FC930453

Overview
NameFC930453
Unique NameFC930453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_WOLPM (Chaperone protein clpB OS=Wolbachia pipientis wMel GN=clpB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 70/199 (35.18%), Postives = 103/199 (51.76%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLP-SQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLL--EDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M+ +KFT K    I  A   A  AGH  F P HL   +L D SG+    IN  GG    QS     + A+KKLP  + P    +  S  + KV   +    K + D+ +AV++L+ GL   +D  +G +  E GV   ++ S V ++R  +G   +S + +    A K Y +D+ E A  GKLDPVIGRDEE R+ +++
Sbjct:    1 MDLNKFTEKAKSLIQSAQMKALGAGHQIFMPEHLLKVMLEDESGLVQDLINACGGN--VQSISDAVDSAIKKLPVIEGPGSGGLQLSREIAKVFEDSIGIAKRNKDSFVAVERLLQGLTAQKDDTVGKILAENGVTPQKLNSVVAEMR--KGSSADSPNSEEKLNAAKKYTKDVTELAMQGKLDPVIGRDEEIRRTMQV 195          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_NITEU (Chaperone protein clpB OS=Nitrosomonas europaea GN=clpB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 68/197 (34.52%), Postives = 98/197 (49.75%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  DKFT K  +A+A A  +A    H    P HL +AL+    G     +  AG    AQ       Q++K LP       EI  S  L  ++       +  GD ++A +  +L  LED  + G L K+ G   A ++  V+ +RG  G KV  A  + + +ALK Y  DL E+A  GKLDPVIGRD+E R+ +++
Sbjct:    1 MRFDKFTTKFQQALADAQSMALGQDHPYIEPQHLLLALMQQDDGSITSLLQRAGVN--AQPLRQALTQSLKLLPKVEGTGGEINVSRDLANLLNLTDKEAQKRGDQYIASEMFLLAALEDKGETGRLLKQYGATRAALEQAVDSVRG--GEKVTDAEAEGSREALKKYTLDLTERARSGKLDPVIGRDDEIRRTIQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_GEOSL (Chaperone protein clpB OS=Geobacter sulfurreducens GN=clpB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.391e-22
Identity = 71/199 (35.68%), Postives = 106/199 (53.27%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAA-QSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQ--IGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            + P+K T KT EA+A A +LA   G+    P HL V+LL    G+ A  I   GG  AA +SA  V    +K+LP  + A  +   S  L +++  AQ       D  ++ + L+LG   D Q        +AGV+   V + + ++RG  G +V   + + T+QAL  Y RDL + A  GKLDPVIGRD+E R+ +++
Sbjct:    2 IRPEKMTIKTQEALAGAQQLAARQGNGSIEPEHLLVSLLEQEGGLIAPIIQKVGGAPAALRSAADVL---VKRLPQVSGATAQAYLSPALNRILDAAQREADTMKDEFVSTEHLLLGFFADRQCAAARALLDAGVSRDNVLAALMEIRG--GERVTDQNPEDTYQALAKYARDLTDLARQGKLDPVIGRDDEIRRVLQV 195          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_RHILO (Chaperone protein clpB OS=Rhizobium loti GN=clpB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 63/198 (31.82%), Postives = 104/198 (52.53%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLI--LGLLEDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLV--EQAGKLDPVIGRDEENRKGVRI 710
            MN +K++ +    I  A  +A S  H QFTP H+   L+ D  G+ A  I  AGG    +  +     A++ +P       ++  +  L KV   A+   K  GD+ + V++L+  L + + ++  D+  +AGV    +   +  +R  +GR  +SAS +  + ALK Y RDL    +AGKLDPVIGRD+E R+ +++
