FC930452

Overview
NameFC930452
Unique NameFC930452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930452_ssr32 microsatellite FC930452_ssr32:32..43. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15077 contig Ccv1_Contig15077:1..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_TRIEI (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Trichodesmium erythraeum (strain IMS101) GN=gpmI PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.604e-24
Identity = 68/166 (40.96%), Postives = 94/166 (56.63%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKY-NCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSF--ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            V +++LDGWG Y+ +KY N I V  TP +DS  ++ P    L++A G AVGLP E  MGNSEVGH  +GAGR+  Q    +  A+  G I Q++    I          LHL+GL S GGVHS ++ L  LL  A  +G   + +H +TDGRD    S +  ++ I
Sbjct:    9 VVLIILDGWG-YREEKYGNAIAVGKTPNIDSLWQAYPRT--LIQASGKAVGLP-EGQMGNSEVGHLNIGAGRVVPQELVRISDAIEDGLIVQNQAIKKICQDVIERNSKLHLVGLCSSGGVHSHVNHLLGLLDVAKAKGISDVCVHAITDGRDTNPKSGLHVLKQI 170          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_SACD2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=gpmI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.254e-23
Identity = 61/152 (40.13%), Postives = 89/152 (58.55%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            +A+++LDG+G  + DKYN I+ A  PT        P+    +   G AVGLP E  MGNSEVGH  LGAGR+  Q    ++ A+A G  Y +  +       ++    +H+IGLLSDGGVHS  D +  +++ A +RGA+++ +H   DGRD
Sbjct:    8 LALIILDGFGYSESDKYNAINAAKAPTWRKIWAENPKT--TIATSGMAVGLP-EGQMGNSEVGHMTLGAGRVVYQNFTRINKAIADGDFYTNPVYTKAVDDAQSQGKAVHVIGLLSDGGVHSHEDHMIAMMELAVKRGAEKVYMHAFLDGRD 156          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_CYAP4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=gpmI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.254e-23
Identity = 70/165 (42.42%), Postives = 89/165 (53.94%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSF-ETGT-LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            V +V+LDGWG  +    N I  A TP MDS  ++ P    LV   G AVGLP +  MGNSEVGH  LGAGRI  Q    +  A   G +  +     +     + GT LHL+GL SDGGVHS LD L  LL  A   G  ++ +H +TDGRD L      F++ +
Sbjct:    9 VVLVILDGWGYREELVGNAIAAAHTPVMDSLWQAYPHT--LVYTSGKAVGLP-KGQMGNSEVGHLNLGAGRIVPQELVRISDAAEDGSLAANPALVQVYEGVKQRGTKLHLVGLCSDGGVHSHLDHLLALLDMAKSLGVTQVCVHAITDGRDTLPTEGKTFIQRL 170          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_CHLSY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=gpmI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.254e-23
Identity = 63/173 (36.42%), Postives = 97/173 (56.07%), Query Frame = 1
Query:  133 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            ++R   V ++++DGWG   P   N   +ADTP +D++  + P  +  + A G  VGLP E  +GNSEVGH  +GAG +  Q    +  A+A G  + +    +   ++K       LHL+GL   GGVH+  D L  LL+ A     +R+ LH+  DGRDVL  S++GF++T+
Sbjct:    1 MTRPRPVVLIIMDGWGIAPPGPGNAADLADTPHVDAWMANCP--FTTLGASGLDVGLP-EGQIGNSEVGHLNIGAGFVVYQELTRISKAIADGDFFTNPVLLQAIEHVKQ--RNSALHLMGLFGPGGVHAHEDHLHALLELAHRHHLQRVYLHLFLDGRDVLPRSALGFLDTL 168          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_CHLAA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=gpmI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.254e-23
Identity = 63/173 (36.42%), Postives = 97/173 (56.07%), Query Frame = 1
Query:  133 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            ++R   V ++++DGWG   P   N   +ADTP +D++  + P  +  + A G  VGLP E  +GNSEVGH  +GAG +  Q    +  A+A G  + +    +   ++K       LHL+GL   GGVH+  D L  LL+ A     +R+ LH+  DGRDVL  S++GF++T+
Sbjct:    1 MTRPRPVVLIIMDGWGIAPPGPGNAADLADTPHVDAWMANCP--FTTLGASGLDVGLP-EGQIGNSEVGHLNIGAGFVVYQELTRISKAIADGDFFTNPVLLQAIEHVKQ--RNSALHLMGLFGPGGVHAHEDHLHALLELAHRHHLQRVYLHLFLDGRDVLPRSALGFLDTL 168          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_PHOPR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Photobacterium profundum GN=gpmI PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.139e-23
Identity = 65/169 (38.46%), Postives = 97/169 (57.40%), Query Frame = 1
Query:  133 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 633
            +S    +A+V+LDGWG  + +  N I  A+TP MDS    A E   L+ A G  VGLP +  MGNSEVGH  +GAGR+  Q    +  ++A G  +++E     +  +   G  +H++GL+S GGVHS  D +   ++ A++RGA++I LH   DGRD    S+   +E
Sbjct:    1 MSAKKPLALVILDGWGYREDNSDNAIANANTPVMDSL--IANEANTLISASGFDVGLP-DGQMGNSEVGHTNIGAGRVVYQDLTRITKSIADGDFFENEALTTAMDKAINAGKAVHIMGLMSPGGVHSHEDHIAAAIEMAAKRGAEKIYLHCFLDGRDTPPRSAQNSLE 166          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_MICAN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Microcystis aeruginosa (strain NIES-843) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.139e-23
