FC930452

Overview
NameFC930452
Unique NameFC930452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_BACST (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus stearothermophilus GN=gpmI PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.062e-22
Identity = 66/156 (42.31%), Postives = 92/156 (58.97%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGT-LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDV 603
            VA+++LDG+        N +  A+ P  D +    P     ++A G AVGLP E  MGNSEVGH  +GAGRI  Q    +++A+  G+  ++E F    N++K   + GT LHL GLLSDGGVHS +  L  LL+ A++ G KR+ +H   DGRDV
Sbjct:    6 VALIILDGFALRDETYGNAVAQANKPNFDRYWNEYPHT--TLKACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRINIAIREGEFDRNETFLAAMNHVK---QHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDV 155          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_SYNP2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.387e-22
Identity = 66/167 (39.52%), Postives = 90/167 (53.89%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGT----LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            V +V+LDGWG  +    N I  A+TP +D+F  + P    L+   G  VGLP +  MGNSEVGH  LGAGR+  Q    +  A+  G   +++    +K   ET      LHLIGL SDGGVHS L+ L  LL  A   G   + +H +TDGRD      + +++ I
Sbjct:    9 VVLVILDGWGYRQEANANAIAAANTPNVDAFFATYPST--LIHTSGKRVGLP-DGQMGNSEVGHLNLGAGRVVPQELVRISDAIEDGSFLRNDVL--VKVCRETRQAGKKLHLIGLCSDGGVHSHLNHLLGLLDLAKVNGIADVHIHAITDGRDTNTTEGINYLQQI 170          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_SULDN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.387e-22
Identity = 60/161 (37.27%), Postives = 92/161 (57.14%), Query Frame = 1
Query:  157 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            +V+ DG G     +YN  + A  PT D    + P  +  +  HG +VGLP E  MGNSEVGH ++G+GR+  Q    + L+L+  +   +E F  +    ++  LHLIGL+SDGGVHS +D    +   A++ G K + LH++TDGRDV   S+  ++  +
Sbjct:    7 LVITDGIGYSSGMEYNAFYNAQKPTYDKLFSNTPHSF--IETHGLSVGLP-EGQMGNSEVGHMSMGSGRVLYQDLVKISLSLSENRFRDNEAFRELLA--KSSRLHLIGLMSDGGVHSHIDHFMGIADIAAKEG-KEVFLHLITDGRDVSPTSAKKYLAQV 161          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_SILPO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Silicibacter pomeroyi GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.387e-22
Identity = 62/162 (38.27%), Postives = 87/162 (53.70%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFV 630
            V + +LDGWG       N  ++A TPT D+     P   RL+  HG  VGLP+   MGNSEVGH  +GAGR+ A     +DLA+  G  + +        +     GT HL+GL+SDGGVH  L+ +    +  +  G   + +H +TDGRDV   S+ GF+
Sbjct:    7 VVLCILDGWGLSDDKTANAPYLAKTPTFDAIMTKGPHA-RLI-THGPDVGLPS-GQMGNSEVGHTNIGAGRVVAMDLGQIDLAIEDGSFFDNAALRDFIARTRAAGGTAHLMGLVSDGGVHGHLNHIIAAAQAITNAGVP-VVMHAITDGRDVAPKSAYGFM 164          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_CLOTH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.811e-22
Identity = 63/169 (37.28%), Postives = 92/169 (54.44%), Query Frame = 1
Query:  139 RNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFE--TGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            ++ +V +++LDG+G     + N I  A+ P +D F +  P    +VR  G  VGLP +  MGNSEVGH  +GAGRI  Q    +  ++  G  ++ + F     +       LHL GLLSDGGVHS    L  LL+ A  +  K + +H   DGRDV   S++G+VE +
Sbjct:    2 KDKLVMLIILDGYGINPRKEGNAIEAANKPNIDRFMREYPNT--IVRTSGMDVGLP-DGQMGNSEVGHTNIGAGRIVYQELTRITKSIQDGDFFEKKEFLDAAENCRKHNSKLHLFGLLSDGGVHSHNTHLYGLLEFAKRQNLKDVYVHCFFDGRDVPPDSAMGYVEEL 167          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_CLOTE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium tetani GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.811e-22
Identity = 60/165 (36.36%), Postives = 92/165 (55.76%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            V +++LDG+G    +  N + +A+ P  D   +  P     ++A G  VGLP E  MGNSEVGH  +G+GR+  Q    +   +  G  +++   NY   +      +LHL+GLLSDGGVHS +D L+ +LK A ++G  R+ +H   DGRDV   S+  ++  I
Sbjct:    6 VMLMILDGFGITNHEDGNAVKMANKPNFDKLLREYPHTQ--LKASGLNVGLP-EGQMGNSEVGHLNIGSGRVIYQELTRITKDINDGVFFENTEINYAIDEAIKNNSSLHLLGLLSDGGVHSHIDHLKAILKLAKDKGLNRVYVHAFLDGRDVPPSSAKEYIINI 167          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_CHRSD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.811e-22
Identity = 65/163 (39.88%), Postives = 91/163 (55.83%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 633
