FC930452

Overview
NameFC930452
Unique NameFC930452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_WOLTR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=gpmI PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.537e-13
Identity = 52/156 (33.33%), Postives = 78/156 (50.00%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPD-KYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGS 615
            V + +LDGWG    D KYN I  A+ P       + P     + A G+ VGLP +  +GNSEVGH  + +GR+  Q  + +D  + + +  ++          + G  H++GL+SDGGVHS    +  L    S+   K + +H   DGRD L  S
Sbjct:    6 VVLCILDGWGNGIGDSKYNAISNANPPCWQYISSNYPRC--SLSACGTDVGLP-DGQIGNSEVGHMNICSGRVVMQSLQRIDREIKTIENNKNLRSFISDLKDKNGVCHIMGLVSDGGVHSHQKHISTLANKISQHEIK-VVIHAFLDGRDTLPNS 157          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_UREPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ureaplasma parvum GN=gpmI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.840e-13
Identity = 47/166 (28.31%), Postives = 86/166 (51.81%), Query Frame = 1
Query:  142 NNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            N  + ++++DG G  K D  N +H+A+ PT++    + P     + A    +GL  E+  GNSE+GH  +GAGRI      L D A  +  +   +  + +  + +   +H++G+ S+G VHS  + +  ++K   +    ++ LH+++DGRD        F+E I
Sbjct:    4 NKKIGLIIIDGLGIGKEDNTNAVHLANPPTLNYLINNFPT--LQISAAQQNIGL-LENQAGNSEIGHLTIGAGRII-----LNDNANINNYMKSVDYESAVLSNIKNEIVHIVGMYSNGLVHSNYEHIHWIIKQIIKNN-NQVVLHLISDGRDDYPYGFAQFIEQI 160          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_UREP2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=gpmI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.840e-13
Identity = 47/166 (28.31%), Postives = 86/166 (51.81%), Query Frame = 1
Query:  142 NNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            N  + ++++DG G  K D  N +H+A+ PT++    + P     + A    +GL  E+  GNSE+GH  +GAGRI      L D A  +  +   +  + +  + +   +H++G+ S+G VHS  + +  ++K   +    ++ LH+++DGRD        F+E I
Sbjct:    4 NKKIGLIIIDGLGIGKEDNTNAVHLANPPTLNYLINNFPT--LQISAAQQNIGL-LENQAGNSEIGHLTIGAGRII-----LNDNANINNYMKSVDYESAVLSNIKNEIVHIVGMYSNGLVHSNYEHIHWIIKQIIKNN-NQVVLHLISDGRDDYPYGFAQFIEQI 160          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_UREU1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=gpmI PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.457e-12
Identity = 48/169 (28.40%), Postives = 87/169 (51.48%), Query Frame = 1
Query:  133 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            +S N  +A++++DG G  K D  N +++A+  T++   K+ P     + A    +GL  E+  GNSE+GH  +GAGRI      L D A  +    + +  + +        +H++G+ S+G VHS  + +  ++K   +    ++ LH+++DGRD        F+E I
Sbjct:    1 MSLNKKLALIIIDGLGIGKKDDTNAVYLANPKTLNYLIKNYPTLE--ISAAQQPIGL-LENQAGNSEIGHLTIGAGRII-----LNDNANINSYTKRLDYESLVLNDINNEIVHVVGMYSNGLVHSNYEHIHWIIKELVKNN-NQVVLHLISDGRDDYPYGFAQFIEQI 160          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_TOBBP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Fragment) OS=Tomato big bud phytoplasma GN=gpmI PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.185e-11
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:  286 GSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRLD 519
            G AVGLP +  MGNSEVGH  LGAGR+  Q    ++  +  G  ++++ F  +    +T    LHL+GL+SDGGVHS LD
Sbjct:    1 GEAVGLPAQQ-MGNSEVGHLNLGAGRVVHQSLTYINRKIKDGSFFKNKCFLKVIQHVKTNKSKLHLLGLVSDGGVHSHLD 79          
The following BLAST results are available for this feature:
BLAST of FC930452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_WOLTR1.537e-1333.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_UREPA5.840e-1328.312,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_UREP25.840e-1328.312,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_UREU16.457e-1228.402,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_TOBBP4.185e-1146.252,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34007G01EF PostHarvC1 Citrus clementina cDNA clone C34007G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930452 ID=FC930452; Name=FC930452; organism=Citrus clementina; type=EST; length=639bp
GGTCCTGGTATTCTCTCTCTGTGTATATCACTTGTTTGTTTGTTAGCTTT
CTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGA
TGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATT
GTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTA
TAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGT
CTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGG
CTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACT
CGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTC
TGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCG
TCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGG
AGTACACTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGTG
AGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGAT
GTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATT
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