FC930453

Overview
NameFC930453
Unique NameFC930453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_ENTFA (Chaperone protein clpB OS=Enterococcus faecalis GN=clpB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 59/200 (29.50%), Postives = 101/200 (50.50%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPA--STTLIKVIRRAQAAQKAHGDTHLAVDQLILGL--LEDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQ--AGKLDPVIGRDEENRKGVRI 710
            MN +K T    EAIA A ++A +  H +    HL    L  P+        +AG +  A   E   + A+ + PS      +     S  L  +++ A + ++   D  L+ + ++L L  L++ ++     + G+    ++  +E++RG  G +V S + +  ++AL+ YG DLV+Q  AGK DP+IGRDEE R  +RI
Sbjct:    1 MNIEKMTTTLQEAIAEAQKVAVTRQHQEIDIAHLWKIFLQ-PNHFGRNFYTDAGLDVDAFERE--VDNALDEYPSVAGGNVQYGQNLSQNLFHLLQEADSLREEFQDEFLSTEIVLLALMKLKNYRLTKYLMQQGITEKELRKNIEEMRG--GDRVTSQNQEEQYKALEKYGVDLVQQVKAGKQDPIIGRDEEIRDVIRI 195          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_CORDI (Chaperone protein clpB OS=Corynebacterium diphtheriae GN=clpB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 57/192 (29.69%), Postives = 90/192 (46.88%), Query Frame = 3
Query:  147 THKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPA-STTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQ-IGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            T KT EA+  A + A++AG+    P HL  A+L    GI    +   G +      E      + KLP    A    P  +   + V+  AQ      GD +++ + L+  +   +    +L  + G     +K     +RG   +KV + S +  FQAL+ Y  DL  +A  GK+DPVIGRD+E R+ V++
Sbjct:    7 TTKTQEALQEALQKASAAGNPDIRPEHLLAAILGQEDGIAIPVLRATGVDPDVVRREA--EALVAKLPKAEGANLANPNFNRDALSVLNNAQELAGELGDEYVSTEVLLAAVARGTNDAAELLTKRGATYDVIKGVFPSVRGN--KKVTTESPEDQFQALEKYSTDLTARAREGKIDPVIGRDQEIRRVVQV 194          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_HELPJ (Chaperone protein clpB OS=Helicobacter pylori J99 GN=clpB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 52/186 (27.96%), Postives = 92/186 (49.46%), Query Frame = 3
Query:  138 DKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEE 689
            +K T + +E +  A  LA    +A+ TP+H+  A+L++  GI  QA+     +  A     V ++  K       +   I  +  LI+ +  AQ      GD+ +A D     LL +  + +   +  +    ++  +E LR  +GR ++  + D+  ++L+ +G DL ++A   KLDPVIGRDEE
Sbjct:    5 EKMTDQLHETLDSAIALALHHKNAEVTPMHMLFAMLNNSQGILIQALQKMPVDIEALKLS-VQSELNKFAKVSQISKQNIQLNQALIQSLENAQGLMAKRGDSFIATDAY---LLANMNLFESVLKPYLDTKELQKTLESLR--KGRTIQDKNDDSNLESLEKFGIDLTQKALENKLDPVIGRDEE 184          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_HELPY (Chaperone protein clpB OS=Helicobacter pylori GN=clpB PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 52/186 (27.96%), Postives = 93/186 (50.00%), Query Frame = 3
Query:  138 DKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEE 689
            +K T + +E +  A  LA    +A+ TP+H+  A+L++  GI  QA+     +  A     V ++  K       +   I  +  LI+ +  AQ      GD+ +A D   + LL +  + +   +  +    ++  +E LR  +GR ++  + D+  ++L+ +G DL ++A   KLDPVIGRDEE
