FC930452

Overview
NameFC930452
Unique NameFC930452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_YERP3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=gpmI PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.099e-19
Identity = 60/152 (39.47%), Postives = 85/152 (55.92%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            + + +LDG+G  +  + N I  A TP MD   +  P    L+ A G  VGLP +  MGNSEVGH  LGAGRI  Q    +D  +  G  + +      +  + +TG  +H++GLLS GGVHS  D +  +++ A++RGA  I LH   DGRD
Sbjct:    8 LVLTILDGYGHREEQQDNAILNAKTPVMDVLWQQQPHT--LIAASGLDVGLP-DGQMGNSEVGHVNLGAGRIVYQDLTRLDKEIKDGDFFTNPTLTAAVDNAVKTGKAVHIMGLLSAGGVHSHEDHIMAMVELAAKRGATAIYLHAFLDGRD 156          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_VIBHB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=gpmI PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.099e-19
Identity = 59/158 (37.34%), Postives = 86/158 (54.43%), Query Frame = 1
Query:  133 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            +S    +A+V+LDG+G  +    N I  A TP MD+   + P    L+ A G  VGLP +  MGNSEVGH  +GAGR+  Q    +  ++A G+  +         S       +H++GL+S GGVHS  D +   ++ A+ RGA++I LH   DGRD
Sbjct:    1 MSAKKPLALVILDGYGYREDTASNAIANAKTPVMDALIANNPNT--LISASGMDVGLP-DGQMGNSEVGHTNIGAGRVVYQDLTRITKSIADGEFAETAALVEAIDSAVKAEKAVHIMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRD 155          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_PSEAB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=gpmI PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.099e-19
Identity = 58/152 (38.16%), Postives = 81/152 (53.29%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            + +++LDG+G  +   YN I+ A  P  D    + P    L+   G  VGLP +  MGNSEVGH  LGAGR+  Q    V  A+  G+ +++        K       +H++GLLS GGVHS  D L  + + A+ RGA +I LH   DGRD
Sbjct:    8 LVLIILDGFGHSESPDYNAIYAAKKPVWDRLLATQPHG--LISGSGMDVGLP-DGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFENPVIAAAVDKAVAADKAVHILGLLSPGGVHSHEDHLVAMAQMAARRGAGKIYLHAFLDGRD 156          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_SHEB9 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella baltica (strain OS195) GN=gpmI PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.435e-19
Identity = 56/152 (36.84%), Postives = 85/152 (55.92%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            +A+++LDGWG  +    N I  A+TP +D      P    L+   G  VGLP +  MGNSEVGH  LG+GR+  Q    +  A+A  +  Q+    + +  + + G  +H++GLLS GGVHS  + ++ + + A  RGA ++ LH   DGRD
Sbjct:    8 LALLILDGWGYRENTHNNAIFHANTPVLDRLNAQYPHS--LISGSGLDVGLP-DGQMGNSEVGHINLGSGRVVYQELTRISKAIADHEFEQNPALCDAVDSAIKAGGAVHIMGLLSPGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRD 156          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_PSEAE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas aeruginosa GN=gpmI PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.435e-19
Identity = 58/152 (38.16%), Postives = 81/152 (53.29%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            + +++LDG+G  +   YN I+ A  P  D    + P    L+   G  VGLP +  MGNSEVGH  LGAGR+  Q    V  A+  G+ +++        K       +H++GLLS GGVHS  D L  + + A+ RGA +I LH   DGRD
Sbjct:    8 LVLIILDGFGHSESPDYNAIYAAKKPVWDRLLATQPHG--LISGSGMDVGLP-DGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFENPVIAGAVDKAVAADKAVHILGLLSPGGVHSHEDHLVAMAQMAARRGAGKIYLHAFLDGRD 156          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_SHEB8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella baltica (strain OS185) GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.874e-19
Identity = 56/152 (36.84%), Postives = 85/152 (55.92%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            +A+++LDGWG  +    N I  A+TP +D      P    L+   G  VGLP +  MGNSEVGH  LG+GR+  Q    +  A+A  +  Q+    + +  + + G  +H++GLLS GGVHS  + ++ + + A  RGA ++ LH   DGRD
Sbjct:    8 LALLILDGWGYRENTHNNAIFHANTPVLDRLNAQYPHS--LISGSGLDVGLP-DGQMGNSEVGHINLGSGRVVYQELTRISKAIADHEFEQNPALCDAVDSAIKAGGAVHIMGLLSAGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRD 156          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_SHEB5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.874e-19
