FC930452

Overview
NameFC930452
Unique NameFC930452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930452_ssr32 microsatellite FC930452_ssr32:32..43. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15077 contig Ccv1_Contig15077:1..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_BACME (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus megaterium GN=gpmI PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.935e-24
Identity = 69/165 (41.82%), Postives = 96/165 (58.18%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            VA+++LDG+     DK N +  A  P  D F    P     ++A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  Q+E     +K + E GT LHL GLLSDGGVHS ++ L  LL+ A   G +++ +H   DGRDV   S+  +++ +
Sbjct:    6 VALIILDGFALRDEDKGNAVTHAKKPNFDRFWNEYPHA--TLQASGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFEQNETLLAAVKHAKEKGTNLHLFGLLSDGGVHSHIEHLYALLRLAKSEGLEKVYIHGFLDGRDVAPQSAETYLKEL 167          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_FLAPJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=gpmI PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.311e-24
Identity = 69/170 (40.59%), Postives = 96/170 (56.47%), Query Frame = 1
Query:  142 NNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            N  V +++LDGWG+    K + I  A+ P ++S  K+ P     +R  G  VGLP E  MGNSEVGH  LGAGRI  Q    ++LA+ +  + Q+    E F Y K + +   +H +GLLSDGGVHS    L+ LL  A   G K+  +H  TDGRDV   S++  +E +
Sbjct:    2 NKKVILMILDGWGKSPDPKVSAIDNANIPFINSLYKNYPSAQ--LRTDGLNVGLP-EGQMGNSEVGHMNLGAGRIVYQDLAKINLAVQNKTLSQEKALKEAFQYAKENNKP--IHFLGLLSDGGVHSHTSHLRGLLDAAQNFGLKKTFIHAFTDGRDVDPKSAIATIENL 166          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_CYAP7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Cyanothece sp. (strain PCC 7424) GN=gpmI PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.311e-24
Identity = 71/165 (43.03%), Postives = 89/165 (53.94%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            V +V+LDGWG  +   YN I VA+TP MDS  ++ P+   L+R  G  VGLP E  MGNSEVGH  +GAGRI  Q    +  A+  G I+Q      +    +   G LHLIGL S GGVHS L  L  LL  A       + +H +TDGRD      V  +E I
Sbjct:    9 VVLVILDGWGYRQTTDYNAIAVANTPVMDSLWEAYPKT--LIRTSGKDVGLP-EGQMGNSEVGHLNIGAGRIVPQELVRITDAIEDGSIFQSPVLINLCDEVKGRGGKLHLIGLSSAGGVHSHLCHLLGLLDLAKLHSVSDVCVHAITDGRDTNPTEGVNVIEAI 170          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_THICR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Thiomicrospira crunogena (strain XCL-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.630e-24
Identity = 63/172 (36.63%), Postives = 98/172 (56.98%), Query Frame = 1
Query:  139 RNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGT-----LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            +N    +++LDGWG  +  ++N I  A TP  D+  K       L+   G AVGLP E  MGNSEVGH  LGAGR+  Q    +   +  G+ +++   N +  + +  +     +H++GLLSDGGVHS +  ++  +K A +RGAK + +HI TDGRD    S++ ++E +
Sbjct:    8 KNRPTGLIILDGWGHREATQHNAIAQAHTPNWDNLLKDYHHT--LINTSGLAVGLP-EGQMGNSEVGHMNLGAGRVVYQELTRIQKDIDDGRFFEN---NALVKAIDAASNRDHKVHILGLLSDGGVHSHISHIKASIKMAHDRGAK-VYVHIFTDGRDTAPQSALQYIEEL 172          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_MYXXD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Myxococcus xanthus (strain DK 1622) GN=gpmI PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.630e-24
Identity = 67/165 (40.61%), Postives = 93/165 (56.36%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            V + +LDGWG  +    N I +A TP +D  K ++P  +  ++  G AVGLP E  MGNSEVGH  +GAGRI  Q    ++ A  SG++ Q+          +     LHL+GL+S GGVHS +D L  LLK A ER    + +H   DGRD    S++G+VE +
Sbjct:    7 VLLCILDGWGIRQERDNNAIVLAGTPHLD--KLASPYPFTELQTAGLAVGLP-EGQMGNSEVGHTNIGAGRIVYQDLVRINRAAESGELAQNPVLRAALDGVKADGKALHLLGLVSPGGVHSSMDHLFALLKAAKERNVAHVYVHAFLDGRDTPPQSALGYVEEL 168          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_PSEMY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas mendocina (strain ymp) GN=gpmI PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.353e-24
Identity = 63/165 (38.18%), Postives = 92/165 (55.76%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            + +++LDG+G     +YN IH A TP  D  + + P    L+   G  VGLP +  MGNSEVGH  LGAGR+  Q    V  A+  G+ + +   N  +  +   G  +H++GLLSDGGVHS  D +  + + A+ RGA++I LH   DGRD    S+   +E +
Sbjct:    8 LVLIILDGFGHSDKPEYNAIHAASTPVYDRLRATYPHG--LISGSGMDVGLP-DGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFDNAAINQAVDKAVAAGKAVHILGLLSDGGVHSHQDHIVAMAELAARRGAEKIYLHAFLDGRDTPPKSAQPSIELL 169          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_METMA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methanosarcina mazei GN=gpmI PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.353e-24
