FC930453

Overview
NameFC930453
Unique NameFC930453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_SALTI (Chaperone protein clpB OS=Salmonella typhi GN=clpB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.066e-21
Identity = 67/197 (34.01%), Postives = 99/197 (50.25%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  D+ T+K   A+A A  LA    +    PLHL  ALL+   G     + +A G NA Q      +QA+ +LP       ++  S+ L++V+       +  GD  ++ +  +L  LE    + DL K AG   A +   +E++RG  G  V     +   QALK Y  DL E+A  GKLDPVIGRDEE R+ +++
Sbjct:    1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSIRPLLTSA-GINAGQ-LRTAIDQALSRLPQVEGTGGDVQPSSELVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLTDLLKSAGATTANITQAIEQMRG--GESVNDQGAEDQRQALKKYTVDLTERAEQGKLDPVIGRDEEIRRTIQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_GLOVI (Chaperone protein clpB OS=Gloeobacter violaceus GN=clpB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.066e-21
Identity = 66/196 (33.67%), Postives = 108/196 (55.10%), Query Frame = 3
Query:  132 NPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIGD-LFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            NP++FT K  +AI    E+A      Q    HL  ALL    G+ A +I    G N  +  E V  Q + + P  T     +    +L  ++ RA+  +K +GD  ++++ L+L   +D + G  + +E  +  A++K+ V ++RG +  KV S + ++T+++L  YGRDL + A  GKLDPVIGRDEE R+ ++I
Sbjct:    5 NPNQFTEKAWDAIVRTTEVAKEYRQQQLESEHLFKALLDQDGGL-AGSIFTKAGVNLTKLGERV-EQFINRQPKLTNPGQSVYLGRSLDALLDRAEGFRKEYGDDFISIEHLVLAFAKDVRFGQQILREFSLDEAKLKAVVAQVRGNQ--KVTSQNPESTYESLDKYGRDLTQLAREGKLDPVIGRDEEIRRTIQI 196          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_SHIFL (Chaperone protein clpB OS=Shigella flexneri GN=clpB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.228e-21
Identity = 66/197 (33.50%), Postives = 99/197 (50.25%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  D+ T+K   A+A A  LA    +    PLHL  ALL+   G  +  + +A G NA Q    + NQA+ +LP       ++  S  L++V+       +  GD  ++ +  +L  LE    + D+ K  G   A +   +E++RG  G  V     +   QALK Y  DL E+A  GKLDPVIGRDEE R+ +++
Sbjct:    1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSA-GINAGQLRTDI-NQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKATGATTANITQAIEQMRG--GESVNDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_DESVH (Chaperone protein clpB OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=clpB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.685e-20
Identity = 70/201 (34.83%), Postives = 114/201 (56.72%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTP--APDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED---SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M+  KFT K+ +A+A A  +A   GH +    HLA AL+    G+  + ++  G +  A  AE +  +  K+     P  AP +I  S  L  V+ +AQ   +   D +++V+ +   LLE+   + +G + +E  ++  +V   +E +RG +  +V SA+ + T++AL+ YGRDLVE+A  GKLDPVIGRD E R+ +RI
Sbjct:    1 MDIGKFTEKSQQALAEAQNIAVRFGHQEVDAEHLADALVRQEQGLVPRLLDRMGQKPEA-FAEALERELGKRPAVSGPGAAPGQIFVSKRLNAVLVKAQDFARQLKDEYVSVEHIFCVLLEEPASTIMGRIAREFSLSREKVLGVLEDVRGSQ--RVTSANPEDTYEALQKYGRDLVEEARKGKLDPVIGRDAEIRRVIRI 198          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_BIFLO (Chaperone protein clpB OS=Bifidobacterium longum GN=clpB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.685e-20
Identity = 67/195 (34.36%), Postives = 107/195 (54.87%), Query Frame = 3
Query:  141 KFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIP-ASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLL--EDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            KFT    EA+  A + A++AG+AQ   LH+  ALL   +G+    I  AGG+  A  A      A+  LPS + +    P AS  L   I +A+   +  GD +++ + L++G+   + +Q  ++ ++ GV  A ++  V  +RG  G KV S   + +++AL+ Y  DL   A  GKLDPVIGRD+E R+ ++I