Sbjct:    1 MNLEKYSERVRGFIQSAQTMALSRNHQQFTPEHILKVLVDDDEGLAASLIERAGGN--VRDVKLGVETALEAMPKVEGGNGQLYLAQPLAKVFSTAEELAKKAGDSFVTVERLLQALTMEKSAKTADILAKAGVTAQALNQVINDVR--KGRTADSASAEQNYDALKKYARDLTADARAGKLDPVIGRDDEIRRTIQV 194          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNPX (Chaperone protein clpB 1 OS=Synechococcus sp. (strain WH8102) GN=clpB1 PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 66/199 (33.17%), Postives = 109/199 (54.77%), Query Frame = 3
Query:  123 VQMNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIG-DLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            +Q   ++FT +   AI  A +LA ++ H Q    HL +ALL   +G+  + ++  G +    + E      +++LPS   APD +    +L K + RA+  +   GD+ +A++ L+L L ED + G  L  +AGV    +K  +  +RG +   V   + + T+++L  YGRDL   A  G+LDPVIGRDEE R+ ++I
Sbjct:    1 MQPTAEQFTEQAWAAIVAAQQLAQASRHQQLETEHLLLALLRQ-NGLAGRILSKTGVD--VTTFEASVEGHLQRLPSLGSAPDSVFLGRSLNKALDRAEQRRDGFGDSFIAIEHLLLALAEDDRCGRQLLSQAGVTTNTLKEAITAVRGNQ--TVTDQNPEATYESLAKYGRDLTAAARDGQLDPVIGRDEEIRRTIQI 194          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_PASMU (Chaperone protein clpB OS=Pasteurella multocida GN=clpB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.172e-21
Identity = 62/196 (31.63%), Postives = 101/196 (51.53%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            MN +KFT K  +A+  A  LA    +    P+HL  ALL+   G  A  +  +G        E   N  + KLP  + +  ++  S +L+ ++       +   D  ++ +  +L  LED  +GD+ K+ GV    ++  +EK+RG  G+ V   + + + QAL+ Y  DL  +A  GKLDPVIGRDEE R+ +++
Sbjct:    1 MNIEKFTTKFQQALQEAQSLAIGKDNQFIEPVHLLTALLNQQGGSTAPILTASGANLPLLRNE--LNAELSKLPQVSGSGGDVQVSRSLVNLLNLCDKLAQQRQDKFISSELFLLAALEDKTLGDVLKKCGVKKENLQQAIEKVRG--GQNVNDPNAEESRQALEKYTIDLTARAESGKLDPVIGRDEEIRRAIQV 192          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_ECOLI (Chaperone protein clpB OS=Escherichia coli (strain K12) GN=clpB PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.172e-21
Identity = 67/197 (34.01%), Postives = 100/197 (50.76%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  D+ T+K   A+A A  LA    +    PLHL  ALL+   G  +  + +A G NA Q    + NQA+ +LP       ++  S  L++V+       +  GD  ++ +  +L  LE    + D+ K AG   A +   +E++RG  G  V     +   QALK Y  DL E+A  GKLDPVIGRDEE R+ +++
Sbjct:    1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSA-GINAGQLRTDI-NQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRG--GESVNDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_ECOL6 (Chaperone protein clpB OS=Escherichia coli O6 GN=clpB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.172e-21
Identity = 67/197 (34.01%), Postives = 100/197 (50.76%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  D+ T+K   A+A A  LA    +    PLHL  ALL+   G  +  + +A G NA Q    + NQA+ +LP       ++  S  L++V+       +  GD  ++ +  +L  LE    + D+ K AG   A +   +E++RG  G  V     +   QALK Y  DL E+A  GKLDPVIGRDEE R+ +++
Sbjct:    1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSA-GINAGQLRTDI-NQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRG--GESVNDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_ECO57 (Chaperone protein clpB OS=Escherichia coli O157:H7 GN=clpB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.172e-21
