FC930453

Overview
NameFC930453
Unique NameFC930453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: HS104_YEAST (Heat shock protein 104 OS=Saccharomyces cerevisiae GN=HSP104 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.165e-23
Identity = 66/194 (34.02%), Postives = 98/194 (50.52%), Query Frame = 3
Query:  141 KFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNA--GGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            +FT +    + +A +LA+   H Q  P+H+  A +  P       + N    G       + V N+ + ++P Q PAP EI  S  L KV++ A   QK   D+ +A D ++  L  DS I  +FKEA V +  +K +  +LRG        A  +T  + L  Y  D+ EQA  GKLDPVIGR+EE R  +R+
Sbjct:    6 QFTERALTILTLAQKLASDHQHPQLQPIHILAAFIETPEDGSVPYLQNLIEKGRYDYDLFKKVVNRNLVRIPQQQPAPAEITPSYALGKVLQDAAKIQKQQKDSFIAQDHILFALFNDSSIQQIFKEAQVDIEAIKQQALELRGNTRIDSRGADTNTPLEYLSKYAIDMTEQARQGKLDPVIGREEEIRSTIRV 199          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_RICFE (Chaperone protein clpB OS=Rickettsia felis GN=clpB PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 64/198 (32.32%), Postives = 108/198 (54.55%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPS-QTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQI-GDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVE--QAGKLDPVIGRDEENRKGVRI 710
            MN DKFT      IA +  +A    H Q  PLHL  +LLS+ +GI    INN GG       +      + K+P  Q     ++ +S   +KV+ +A +  K  GD+ + ++++   L   + I G +    G+   ++ + +  L+ ++G+K ++ S + ++ ALK YGRD+ E  ++GKLDP+IGRDEE R+ V++
Sbjct:    1 MNIDKFTAHAKSVIASSQSIAAKNDHQQILPLHLLSSLLSEETGIIQTLINNTGGN--INLLKDQVQLELNKIPKVQVEGGGQVYSSAEALKVLEKASSIAKDSGDSFVTIERIFEALTYGNTIAGKILTNNGINSKKLAAAI--LQFRKGKKADTESAENSYDALKKYGRDVTELAESGKLDPIIGRDEEIRRTVQV 194          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_RICTY (Chaperone protein clpB OS=Rickettsia typhi GN=clpB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.780e-23
Identity = 68/198 (34.34%), Postives = 106/198 (53.54%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPS-QTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQI-GDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            MN DKFT      IA    LA    H Q  PLHL  +LLS+ +GI    INN GG       +      + K+P  Q     +I  S   +KV+ ++++  K  GD+ + ++++   L  D+ I G +    G+   ++ + +  LR  +G+K ++ S + ++ ALK YGRD+ E A  GKLDP+IGRDEE R+ V++
Sbjct:    1 MNIDKFTAHAKSVIANHQSLAIKNDHQQILPLHLLSSLLSEETGIIQALINNIGGN--IHLLKDQVQLELNKIPKIQVDGGGQIYYSAEDLKVLEKSRSIAKDSGDSFVTIERIFEALTYDNTIAGKILTNNGINSKKLAAAILHLR--KGKKADTESAENSYDALKRYGRDVTELAKNGKLDPIIGRDEEIRRAVQV 194          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_CAUCR (Chaperone protein clpB OS=Caulobacter crescentus GN=clpB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.549e-23
Identity = 64/197 (32.49%), Postives = 103/197 (52.28%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLL-EDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            MN D ++ +  +A+  A  LA + GH QF P H+   LL +  G+    I +AGG       +      + K P    A  ++       +V   A+ + KA GD  +  ++L++ +  E  +   LFKEAGV+   +++    +R  +GR  +SA+ +  ++ALK Y RDL   A  GKLDPVIGRDEE R+ +++
Sbjct:    1 MNIDLYSDRAKQAVQSAQSLALARGHQQFAPEHILKVLLEEKDGLSRALIQSAGGR--PDQLDGGVETLLAKTPRVDGAGGQLYMKPDTARVFAEAEKSAKAAGDAFVTTERLLIAIAKEGGEAAKLFKEAGVSAQSLETAANAMR--KGRTADSANAEEGYEALKRYARDLTAAARDGKLDPVIGRDEEIRRTIQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: HSP98_NEUCR (Heat shock protein hsp98 OS=Neurospora crassa GN=hsp98 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23