Identity = 56/152 (36.84%), Postives = 85/152 (55.92%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            +A+++LDGWG  +    N I  A+TP +D      P    L+   G  VGLP +  MGNSEVGH  LG+GR+  Q    +  A+A  +  Q+    + +  + + G  +H++GLLS GGVHS  + ++ + + A  RGA ++ LH   DGRD
Sbjct:    8 LALLILDGWGYRENTHNNAIFHANTPVLDRLNAQYPHS--LISGSGLDVGLP-DGQMGNSEVGHINLGSGRVVYQELTRISKAIADHEFEQNPALCDAVDSAIKAGGAVHIMGLLSAGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRD 156          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_PSEA7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas aeruginosa (strain PA7) GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.874e-19
Identity = 58/152 (38.16%), Postives = 80/152 (52.63%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            + +++LDG+G  +   YN I+ A  P  D    + P    L+   G  VGLP +  MGNSEVGH  LGAGR+  Q    V  A+  G+ + +        K       +H++GLLS GGVHS  D L  + + A+ RGA +I LH   DGRD
Sbjct:    8 LVLIILDGFGHSESPDYNAIYAAKKPVWDRLLATQPHG--LISGSGMDVGLP-DGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFDNPVIASAVDKAVAADKAVHILGLLSPGGVHSHEDHLVAMAQMAARRGAGKIYLHAFLDGRD 156          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_GLUOX (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Gluconobacter oxydans GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.874e-19
Identity = 57/162 (35.19%), Postives = 88/162 (54.32%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFV 630
            V +V+LDG+G  + +  N + +A+TPT D+   ++P  +  ++  G  VGLP +  MGNSEVGH  +GAGR+  Q    +  +   G + Q+        + +   GT HL+GL+S GGVH+  D +  L K  S  G   + +HI +DGRD    S   F+
Sbjct:   10 VMLVILDGFGWREDESDNAVRLANTPTFDTLWATSPHAF--LKTSGEDVGLP-DGQMGNSEVGHLNIGAGRVVMQELPRISRSARDGSLAQNPALLEFIAALKASGGTCHLMGLISPGGVHAHQDHVVALTKIVSAAGVP-VAVHIFSDGRDTAPRSGEDFI 167          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_CLOPE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium perfringens GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.874e-19
Identity = 60/162 (37.04%), Postives = 89/162 (54.94%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFV 630
            V +++LDG+G     + N +  A+ P  D      P     ++A G  VGLP E  MGNSEVGH  +GAGRI  Q    +   +  G  + ++     +  + E  T LHL+GLLS+GGVHS +D L+ LL+ A ++G +++ +H   DGRDV   S   F+
Sbjct:    6 VMLMILDGFGISPNKEGNAVAAANKPNYDRLFNKYPHTE--LQASGLEVGLP-EGQMGNSEVGHLNIGAGRIIYQELTRITKEIKEGTFFTNKALVKAMDEAKENNTSLHLMGLLSNGGVHSHIDHLKGLLELAKKKGLQKVYVHAFMDGRDVAPSSGKDFI 164          
The following BLAST results are available for this feature:
BLAST of FC930452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_YERP31.099e-1939.472,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBHB1.099e-1937.342,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEAB1.099e-1938.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEB91.435e-1936.842,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEAE1.435e-1938.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEB81.874e-1936.842,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEB51.874e-1936.842,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEA71.874e-1938.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GLUOX1.874e-1935.192,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOPE1.874e-1937.042,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34007G01EF PostHarvC1 Citrus clementina cDNA clone C34007G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930452 ID=FC930452; Name=FC930452; organism=Citrus clementina; type=EST; length=639bp
GGTCCTGGTATTCTCTCTCTGTGTATATCACTTGTTTGTTTGTTAGCTTT
CTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGA
TGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATT
GTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTA
TAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGT
CTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGG
CTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACT
CGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTC
TGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCG
TCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGG
AGTACACTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGTG
AGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGAT
GTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATT
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