FC930452

Overview
NameFC930452
Unique NameFC930452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_PSYIN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Psychromonas ingrahamii (strain 37) GN=gpmI PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.175e-19
Identity = 58/161 (36.02%), Postives = 90/161 (55.90%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKY-NCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVG 624
            + ++++DGWG Y+P+   N +  A+TP +D   K       L+ A G  VGLP +  MGNSEVGH  +GAGR   Q    V  +++ G  + ++ F + +  +   G  +H++GL S GGVHS    +   ++ A++RGAK I +H   DGRD    S+ G
Sbjct:    8 LVLLIMDGWG-YRPNMPDNAVANANTPVLDKLCKDYANN--LLSASGMDVGLP-DGQMGNSEVGHTNIGAGRTVYQNLTKVTKSISDGDFFDNKNFVDAVDQAVAAGKAVHIMGLASPGGVHSHDQHIVAAIELAAQRGAKNILVHAFLDGRDTPPRSAAG 164          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_PSE14 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=gpmI PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.175e-19
Identity = 58/152 (38.16%), Postives = 85/152 (55.92%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            + +++LDG+G  +  + N I  A  P MD   ++ P    L+   G  VGLP +  MGNSEVGH  LGAGR+  Q    V  A+  G+ +++      +  +   G  +H++GLLSDGGVHS    L  + + A +RGA++I LH   DGRD
Sbjct:    8 LVLIILDGFGHSESHEGNAILAAKMPVMDRLYETMPNG--LISGSGMDVGLP-DGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFENPTICAAVDKAVGAGKAVHIMGLLSDGGVHSHQGHLVAMAELAVKRGAEKIYLHAFLDGRD 156          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_CAMJJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=gpmI PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.175e-19
Identity = 57/161 (35.40%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  157 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            +++ DG G  K  K+N    A  P+ +   K  P    L++  G AVGLP E  MGNSEVGH  +G+GRI  Q    ++ A+ + ++ ++E  N  K   +   +H+IGL SDGGVHS     + +L+  ++ G   +  H +TDGRDV   S + F++ +
Sbjct:    7 LIITDGIGYNKNSKFNAFEAAKKPSYEKLFKEVPNS--LLKTSGLAVGLP-EGQMGNSEVGHMCIGSGRIIYQNLVRINKAIENKELEKNE--NLQKLLAKCKRVHIIGLYSDGGVHSMDTHFKAMLEICAKNG-NEVFAHAITDGRDVNPKSGLNFIKDL 161          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_MYCPE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma penetrans GN=gpmI PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.453e-19
Identity = 62/167 (37.13%), Postives = 90/167 (53.89%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            V + VLDG+G  K  K N I  A TP MD+  K     +  + A G  VGLP +  +GNSEVGH  +GAGRI   G  L++  + + K   +    E  N+ K +     +H++GLLS GGVHS    +  +++  SE G K + +H+  DGRDV   S +  +E +
Sbjct:    6 VLLAVLDGYGFSKDTKGNAILNAKTPFMDNLVKEYDHCY--IEASGEYVGLP-DGQIGNSEVGHLTIGAGRIVYTGLSLINQDIKTKKFDSNKTLLEAINHAKKN--NSNIHIMGLLSPGGVHSNEQHIFEMIRIVSENGLKPV-IHVFGDGRDVAPQSIISSLERL 166          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_PARD8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=gpmI PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.122e-19
Identity = 60/165 (36.36%), Postives = 86/165 (52.12%), Query Frame = 1
Query:  157 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            +++ DGWG     K + I    TP  D   K+ P     ++A G  VGLP +  MGNSEVGH  +GAGRI  Q    +++A     I ++      ++Y K + +   +H +GL+SDGGVHS L+ L  L   A E G  +  +H   DGRD    S  GF+E +
Sbjct:    7 LIICDGWGIGDKGKDDVIFNTPTPYWDELLKTYPASQ--LQASGENVGLP-DGQMGNSEVGHLNIGAGRIVYQDLVKINIACRENTIMENPEIKRAYSYAKENNKQ--IHFMGLVSDGGVHSSLEHLLKLTDIAKEYGISKAYVHCFMDGRDTDPKSGKGFIEEL 166          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_RHOBA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodopirellula baltica GN=gpmI PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.215e-18
Identity = 61/177 (34.46%), Postives = 89/177 (50.28%), Query Frame = 1
Query:  136 SRNNIVAVVVLDGWGEYKPDKYN---CIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDE----GFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERG--AKRIRLHILTDGRDVLDGSSVGFVETI 639
            +R   V ++V DGWG+    K+N    +H+A+TP  D   +  P    L+   G  VGLP    MGNSEVGH  +GAGRI  Q    +  A+     + +       +++K S   G LHL+GL+SDG VHS L     ++  A   G    ++ +H +TDGRD      + FV  +
Sbjct:    9 TRRRPVVLIVRDGWGQNPDPKWNESNAVHLANTPVDDKLTQEYPSV--LIHTSGEDVGLPA-GVMGNSEVGHQNIGAGRIVDQEVMRITRAIRDDSFFSNPVVTGAIDHVKKS--GGRLHLLGLMSDGRVHSDLQHGIAVIDLAKRNGLTGDQLAIHAITDGRDTSPRGGLKFVSQL 180          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_SHESW (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain W3-18-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.587e-18
