FC930452

Overview
NameFC930452
Unique NameFC930452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_PROMM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain MIT 9313) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.899e-25
Identity = 64/157 (40.76%), Postives = 93/157 (59.24%), Query Frame = 1
Query:  136 SRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            SR   V + +LDGWG  +  ++N I  A+TP MD+   + P    L+ A G+AVGLP ++ MGNSEVGH  +GAGR+  Q    +   + +G++ Q      +        GTLHL+GL SDGGVHS ++ L  LL  A+  G  ++ +H++TDGRD
Sbjct:   13 SRVAPVVLAILDGWGHREEVEHNSIRSAETPIMDALWHAYPHT--LIEASGAAVGLP-DNQMGNSEVGHLTIGAGRVIRQELVRISETVQAGRLGQTPALIALAERLRKSDGTLHLLGLCSDGGVHSHINHLCGLLHWAAAAGLNKVAVHLITDGRD 166          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI1_METAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Methanosarcina acetivorans GN=gpmI1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.092e-25
Identity = 66/163 (40.49%), Postives = 98/163 (60.12%), Query Frame = 1
Query:  157 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYI-KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            +++LDGWG  + ++ N +  A TP +D   K  P  W L+ A G AVGLP E  MGNSE GH  +GAGRI  Q    +++++ +G  +++  F N I K      +LHLIGL+S GGVHS    L  L+K A E+G K++ +H   DGRDV   +++G ++ +
Sbjct:   10 LIILDGWGYREVEEGNAVLSAGTPNLDRLVKDYP--WCLLEASGGAVGLP-EGMMGNSEDGHLNIGAGRIVYQNLTRINISIRNGDFFKNPVFLNAISKVKANDSSLHLIGLVSCGGVHSYTPHLHALIKLAKEKGLKKVYIHAFLDGRDVPPKTALGDIKKL 169          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_SYNPX (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. (strain WH8102) GN=gpmI PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.686e-25
Identity = 63/165 (38.18%), Postives = 93/165 (56.36%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFE--TGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            V + +LDGWG     ++N I   DTP M++   + P    L++A GS VGLP +  MGNSEVGH  +GAGRI  Q    +   +   ++        +    +  TGTLHL+GL SDGGVHS ++ L  L+  A+  G K++ +H +TDGRD    S++G +  +
Sbjct:   18 VVLTILDGWGHRNDSEHNAIRQGDTPVMEALWHAYPHA--LIQASGSHVGLP-DHQMGNSEVGHLTIGAGRIIRQELVRISDTVRDDQLNNTPALVELAEHLQNDTGTLHLLGLCSDGGVHSHVNHLCGLIHWAAAAGIKKVAVHAITDGRDTPTQSAMGSITLV 179          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_PROMP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.686e-25
Identity = 69/167 (41.32%), Postives = 96/167 (57.49%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQ----DEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            V + +LDGWG  + +  N I  A+TP MDS   + P    L+ A G+ VGLP    MGNSEVGH  +G+GRI  Q    +   + + ++ Q     E  N IK   + GTLH+ GL SDGGVHS +D L  L+K ASE   +++ +HI+TDGRD    S+  ++  I
Sbjct:   19 VVLAILDGWGHREENLDNAIKNANTPIMDSLWHAYPHT--LINASGADVGLPN-GQMGNSEVGHLTIGSGRIIQQELVRITNVVKNNQLTQVNELKEMANSIKK--KKGTLHITGLCSDGGVHSHIDHLLGLIKWASEEHIEKVAIHIITDGRDTPAKSAYKYIRQI 180          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_MYCMO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma mobile GN=gpmI PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.134e-24
Identity = 65/155 (41.94%), Postives = 89/155 (57.42%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDE----GFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDV 603
            V + V+DG G  +  + N   +A TP  D      P    +++A G  VGLP +D MGNSEVGH  +GAG+I   G  L++  +   K  Q+      FN +K + ET TLHL+GLLSDGGVHS  + L  L++ A E G K + +H+  DGRDV
Sbjct:    5 VILSVIDGLGLREEKQGNAFKLAKTPNFDKLFNEYPNS--VIQASGDYVGLP-DDQMGNSEVGHLNIGAGQIVYTGLSLINKDIKDNKFKQNAKFIAAFNAVKKNNETNTLHLMGLLSDGGVHSHEEHLFKLIEAAHENGLKNVSVHVFGDGRDV 156          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_BACCN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=gpmI PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.482e-24
Identity = 68/162 (41.98%), Postives = 97/162 (59.88%), Query Frame = 1
Query:  154 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 633
            A+++LDG+G  +    N +  A  P  D +    P     + A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  ++E F N IK   E GT LHL GLLSDGGVHS +D +  LL+ A++ G +++ +H   DGRDV   ++ G+++
Sbjct:    6 ALIILDGFGLREETYGNAVAQAKKPNFDRYWNKFPHT--TLTACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQNAIKHVKEKGTALHLFGLLSDGGVHSHIDHMFALLRLAAKEGVEKVYIHAFLDGRDVGPQTAKGYID 164          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_SYNY3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechocystis sp. (strain PCC 6803) GN=gpmI PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.935e-24