Identity = 74/210 (35.24%), Postives = 111/210 (52.86%), Query Frame = 3
Query:  141 KFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLS---DPS------------GIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIGDLFKEAGVAVAR-VKSEVEKLRGKEGRKVESASGDT--TFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            +FT +  +A+  A  LA    H+Q  P+HLAVALL    DPS             +F Q I  A G+   Q  +    +A+ +LPSQ P PD +  + +   V+R+A   QK   DT++AVD LI  L E+  I +  KEA +   + V   ++ +RG   ++V+S + DT    + L  +  D+   A  GK+DPVIGR+EE R+ +RI
Sbjct:    6 EFTDRAKKALEDAMALAEQYAHSQLLPVHLAVALLDPLPDPSKDQQNAPAGATSSLFRQVIERAHGD--PQLFDRALKKALVRLPSQDPPPDHVSMAPSFHTVLRKANELQKTQKDTYIAVDHLITALAEEPSIMNALKEANIPKPKLVTDAIQAIRGT--KRVDSRNADTEEEHENLAKFTIDMTAMAREGKIDPVIGREEEIRRVIRI 211          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_RICPR (Chaperone protein clpB OS=Rickettsia prowazekii GN=clpB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23
Identity = 68/198 (34.34%), Postives = 104/198 (52.53%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPS-QTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQI-GDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            MN DKFT      IA    LA    H Q  PLHL  +LLS+ +GI    INN GG       +      + K+P  Q     +I  S   +KV+ ++ +  K  GD+ + ++++   L  D+ I G +    G+   ++ + +  LR  +G+K ++ S +  + ALK YGRD+ E A  GKLDP+IGRDEE R+ V++
Sbjct:    1 MNIDKFTAHAKSVIANHQSLAIKNDHQQILPLHLLSSLLSEETGIIQALINNIGGN--INLLKDQVQLELNKIPKIQVDGGGQIYYSAEDLKVLEKSSSIAKDSGDSFVTIERIFEALTYDNTIAGKILTNNGINSKKLATAILHLR--KGKKADTESAENNYDALKRYGRDVTELAENGKLDPIIGRDEEIRRAVQV 194          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_BORPE (Chaperone protein clpB OS=Bordetella pertussis GN=clpB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23
Identity = 69/197 (35.03%), Postives = 101/197 (51.27%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  DK T K  +A+A A  LA    H    P+H+  ALL DP    A  +  AG   A    +P  + A+K LP Q    D +     L  V+ R        GDT++A +  +L L +D    G + +EAG+    +++ ++ +RG  G  V  A G++  +AL  Y  DL E+A  GKLDPVIGRD+E R+ ++I
Sbjct:    1 MRFDKLTTKFQQALADAQSLAARNDHPYIEPVHVLAALLGDPDSGAASLLARAG--VAVNRVQPAIDSALKGLP-QVQGDDNVQVGRELQSVLVRTDKEAARRGDTYIASELFLLALADDKGDAGRILREAGLQKKALEAAIDAVRG--GENVSGAEGESNREALSKYTLDLTERARQGKLDPVIGRDDEIRRTIQI 192          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_BORPA (Chaperone protein clpB OS=Bordetella parapertussis GN=clpB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23
Identity = 69/197 (35.03%), Postives = 101/197 (51.27%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  DK T K  +A+A A  LA    H    P+H+  ALL DP    A  +  AG   A    +P  + A+K LP Q    D +     L  V+ R        GDT++A +  +L L +D    G + +EAG+    +++ ++ +RG  G  V  A G++  +AL  Y  DL E+A  GKLDPVIGRD+E R+ ++I
Sbjct:    1 MRFDKLTTKFQQALADAQSLAARNDHPYIEPVHVLAALLGDPDSGAASLLARAG--VAVNRVQPAIDSALKGLP-QVQGEDNVQVGRELQSVLVRTDKEAARRGDTYIASELFLLALADDKGDAGRILREAGLQKKALEAAIDAVRG--GENVSGAEGESNREALSKYTLDLTERARQGKLDPVIGRDDEIRRTIQI 192          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_BORBR (Chaperone protein clpB OS=Bordetella bronchiseptica GN=clpB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23