Identity = 72/161 (44.72%), Postives = 93/161 (57.76%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKY-NCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD--VLDG 612
            V +V+LDGWG Y+P +  N I +A TP MDS  +  P    L+R     VGLP E  MGNSEVGH  +GAGR+  Q    +  A+  G I Q++        I+P  +   LHLIGL S+GGVHS LD L  LL  A  +G   + +H++TDGRD  V DG
Sbjct:    9 VVLVILDGWG-YRPQRSDNAIAMAKTPIMDSLWEVYPHT--LIRTSAKDVGLP-EGQMGNSEVGHLNIGAGRVVPQELVRISDAIEDGSIQQNQALLKLCAEIRP--KKSKLHLIGLCSEGGVHSHLDHLLGLLDLAKVQGISDVCIHVITDGRDTNVTDG 163          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_SYNP6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.794e-23
Identity = 67/165 (40.61%), Postives = 89/165 (53.94%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            V +V+LDGWG     + N I  A+TP MD+  ++ P    L+   G  VGLP +  MGNSEVGH  LGAGRI  Q    +  A+  G I ++        +       LHLIGL SDGGVH+ LD L  LLK A+ +G + + +H +TDGRD      V  +  I
Sbjct:    9 VVLVILDGWGYRNATEGNAIRTAETPIMDALWEAYPST--LIHTSGKDVGLP-DGQMGNSEVGHLNLGAGRIVPQELVRITDAVEDGSILENPALLQACSAVRQHGSKLHLIGLCSDGGVHAHLDHLGGLLKLAAAQGIQDVYIHAITDGRDTNPTEGVNCITKI 170          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_SYNE7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus elongatus (strain PCC 7942) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.794e-23
Identity = 67/165 (40.61%), Postives = 89/165 (53.94%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            V +V+LDGWG     + N I  A+TP MD+  ++ P    L+   G  VGLP +  MGNSEVGH  LGAGRI  Q    +  A+  G I ++        +       LHLIGL SDGGVH+ LD L  LLK A+ +G + + +H +TDGRD      V  +  I
Sbjct:    9 VVLVILDGWGYRNATEGNAIRTAETPIMDALWEAYPST--LIHTSGKDVGLP-DGQMGNSEVGHLNLGAGRIVPQELVRITDAVEDGSILENPALLQACSAVRQHGSKLHLIGLCSDGGVHAHLDHLGGLLKLAAAQGIQDVYIHAITDGRDTNPTEGVNCITKI 170          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_PORPU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Porphyra purpurea GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.794e-23
Identity = 66/178 (37.08%), Postives = 95/178 (53.37%), Query Frame = 1
Query:  112 KLKEHPQLSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI-KPSFETGT-LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            K K HP       + + +LDGWG     + N I +A TPT+DS  ++ P    L+ A G  VGLP +  MGNSEVGH  +G GR+  Q    +  ++ +   + +   N     +  T T LHLIGL S+GGVHS LD L  L+  A  +    + +H++TDGRD    S+  F++ I
Sbjct:    3 KKKVHP-------IVLAILDGWGHSNSHQGNAIKIAKTPTIDSLLETYPNT--LLVASGEEVGLP-KGQMGNSEVGHTTIGGGRVVEQELVKIGNSIENKSFFNNVQLNCACDHAISTQTSLHLIGLCSNGGVHSHLDHLLALIHVAESKKVPNLYIHLITDGRDTNSNSAKSFIKLI 170          
The following BLAST results are available for this feature:
BLAST of FC930452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_TRIEI9.604e-2440.962,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SACD21.254e-2340.132,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CYAP41.254e-2342.422,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHLSY1.254e-2336.422,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHLAA1.254e-2336.422,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PHOPR2.139e-2338.462,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MICAN2.139e-2344.722,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNP62.794e-2340.612,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNE72.794e-2340.612,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PORPU2.794e-2337.082,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34007G01EF PostHarvC1 Citrus clementina cDNA clone C34007G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930452 ID=FC930452; Name=FC930452; organism=Citrus clementina; type=EST; length=639bp
GGTCCTGGTATTCTCTCTCTGTGTATATCACTTGTTTGTTTGTTAGCTTT
CTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGA
TGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATT
GTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTA
TAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGT
CTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGG
CTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACT
CGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTC
TGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCG
TCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGG
AGTACACTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGTG
AGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGAT
GTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATT
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