Identity = 55/152 (36.18%), Postives = 82/152 (53.95%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            +A+++LDGWG  +    N I  A TP +D      P    L+   G  VGLP +  MGNSEVGH  LG+GRI  Q    +  A++  +   +    + +  +   G  +H++GLLS GGVHS  + ++ + + A  RGA ++ LH   DGRD
Sbjct:    8 IALLILDGWGYRENTHMNAIFHAKTPVLDRLNAQYPHG--LISGSGLDVGLP-DGQMGNSEVGHINLGSGRIVYQELTRISKAISDHEFETNPALCDAVDSAINAGGAVHIMGLLSPGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRD 156          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_SHEPC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=gpmI PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.587e-18
Identity = 55/152 (36.18%), Postives = 82/152 (53.95%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            +A+++LDGWG  +    N I  A TP +D      P    L+   G  VGLP +  MGNSEVGH  LG+GRI  Q    +  A++  +   +    + +  +   G  +H++GLLS GGVHS  + ++ + + A  RGA ++ LH   DGRD
Sbjct:    8 IALLILDGWGYRENTHMNAIFHAKTPVLDRLNAQYPHG--LISGSGLDVGLP-DGQMGNSEVGHINLGSGRIVYQELTRISKAISDHEFETNPALCDAVDSAINAGGAVHIMGLLSPGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRD 156          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_GEOSL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Geobacter sulfurreducens GN=gpmI PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.587e-18
Identity = 57/162 (35.19%), Postives = 80/162 (49.38%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFV 630
            + +++LDGWG       N + +  TP MD      P     +   G AVGLP +  MGNSEVGH  +GAGR+  Q    +  ++  G  + +          +   G LHL GLLSDGGVHS    L  L++ A  +G K + +H   DGRD    S  G++
Sbjct:    5 LVLMILDGWGINPDPSNNAVAIGRTPAMDRLMAEYPSVE--METSGMAVGLP-DGQMGNSEVGHLNIGAGRVVYQDLTRITKSIDDGDFFTNPVLLDCMARVKAAGGRLHLGGLLSDGGVHSHNTHLYALIELARRQGVKDVFVHAFLDGRDTPPSSGAGYL 163          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_SYMTH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Symbiobacterium thermophilum GN=gpmI PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.706e-18
Identity = 59/165 (35.76%), Postives = 84/165 (50.91%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            VA++VLDGWG     + N + +A  P  D      P     + A G AVGL     MG+S VGH  LGAGRI  Q    +  ++  G  Y    +  +  +       LHL+GL+SDGGVHS +D L  L+  A     +R+ +H   DGRDV   S++ ++E +
Sbjct:    8 VALIVLDGWGLNPDPRANAVAMARHPNFDRLMARYPHT--TLTASGEAVGL-LPGQMGDSNVGHLNLGAGRIVYQTLVRIWRSIQDGSFYTLPVWRPVLDRAKQPGKALHLMGLVSDGGVHSHIDHLLALIDLAKRENVERVYVHAFLDGRDVPPQSALPYLERV 169          
The following BLAST results are available for this feature:
BLAST of FC930452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_PSYIN4.175e-1936.022,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSE144.175e-1938.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CAMJJ4.175e-1935.402,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCPE5.453e-1937.132,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PARD87.122e-1936.362,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOBA1.215e-1834.462,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESW1.587e-1836.182,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEPC1.587e-1836.182,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GEOSL1.587e-1835.192,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYMTH2.706e-1835.762,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34007G01EF PostHarvC1 Citrus clementina cDNA clone C34007G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930452 ID=FC930452; Name=FC930452; organism=Citrus clementina; type=EST; length=639bp
GGTCCTGGTATTCTCTCTCTGTGTATATCACTTGTTTGTTTGTTAGCTTT
CTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGA
TGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATT
GTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTA
TAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGT
CTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGG
CTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACT
CGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTC
TGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCG
TCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGG
AGTACACTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGTG
AGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGAT
GTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATT
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