Identity = 60/165 (36.36%), Postives = 99/165 (60.00%), Query Frame = 1
Query:  157 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            +++LDGWG  +  + N I  A TP +D  +K  P  +  +   G AVGLP +  MGNSEVGH  +GAGR+  Q    +++++ +G  +++    +  + +K      +LHL+GL+S GGVHS +  L  L+K A E+G K++ +H+  DGRDV   +++G V+ +
Sbjct:   16 LMILDGWGYREEKEGNAILAASTPHLDRLQKERPSCF--LETSGEAVGLP-QGQMGNSEVGHLNIGAGRVVYQDLTKINVSIRNGDFFENPVLLDAISNVK--LNNSSLHLMGLVSYGGVHSHMTHLYALIKLAQEKGLKKVYIHVFLDGRDVPPKAALGDVKEL 175          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_COXBU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Coxiella burnetii GN=gpmI PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.353e-24
Identity = 66/165 (40.00%), Postives = 95/165 (57.58%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            + +++LDG+GE     +N I  A+TPT+D   +  P    L+ A G AVGLP +  MGNSEVGH  +G GR   Q    +D A+ASG+ Y++        K       +H++GLLS GGVHSR +Q+  L++ A   G K+I LH + DGRD    S++  +E I
Sbjct:   12 MVLIILDGFGESDETTHNAIKEANTPTLDKLFRHYPHT--LLEASGRAVGLP-DGQMGNSEVGHLHIGGGRKVPQDLTRIDAAIASGEFYENPALIEALEKAKALNKAVHILGLLSPGGVHSRDNQIAALVELAHRCGIKKIYLHAILDGRDTPPKSALLSIEKI 173          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_COXBR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=gpmI PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.353e-24
Identity = 66/165 (40.00%), Postives = 95/165 (57.58%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            + +++LDG+GE     +N I  A+TPT+D   +  P    L+ A G AVGLP +  MGNSEVGH  +G GR   Q    +D A+ASG+ Y++        K       +H++GLLS GGVHSR +Q+  L++ A   G K+I LH + DGRD    S++  +E I
Sbjct:   12 MVLIILDGFGESDETTHNAIKEANTPTLDKLFRHYPHT--LLEASGRAVGLP-DGQMGNSEVGHLHIGGGRKVPQDLTRIDAAIASGEFYENPALIEALEKAKALNKAVHILGLLSPGGVHSRDNQIAALVELAHHCGIKKIYLHAILDGRDTPPKSALLSIEKI 173          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_COXBN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=gpmI PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.353e-24
Identity = 66/165 (40.00%), Postives = 95/165 (57.58%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            + +++LDG+GE     +N I  A+TPT+D   +  P    L+ A G AVGLP +  MGNSEVGH  +G GR   Q    +D A+ASG+ Y++        K       +H++GLLS GGVHSR +Q+  L++ A   G K+I LH + DGRD    S++  +E I
Sbjct:   12 MVLIILDGFGESDETTHNAIKEANTPTLDKLFRHYPHT--LLEASGRAVGLP-DGQMGNSEVGHLHIGGGRKVPQDLTRIDAAIASGEFYENPALIEALEKAKALNKAVHILGLLSPGGVHSRDNQIAALVELAHRCGIKKIYLHAILDGRDTPPKSALLSIEKI 173          
The following BLAST results are available for this feature:
BLAST of FC930452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_BACME1.935e-2441.822,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FLAPJ4.311e-2440.592,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CYAP74.311e-2443.032,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_THICR5.630e-2436.632,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYXXD5.630e-2440.612,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEMY7.353e-2438.182,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_METMA7.353e-2436.362,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_COXBU7.353e-2440.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_COXBR7.353e-2440.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_COXBN7.353e-2440.002,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34007G01EF PostHarvC1 Citrus clementina cDNA clone C34007G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930452 ID=FC930452; Name=FC930452; organism=Citrus clementina; type=EST; length=639bp
GGTCCTGGTATTCTCTCTCTGTGTATATCACTTGTTTGTTTGTTAGCTTT
CTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGA
TGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATT
GTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTA
TAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGT
CTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGG
CTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACT
CGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTC
TGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCG
TCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGG
AGTACACTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGTG
AGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGAT
GTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATT
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