Identity = 70/166 (42.17%), Postives = 93/166 (56.02%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPD-KYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            V +V+LDGWG Y+PD + N I  A+TP MDS   + P    LV   G  VGLP +  MGNSEVGH  LGAGR+  Q    +  A+  G  + ++    +  +     G LHLIGL SDGGVHS +D L  L+  A  +G  ++ +H +TDGRD        FV+ I
Sbjct:    9 VVLVILDGWG-YRPDTRANAIAQANTPIMDSLIAAYPNT--LVNTSGKDVGLP-KGQMGNSEVGHLNLGAGRVVPQELVRISDAIEDGTFFDNQALIEVCQRVRDRRGKLHLIGLCSDGGVHSHIDHLLGLIDLAKLQGISQLCIHAITDGRDTPTNEGAHFVQQI 170          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_GRATL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Gracilaria tenuistipitata var. liui GN=gpmI PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.935e-24
Identity = 71/165 (43.03%), Postives = 91/165 (55.15%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            + + +LDGWG  +  K N I +ADTPT+D    S P    L+ A G  VGLP E  MGNSEVGH  +GAGRI  Q    +  ++     + +E  N I  K +F    LHLIGL S+GGVHS +  L  LL  A  R   +I +H +TDGRD     S  F+E I
Sbjct:    4 IILTILDGWGYSENKKGNAIQIADTPTIDKLWNSYPNT--LLNASGRDVGLP-EGQMGNSEVGHTTIGAGRIINQDLVRISKSIEDRSFFNNEAINSICQKINFYNTKLHLIGLCSNGGVHSHIKHLFALLDIAM-RYKIQICIHAITDGRDTSPYGSKIFIEEI 164          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_CHLAD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=gpmI PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.935e-24
Identity = 65/173 (37.57%), Postives = 97/173 (56.07%), Query Frame = 1
Query:  133 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            ++R   V ++++DGWG   P   N   +ADTP +D +  + P  +  + A G  VGLP E  +GNSEVGH  +GAG I  Q    +  A+A G  + +  F     ++K       LHL+GL   GGVH+  D L  LL+ A  +  +R+ LH+  DGRDVL  S++GF++T+
Sbjct:    1 MTRPRPVVLIIMDGWGVAPPGPGNAADLADTPHVDEWMATCP--FTTLGASGLDVGLP-EGQIGNSEVGHLNIGAGFIVYQELTRISKAIADGDFFTNPAFLQAIEHVKQ--HNSALHLMGLFGPGGVHAHEDHLHALLELAHRQQVRRVYLHLFLDGRDVLPRSALGFLDTL 168          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_CELJU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Cellvibrio japonicus (strain Ueda107) GN=gpmI PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.935e-24
Identity = 62/160 (38.75%), Postives = 91/160 (56.88%), Query Frame = 1
Query:  133 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET----GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            +S    V +++LDG+G  +  KYN ++ A TP  D+  K+ P    L+   G AVGLP    MGNSEVGH  +GAGR+  Q    ++ +++ G  + +    Y+K           +H++GLLS+GGVHS  D L  ++  A ERGAK++ LH   DGRD
Sbjct:    1 MSAKKPVVLLILDGYGYSERTKYNAVYAAQTPVYDNLWKTCPNT--LIDTSGMAVGLPA-GQMGNSEVGHTTIGAGRVVYQSFTRINKSISDGDFFTNP--EYVKAIDSAIANDRAVHILGLLSEGGVHSHQDHLYAMINMAVERGAKQVYLHAFLDGRD 155          
The following BLAST results are available for this feature:
BLAST of FC930452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_PROMM3.899e-2540.762,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI1_METAC5.092e-2540.492,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNPX8.686e-2538.182,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROMP8.686e-2541.322,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCMO1.134e-2441.942,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACCN1.482e-2441.982,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNY31.935e-2442.172,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GRATL1.935e-2443.032,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHLAD1.935e-2437.572,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CELJU1.935e-2438.752,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34007G01EF PostHarvC1 Citrus clementina cDNA clone C34007G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930452 ID=FC930452; Name=FC930452; organism=Citrus clementina; type=EST; length=639bp
GGTCCTGGTATTCTCTCTCTGTGTATATCACTTGTTTGTTTGTTAGCTTT
CTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGA
TGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATT
GTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTA
TAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGT
CTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGG
CTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACT
CGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTC
TGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCG
TCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGG
AGTACACTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGTG
AGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGAT
GTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATT
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