FC930452

Overview
NameFC930452
Unique NameFC930452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930452_ssr32 microsatellite FC930452_ssr32:32..43. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15077 contig Ccv1_Contig15077:1..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_VIBCM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.089e-22
Identity = 64/158 (40.51%), Postives = 90/158 (56.96%), Query Frame = 1
Query:  133 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            +S    +A+V+LDGWG  + +  N I+ A TP MDS   + P    L+ A G  VGLP +  MGNSEVGH  +GAGRI  Q    +  A+  G+   ++     I  +   G  +HL+GL+S GGVHS  D +   ++ A+ RGA++I LH   DGRD
Sbjct:    1 MSAKKPMALVILDGWGYREDNANNAINNARTPVMDSLMANNPHT--LISASGMDVGLP-DGQMGNSEVGHTNIGAGRIVYQDLTRITKAIMDGEFQHNKVLVAAIDKAVAAGKAVHLMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRD 155          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_VIBCH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio cholerae GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.089e-22
Identity = 64/158 (40.51%), Postives = 90/158 (56.96%), Query Frame = 1
Query:  133 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            +S    +A+V+LDGWG  + +  N I+ A TP MDS   + P    L+ A G  VGLP +  MGNSEVGH  +GAGRI  Q    +  A+  G+   ++     I  +   G  +HL+GL+S GGVHS  D +   ++ A+ RGA++I LH   DGRD
Sbjct:    1 MSAKKPMALVILDGWGYREDNANNAINNARTPVMDSLMANNPHT--LISASGMDVGLP-DGQMGNSEVGHTNIGAGRIVYQDLTRITKAIMDGEFQHNKVLVAAIDKAVAAGKAVHLMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRD 155          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_VIBC3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.089e-22
Identity = 64/158 (40.51%), Postives = 90/158 (56.96%), Query Frame = 1
Query:  133 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            +S    +A+V+LDGWG  + +  N I+ A TP MDS   + P    L+ A G  VGLP +  MGNSEVGH  +GAGRI  Q    +  A+  G+   ++     I  +   G  +HL+GL+S GGVHS  D +   ++ A+ RGA++I LH   DGRD
Sbjct:    1 MSAKKPMALVILDGWGYREDNANNAINNARTPVMDSLMANNPHT--LISASGMDVGLP-DGQMGNSEVGHTNIGAGRIVYQDLTRITKAIMDGEFQHNKVLVAAIDKAVAAGKAVHLMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRD 155          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_SYNJA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. (strain JA-3-3Ab) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.089e-22
Identity = 68/163 (41.72%), Postives = 95/163 (58.28%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVL--DGSSV 621
            V +V+LDGWG  +  + N +  A TP +DS   + P    L++A G AVGLP+   MGNSEVGH  LGAGR+  Q    +  A+ +G ++ +    E  + +K   + G  H IGL S+GGVHS +D L  LLK A++ G     +H +TDGRD L  DG+ V
Sbjct:    9 VVLVILDGWGYREAPEGNAVLAARTPVVDSLWATYPHT--LLQASGRAVGLPS-GQMGNSEVGHLTLGAGRVVPQELVRISDAIETGSLFHEPLLVEVCHRLKE--QGGRFHFIGLCSEGGVHSHIDHLYGLLKLAAQAGIPAY-VHAITDGRDTLPRDGARV 165          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_SHELP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.089e-22
Identity = 61/168 (36.31%), Postives = 91/168 (54.17%), Query Frame = 1
Query:  136 SRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF--NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 633
            +R   +A+++LDGWG  +    N ++ A+TP +D   K  P    L+   G  VGLP +  MGNSEVGH  +G+GR+  Q    +  ++  G+   +  F     K     G +H++GLLS GGVHS    +Q + K A  RGAK++ LH   DGRD    S+ G ++
Sbjct:    3 TRKRPLALLILDGWGYRENTHMNAVYHANTPVLDRLNKEYPNS--LISGSGLDVGLP-DGQMGNSEVGHINIGSGRVVYQELTRIGKSIEDGEFDSNPAFVDAVDKAIAADGAVHIMGLLSPGGVHSHESHIQAMCKMAVARGAKQVYLHAFLDGRDTPPRSAKGSLQ 167          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_NATPD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.089e-22
Identity = 63/164 (38.41%), Postives = 89/164 (54.27%), Query Frame = 1
Query:  154 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            A+V+LDGWG    D+ + +  ADTP  D+  +        +  HG +VGLP +  MGNSEVGH  +GAGR+  Q +  V   + +G    +E     +       G +H +GL+SDGGVHS    L  L+  A+ERG + +  H  TDGRD    S VGF+E +
Sbjct:    4 ALVILDGWGLGDGDETDAVAAADTPAFDALAERGATGQ--LETHGRSVGLP-DGQMGNSEVGHLNIGAGRVVKQDSTRVTDDIDAGVFADNEALARAFDHADDHDGRVHFMGLVSDGGVHSYQSHLHALVDLAAERGVEAV-THAFTDGRDTAPKSGVGFIEDL 163          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_FLAJ1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.089e-22
Identity = 64/170 (37.65%), Postives = 95/170 (55.88%), Query Frame = 1