Identity = 69/197 (35.03%), Postives = 101/197 (51.27%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  DK T K  +A+A A  LA    H    P+H+  ALL DP    A  +  AG   A    +P  + A+K LP Q    D +     L  V+ R        GDT++A +  +L L +D    G + +EAG+    +++ ++ +RG  G  V  A G++  +AL  Y  DL E+A  GKLDPVIGRD+E R+ ++I
Sbjct:    1 MRFDKLTTKFQQALADAQSLAARNDHPYIEPVHVLAALLGDPDSGAASLLARAG--VAVNRVQPAIDSALKGLP-QVQGEDNVQVGRELQSVLVRTDKEAARRGDTYIASELFLLALADDKGDAGRILREAGLQKKALEAAIDAVRG--GENVSGAEGESNREALSKYTLDLTERARQGKLDPVIGRDDEIRRTIQI 192          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_AGRT5 (Chaperone protein clpB OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpB PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.197e-22
Identity = 66/198 (33.33%), Postives = 103/198 (52.02%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIGD--LFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            MN DK++ +    +  A   A +  H QF+P H+   LL D  G+ A  I  AGG+  A+ A    + A+ KLP  +     +  +  L KV   A+   K  GD+ + V++L+  L  +S        K+AG     +   +  +R  +GR  +SA+ +  F ALK Y RDL E+A  G+LDPVIGRD+E R+ +++
Sbjct:    1 MNIDKYSERVRGFLQSAQTFALAENHQQFSPEHVLKVLLDDEQGMAASLIERAGGD--AKEARLANDAALAKLPKVSGGNGGLSLTAPLAKVFSTAEDLAKKAGDSFVTVERLLQALAIESSASTSASLKKAGATAQALNQVINDIR--KGRTADSANAEQGFDALKKYARDLTEEAREGRLDPVIGRDDEIRRTIQV 194          
The following BLAST results are available for this feature:
BLAST of FC930453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
HS104_YEAST1.165e-2334.02Heat shock protein 104 OS=Saccharomyces cerevisiae... [more]
CLPB_RICFE3.389e-2332.32Chaperone protein clpB OS=Rickettsia felis GN=clpB... [more]
CLPB_RICTY5.780e-2334.34Chaperone protein clpB OS=Rickettsia typhi GN=clpB... [more]
CLPB_CAUCR7.549e-2332.49Chaperone protein clpB OS=Caulobacter crescentus G... [more]
HSP98_NEUCR9.860e-2335.24Heat shock protein hsp98 OS=Neurospora crassa GN=h... [more]
CLPB_RICPR9.860e-2334.34Chaperone protein clpB OS=Rickettsia prowazekii GN... [more]
CLPB_BORPE9.860e-2335.03Chaperone protein clpB OS=Bordetella pertussis GN=... [more]
CLPB_BORPA9.860e-2335.03Chaperone protein clpB OS=Bordetella parapertussis... [more]
CLPB_BORBR9.860e-2335.03Chaperone protein clpB OS=Bordetella bronchiseptic... [more]
CLPB_AGRT52.197e-2233.33Chaperone protein clpB OS=Agrobacterium tumefacien... [more]

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Properties
Property NameValue
Genbank descriptionC34007G02EF PostHarvC1 Citrus clementina cDNA clone C34007G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930453 ID=FC930453; Name=FC930453; organism=Citrus clementina; type=EST; length=712bp
GAGACGAAGAGAAACCAAACACGCAGACGATCGAAGCATACACAAAAGCC
TTAAGAAAAGAGCTATTCATTTCTTCAACCTCCCATCGAGGAAAGTTTCG
TAAGGATTGTATACGCTAAAGAGTACAGATGAATCCTGACAAATTCACCC
ACAAGACCAATGAGGCCATTGCCATGGCTCATGAACTGGCAACAAGCGCT
GGTCATGCGCAATTCACTCCTCTGCATCTTGCAGTTGCGCTGCTATCTGA
CCCCAGTGGCATCTTTGCTCAGGCAATCAACAATGCTGGTGGCGAAAATG
CTGCGCAGTCAGCAGAACCAGTGTTCAATCAAGCTATGAAGAAACTCCCA
TCTCAAACTCCAGCCCCCGATGAAATTCCAGCTAGTACCACACTCATCAA
AGTAATTAGACGTGCCCAAGCCGCTCAAAAAGCGCATGGAGACACCCATT
TAGCTGTTGACCAGTTAATTCTAGGACTTCTTGAGGATTCCCAGATTGGG
GATTTGTTCAAGGAAGCTGGAGTTGCCGTAGCAAGAGTGAAATCCGAGGT
GGAAAAGCTTCGTGGGAAGGAAGGGAGGAAGGTGGAGAGTGCTTCAGGGG
ATACTACTTTCCAAGCTCTCAAGACGTATGGGAGAGACCTTGTCGAACAG
GCAGGAAAGCTTGATCCTGTCATTGGCCGAGATGAAGAAAATAGAAAGGG
TGTTCGAATTCT
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