Sbjct:    5 EKMTDQLHETLDSALALALHHKNAEVTPMHMLFAMLNNSQGILIQALQKMPVDIQALRLS-VQSELNKFAKVSQISKQNIQLNQALIQSLENAQGLMAKRGDSFIATD---VYLLANMGLFESVLKPYLDAKELQKTLESLR--KGRTIQDKNDDSNLESLEKFGIDLTQKALENKLDPVIGRDEE 184          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_LACLA (Chaperone protein clpB OS=Lactococcus lactis subsp. lactis GN=clpB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 43/113 (38.05%), Postives = 65/113 (57.52%), Query Frame = 3
Query:  384 STTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQ--IGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQ--AGKLDPVIGRDEENRKGVRI 710
            S  L ++   A    +  GD +L+ + ++L L E  Q  +       G+  A+ ++ +EKLRG  G KV S + + T++AL+ YG DLV Q  +GK DPVIGRDEE R  +R+
Sbjct:   85 SPDLFQIFTEADKIAQKMGDEYLSTEIILLALFELKQNPLTSYLVSHGLTKAKAQAAIEKLRG--GDKVTSQNAEETYKALEKYGVDLVAQVKSGKQDPVIGRDEEIRDVIRV 195          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_LACLM (Chaperone protein clpB OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=clpB PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 43/113 (38.05%), Postives = 65/113 (57.52%), Query Frame = 3
Query:  384 STTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQ--IGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQ--AGKLDPVIGRDEENRKGVRI 710
            S  L +V   A    +  GD +L+ + ++L L E  Q  + +     G+  A+ ++ +EKLRG  G KV S + + T++AL+ YG DLV Q  +G  DPVIGRDEE R  +R+
Sbjct:   85 SPDLFQVFTEADKIAQKMGDEYLSTEIILLALFELKQNPLTEYLVSHGLTKAKAQAAIEKLRG--GDKVTSQNAEETYKALEKYGVDLVAQVKSGNQDPVIGRDEEIRDVIRV 195          
The following BLAST results are available for this feature:
BLAST of FC930453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
CLPB_ENTFA1.578e-1229.50Chaperone protein clpB OS=Enterococcus faecalis GN... [more]
CLPB_CORDI1.578e-1229.69Chaperone protein clpB OS=Corynebacterium diphther... [more]
CLPB_HELPJ3.515e-1227.96Chaperone protein clpB OS=Helicobacter pylori J99 ... [more]
CLPB_HELPY7.830e-1227.96Chaperone protein clpB OS=Helicobacter pylori GN=c... [more]
CLPB_LACLA2.278e-1138.05Chaperone protein clpB OS=Lactococcus lactis subsp... [more]
CLPB_LACLM3.886e-1138.05Chaperone protein clpB OS=Lactococcus lactis subsp... [more]

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Properties
Property NameValue
Genbank descriptionC34007G02EF PostHarvC1 Citrus clementina cDNA clone C34007G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930453 ID=FC930453; Name=FC930453; organism=Citrus clementina; type=EST; length=712bp
GAGACGAAGAGAAACCAAACACGCAGACGATCGAAGCATACACAAAAGCC
TTAAGAAAAGAGCTATTCATTTCTTCAACCTCCCATCGAGGAAAGTTTCG
TAAGGATTGTATACGCTAAAGAGTACAGATGAATCCTGACAAATTCACCC
ACAAGACCAATGAGGCCATTGCCATGGCTCATGAACTGGCAACAAGCGCT
GGTCATGCGCAATTCACTCCTCTGCATCTTGCAGTTGCGCTGCTATCTGA
CCCCAGTGGCATCTTTGCTCAGGCAATCAACAATGCTGGTGGCGAAAATG
CTGCGCAGTCAGCAGAACCAGTGTTCAATCAAGCTATGAAGAAACTCCCA
TCTCAAACTCCAGCCCCCGATGAAATTCCAGCTAGTACCACACTCATCAA
AGTAATTAGACGTGCCCAAGCCGCTCAAAAAGCGCATGGAGACACCCATT
TAGCTGTTGACCAGTTAATTCTAGGACTTCTTGAGGATTCCCAGATTGGG
GATTTGTTCAAGGAAGCTGGAGTTGCCGTAGCAAGAGTGAAATCCGAGGT
GGAAAAGCTTCGTGGGAAGGAAGGGAGGAAGGTGGAGAGTGCTTCAGGGG
ATACTACTTTCCAAGCTCTCAAGACGTATGGGAGAGACCTTGTCGAACAG
GCAGGAAAGCTTGATCCTGTCATTGGCCGAGATGAAGAAAATAGAAAGGG
TGTTCGAATTCT
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