Query:  142 NNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDE----GFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            N  V +++LDGWG+    K + I  A+ P ++S  K+ P     +R  G  VGLP E  MGNSEVGH  LGAGRI  Q    ++LA+A   + +++     F Y K + +   +H +GL+SDGGVHS    L+ L+  + E G  ++ +H  TDGRDV   S   ++  +
Sbjct:    2 NKKVILMILDGWGKSPDPKVSAIDNANVPFINSLYKNYPSAQ--LRTDGLNVGLP-EGQMGNSEVGHMNLGAGRIVYQDLAKINLAVAHKTLAKEQVLIDAFTYAKENNKK--VHFLGLVSDGGVHSHTSHLRGLIDASQEYGLDQVYVHAFTDGRDVDPKSGAKYIHDL 166          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_ANAVT (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.089e-22
Identity = 63/165 (38.18%), Postives = 85/165 (51.52%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            V +V+LDGWG  +  + N I  A TP M+S   + P    L+   G AVGLP E  MGNSEVGH  +GAGR+  Q    +  A+  G I  +     I        G LHL+GL S+GGVHS +  L  LL  A E+    + +H +TDGRD      +  +  +
Sbjct:    9 VVLVILDGWGYCEETRGNAIAAAKTPVMESLWTAYPHT--LIHTSGKAVGLP-EGQMGNSEVGHLNIGAGRVVPQELVRISDAVEDGSILSNSALVKICQEVRNRNGKLHLVGLCSEGGVHSHITHLFGLLDLAKEQRISEVCIHAITDGRDTAPTDGINAISAL 170          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_ANASP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Anabaena sp. (strain PCC 7120) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.089e-22
Identity = 63/165 (38.18%), Postives = 85/165 (51.52%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            V +V+LDGWG  +  + N I  A TP M+S   + P    L+   G AVGLP E  MGNSEVGH  +GAGR+  Q    +  A+  G I  +     I        G LHL+GL S+GGVHS +  L  LL  A E+    + +H +TDGRD      +  +  +
Sbjct:    9 VVLVILDGWGYCEETRGNAIAAAKTPVMESLWTAYPHT--LIHTSGKAVGLP-EGQMGNSEVGHLNIGAGRVVPQELVRISDAVEDGSILSNSALVKICQEVRNRNGKLHLVGLCSEGGVHSHITHLFGLLDLAKEQRISEVCIHAITDGRDTAPTDGINAISAL 170          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_MYCMS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma mycoides subsp. mycoides SC GN=gpmI PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.035e-22
Identity = 62/167 (37.13%), Postives = 92/167 (55.09%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEG----FNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            V + +LDGWG  +PDK N +  A+   ++  KK+ P  W    A G  VGLP E+ MGNSEVGH  LGAGRI  +    ++    +  I +++     F Y+K +     LHL+GL S+GGVHS  D +  + K A + G   I+  ++TDGRD     +  F++ +
Sbjct:    7 VLLAILDGWGISEPDKGNAVDNANMVFVEYLKKTYP--WLKAHASGKWVGLP-ENQMGNSEVGHIHLGAGRINLESLAKLNHETKTNNIAKNDEIVKTFEYVKKN--NSALHLMGLFSNGGVHSHFDHMIAIYKAAIDYGITNIKFDLITDGRDTKPKLAYDFIKDL 168          
The following BLAST results are available for this feature:
BLAST of FC930452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_VIBCM3.089e-2240.512,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBCH3.089e-2240.512,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBC33.089e-2240.512,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNJA3.089e-2241.722,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHELP3.089e-2236.312,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_NATPD3.089e-2238.412,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FLAJ13.089e-2237.652,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ANAVT3.089e-2238.182,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ANASP3.089e-2238.182,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCMS4.035e-2237.132,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34007G01EF PostHarvC1 Citrus clementina cDNA clone C34007G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930452 ID=FC930452; Name=FC930452; organism=Citrus clementina; type=EST; length=639bp
GGTCCTGGTATTCTCTCTCTGTGTATATCACTTGTTTGTTTGTTAGCTTT
CTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGA
TGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATT
GTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTA
TAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGT
CTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGG
CTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACT
CGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTC
TGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCG
TCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGG
AGTACACTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGTG
AGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGAT
GTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATT
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