query:  157 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFV 630
            +++ DG G      +N    A  PT DS   SAP    L+  HG +VGLP E  MGNSEVGH  +GAGRI  Q    + LAL  G +  ++    +  S     +HL GL SDGGVHS ++ L  L +  S  G   + LH++TDGRDV   SS  F+
Sbjct:    7 LIITDGIGHKPSSPHNAFTQAKKPTYDSLFASAPHA--LLSTHGLSVGLP-EGQMGNSEVGHMCIGAGRILYQDLVKISLALKDGSL--EKNPTLLGFSSRAKRIHLAGLASDGGVHSHMEHLLGLAQIFSRLG-HEVLLHLITDGRDVSPTSSKEFI 158          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_MYCCT (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=gpmI PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 5.826e-21
Identity = 60/167 (35.93%), Postives = 90/167 (53.89%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEG----FNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            + + +LDGWG  +PDK N +  A+   +   K++ P  W    A G  VGLP E+ MGNSEVGH  LGAGRI  +    ++    +  I +++     F Y+K +     LHL+GL S+GGVHS  D +  + K A   G   I+  ++TDGRD     +  F++ +
Sbjct:    7 ILLAILDGWGLAEPDKGNAVDNANMIFVKQLKQTYP--WLKAHASGKWVGLP-ENQMGNSEVGHIHLGAGRINLESLAKLNHETKTNNIAKNDEIVKTFEYVKKN--NSALHLMGLFSNGGVHSHFDHMIAIYKAAIVYGITNIKFDLITDGRDTKPKLAYDFIKNL 168          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_VIBVY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio vulnificus (strain YJ016) GN=gpmI PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.609e-21
Identity = 62/172 (36.05%), Postives = 94/172 (54.65%), Query Frame = 1
Query:  133 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGT-----LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 633
            +S    +A+V+LDG+G  +    N I  A TP MD+   + P    L+ A G  VGLP +  MGNSEVGH  +GAGR+  Q    +  ++  G+  Q      +  + +T       +H++GL+S GGVHS  D +   ++ A+ERGA++I LH   DGRD    S+ G ++
Sbjct:    1 MSAKKPLALVILDGYGYREDTASNAIANAKTPVMDALIANQPNT--LISASGMDVGLP-DGQMGNSEVGHTNIGAGRVVYQDLTRITKSILDGEFQQTAA---LVEAIDTAVKAEKAVHIMGLMSPGGVHSHEDHILAAVEMAAERGAEKIYLHCFLDGRDTPPRSAEGSLQ 166          
The following BLAST results are available for this feature:
BLAST of FC930452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_VIBSL4.461e-2137.972,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_STAS14.461e-2134.762,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOPA4.461e-2140.882,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEP14.461e-2136.972,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_METBU4.461e-2139.352,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELPY4.461e-2137.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACA24.461e-2141.452,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_WOLSU5.826e-2141.142,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCCT5.826e-2135.932,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBVY7.609e-2136.052,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34007G01EF PostHarvC1 Citrus clementina cDNA clone C34007G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930452 ID=FC930452; Name=FC930452; organism=Citrus clementina; type=EST; length=639bp
GGTCCTGGTATTCTCTCTCTGTGTATATCACTTGTTTGTTTGTTAGCTTT
CTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGA
TGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATT
GTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTA
TAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGT
CTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGG
CTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACT
CGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTC
TGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCG
TCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGG
AGTACACTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGTG
AGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGAT
GTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATT
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