Identity = 67/197 (34.01%), Postives = 100/197 (50.76%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  D+ T+K   A+A A  LA    +    PLHL  ALL+   G  +  + +A G NA Q    + NQA+ +LP       ++  S  L++V+       +  GD  ++ +  +L  LE    + D+ K AG   A +   +E++RG  G  V     +   QALK Y  DL E+A  GKLDPVIGRDEE R+ +++
Sbjct:    1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSA-GINAGQLRTDI-NQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRG--GESVNDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_SALTY (Chaperone protein clpB OS=Salmonella typhimurium GN=clpB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.066e-21
Identity = 67/197 (34.01%), Postives = 99/197 (50.25%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  D+ T+K   A+A A  LA    +    PLHL  ALL+   G     + +A G NA Q      +QA+ +LP       ++  S+ L++V+       +  GD  ++ +  +L  LE    + DL K AG   A +   +E++RG  G  V     +   QALK Y  DL E+A  GKLDPVIGRDEE R+ +++
Sbjct:    1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSIRPLLTSA-GINAGQ-LRTAIDQALSRLPQVEGTGGDVQPSSELVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLTDLLKSAGATTANITQAIEQMRG--GESVNDQGAEDQRQALKKYTVDLTERAEQGKLDPVIGRDEEIRRTIQV 193          
The following BLAST results are available for this feature:
BLAST of FC930453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
CLPB_WOLPM2.869e-2235.18Chaperone protein clpB OS=Wolbachia pipientis wMel... [more]
CLPB_NITEU2.869e-2234.52Chaperone protein clpB OS=Nitrosomonas europaea GN... [more]
CLPB_GEOSL6.391e-2235.68Chaperone protein clpB OS=Geobacter sulfurreducens... [more]
CLPB_RHILO8.347e-2231.82Chaperone protein clpB OS=Rhizobium loti GN=clpB P... [more]
CLPB1_SYNPX8.347e-2233.17Chaperone protein clpB 1 OS=Synechococcus sp. (str... [more]
CLPB_PASMU3.172e-2131.63Chaperone protein clpB OS=Pasteurella multocida GN... [more]
CLPB_ECOLI3.172e-2134.01Chaperone protein clpB OS=Escherichia coli (strain... [more]
CLPB_ECOL63.172e-2134.01Chaperone protein clpB OS=Escherichia coli O6 GN=c... [more]
CLPB_ECO573.172e-2134.01Chaperone protein clpB OS=Escherichia coli O157:H7... [more]
CLPB_SALTY7.066e-2134.01Chaperone protein clpB OS=Salmonella typhimurium G... [more]

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Properties
Property NameValue
Genbank descriptionC34007G02EF PostHarvC1 Citrus clementina cDNA clone C34007G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930453 ID=FC930453; Name=FC930453; organism=Citrus clementina; type=EST; length=712bp
GAGACGAAGAGAAACCAAACACGCAGACGATCGAAGCATACACAAAAGCC
TTAAGAAAAGAGCTATTCATTTCTTCAACCTCCCATCGAGGAAAGTTTCG
TAAGGATTGTATACGCTAAAGAGTACAGATGAATCCTGACAAATTCACCC
ACAAGACCAATGAGGCCATTGCCATGGCTCATGAACTGGCAACAAGCGCT
GGTCATGCGCAATTCACTCCTCTGCATCTTGCAGTTGCGCTGCTATCTGA
CCCCAGTGGCATCTTTGCTCAGGCAATCAACAATGCTGGTGGCGAAAATG
CTGCGCAGTCAGCAGAACCAGTGTTCAATCAAGCTATGAAGAAACTCCCA
TCTCAAACTCCAGCCCCCGATGAAATTCCAGCTAGTACCACACTCATCAA
AGTAATTAGACGTGCCCAAGCCGCTCAAAAAGCGCATGGAGACACCCATT
TAGCTGTTGACCAGTTAATTCTAGGACTTCTTGAGGATTCCCAGATTGGG
GATTTGTTCAAGGAAGCTGGAGTTGCCGTAGCAAGAGTGAAATCCGAGGT
GGAAAAGCTTCGTGGGAAGGAAGGGAGGAAGGTGGAGAGTGCTTCAGGGG
ATACTACTTTCCAAGCTCTCAAGACGTATGGGAGAGACCTTGTCGAACAG
GCAGGAAAGCTTGATCCTGTCATTGGCCGAGATGAAGAAAATAGAAAGGG
TGTTCGAATTCT
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