            VA+++LDG+G+    +YN ++ A TP MD+ K+  P    L+   G  VGLP +  MGNSEVGH  LGAGRI  Q    +  A+   ++  +      I  +   G  +HL+GLLS GGVHS  D +  +   A+ERGAK + LH   DGRD    S+   +E
Sbjct:   12 VALLILDGYGQNDDTEYNAVYSARTPVMDALKQRYPST--LLHTDGKYVGLP-DGQMGNSEVGHMNLGAGRIVYQDFTRITKAIEDNELASNPVLTAPIDAAVAAGRAVHLLGLLSPGGVHSHEDHILAVAALAAERGAKHVYLHAFLDGRDTAPKSARASLE 171          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_RHOS5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.365e-22
Identity = 62/165 (37.58%), Postives = 92/165 (55.76%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYI-KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            V + +LDGWG     + N + +A+TPT D    + P    +   HG  VGLP    MGNSEVGH  +GAGR+ A     +DLA+  G   ++    ++I K   + GT HL+G++SDGGVH  +  L   ++  +  G   + +H +TDGRDV   S+ GFV+ +
Sbjct:    7 VVLCILDGWGLRAEREANAVALANTPTFDRLMATCPNATLIT--HGPDVGLP-RGQMGNSEVGHTNIGAGRVVAMDLGAIDLAIEEGTFARNPALCDFIAKVKAKGGTAHLMGVVSDGGVHGHIQHLIAAVEVIAASGVP-VVIHAITDGRDVAPTSAGGFVQQL 167          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_PSEPG (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas putida (strain GB-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.365e-22
Identity = 61/165 (36.97%), Postives = 93/165 (56.36%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            + +++LDG+G  +  ++N I  A+TP  D  + + P    L+   G  VGLP +  MGNSEVGH  LGAGR+  Q    V  A+  G+ +++        K +     +H++GLLSDGGVHS  D L  + + A++RGA++I LH   DGRD    S+   +E +
Sbjct:    8 LVLIILDGFGHSEVPEHNAIFAANTPVYDRLRATLPHG--LISGSGMDVGLP-DGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFKNPVLTGAVDKAASAGKAVHILGLLSDGGVHSHQDHLVAMAELAAQRGAEKIYLHAFLDGRDTPPRSAQSSIELL 169          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_COLP3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.365e-22
Identity = 60/169 (35.50%), Postives = 92/169 (54.44%), Query Frame = 1
Query:  133 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGT--LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 633
            ++      +++LDGWG  +    N IH A+TP +D+ K   P    L+   G AVGLP E  MGNSEVGH  LGAGR+  Q    +  A++ G   ++    +   +  +    +H+ GLLS GGVHS  + +  +++ A +RGA+++ LH   DGRD    S+   +E
Sbjct:    1 MANKKSTVLMILDGWGYREETSSNAIHQANTPVLDNLKAKYPNM--LIDTSGMAVGLP-EGQMGNSEVGHVNLGAGRVVYQDFTRITKAISDGDFIENPTLCHAVDTATSNNKAVHIFGLLSPGGVHSHEEHIFAMMELAKKRGAQKVYLHAFLDGRDTPPRSAQASLE 166          
The following BLAST results are available for this feature:
BLAST of FC930452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_BACST1.062e-2242.312,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNP21.387e-2239.522,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SULDN1.387e-2237.272,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SILPO1.387e-2238.272,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOTH1.811e-2237.282,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOTE1.811e-2236.362,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHRSD1.811e-2239.882,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOS52.365e-2237.582,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEPG2.365e-2236.972,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_COLP32.365e-2235.502,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34007G01EF PostHarvC1 Citrus clementina cDNA clone C34007G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930452 ID=FC930452; Name=FC930452; organism=Citrus clementina; type=EST; length=639bp
GGTCCTGGTATTCTCTCTCTGTGTATATCACTTGTTTGTTTGTTAGCTTT
CTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGA
TGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATT
GTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTA
TAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGT
CTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGG
CTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACT
CGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTC
TGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCG
TCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGG
AGTACACTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGTG
AGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGAT
GTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATT
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