Sbjct:    4 KFTTMAQEAVGDAIQSASAAGNAQVETLHVMDALLRQENGVARSLIEAAGGDPQAIGA--AVRNALVALPSASGSSTSQPQASRQLTAAIAQAEKEMQQMGDEYVSTEHLLIGIAASKPNQSAEILEKNGVTAASLRKAVPGVRG--GAKVTSPDAEGSYKALEKYSTDLTAAAKEGKLDPVIGRDQEIRRVIQI 194          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNE7 (Chaperone protein clpB 1 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB1 PE=2 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 7.812e-20
Identity = 65/196 (33.16%), Postives = 107/196 (54.59%), Query Frame = 3
Query:  132 NPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIGDLF-KEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            NP++FT K  EAI    ++A  A H Q    HL +ALL +P G+    +  AG E  A   +    + + + P  +     +    +L +++ +A   +K  GD  ++V+ LIL    DS+ G L  +E  V   +++  ++++RG +  KV   + +  ++AL+ YGRDL E A  GKLDPVIGRD+E R+ ++I
Sbjct:    5 NPNQFTEKAWEAIVRTTDVAKQAQHQQIESEHLFLALLQEP-GLALNILKKAGLE--AAQLQQFTERFIARQPKVSGGNQSVYLGRSLDQLLDQADQFRKDFGDEFISVEHLILSFPRDSRFGRLLSQEFKVDEKQLRQIIQQIRGSQ--KVTDQNPEGKYEALEKYGRDLTEMARRGKLDPVIGRDDEIRRTIQI 195          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_YERPE (Chaperone protein clpB OS=Yersinia pestis GN=clpB PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19
Identity = 65/197 (32.99%), Postives = 99/197 (50.25%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  D+ T K   A+A A  LA    +    PLHL  ALL+   G     + +AG   A   ++    QA+ +LP       ++  S  L++V+       +   D  ++ +  +L +LED   + D+ K AG  VA +   +E +RG  G KV+    +   QALK +  DL E+A  GKLDPVIGRDEE R+ +++
Sbjct:    1 MRLDRLTSKFQLALADAQSLALGRDNQFIEPLHLMSALLNQDGGTVRPLLTSAGINVARLRSD--IEQALGRLPQVEGTGGDVQPSNELVRVLNLCDKLAQKRSDKFISSELFVLAVLEDRGTLTDMLKAAGATVAIIDKAIETMRG--GDKVDDQGAEDQRQALKKFTIDLTERAEQGKLDPVIGRDEEIRRTIQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_PROMM (Chaperone protein clpB OS=Prochlorococcus marinus (strain MIT 9313) GN=clpB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19
Identity = 61/199 (30.65%), Postives = 111/199 (55.78%), Query Frame = 3
Query:  123 VQMNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIG-DLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            +Q   D+FT K   AI +A +LA    H Q    HL ++LL   + +  + +  AG   +  + +      +++ P+   APD +     +  ++ +A+  ++A GD+ ++++ L+L L  D++ G  L  +AGV   ++K  ++ +RG +  KV   + + T+++L+ YGRDL   A  GKLDPVIGRD+E R+ ++I
Sbjct:    1 MQPTADQFTEKGWAAIVLAQQLAQQRKHQQLETEHLLLSLLQQ-NALAGRILEKAGV--SIGNLQTAVEAHLQEQPTMQAAPDSVYLGKGVNDLLDQAEKHKQAFGDSFISIEHLLLALAGDNRCGRKLLNQAGVDAGKLKVAIDAVRGNQ--KVTDQNPEGTYESLEKYGRDLSAAAREGKLDPVIGRDDEIRRTIQI 194          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNY3 (Chaperone protein clpB 2 OS=Synechocystis sp. (strain PCC 6803) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19
Identity = 62/196 (31.63%), Postives = 108/196 (55.10%), Query Frame = 3
Query:  132 NPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIG-DLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            +P+KFT K  EAIA   E+A      Q    HL  ALL + +G+     N AG   +        N  + + P  +   + I    +L K++  A+ A+  +GD +++++ L+    +D ++G +L++E G+   ++   ++++RG +  KV   + +  +++L+ YGRDL E A  GKLDPVIGRDEE R+ ++I
Sbjct:    5 DPNKFTEKAWEAIAKTPEIAKQHRQQQIETEHLLSALL-EQNGLATSIFNKAGA--SIPRVNDQVNSFIAQQPKLSNPSESIYLGRSLDKLLDNAEIAKSKYGDDYISIEHLMAAYGQDDRLGKNLYREIGLTENKLAEIIKQIRGTQ--KVTDQNPEGKYESLEKYGRDLTELAREGKLDPVIGRDEEVRRTIQI 195          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_RALSO (Chaperone protein clpB OS=Ralstonia solanacearum GN=clpB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 65/197 (32.99%), Postives = 105/197 (53.30%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  DK T +  EA+A A  LA    +    PLHL +A+L  P G     +  AG    A+  E   + A+K+LP Q    +++     L  +++  +      GD  +A +  +L + +D  + G + +E G+A   +++ ++ +RG  G+ V SA  ++  +ALK Y  DL EQA  GKLDPVIGRD+E R+ ++I
Sbjct:    1 MRLDKLTTRFQEALADAQSLALGNDNPYIEPLHLLLAMLRQPDGATKNLLARAGVN--AKGLEIALDNAIKRLP-QVQGGEQVQVGRDLGSLLQATEKEGIKRGDQFIASELFLLAVADDKGEAGRVAREHGLARRALEAAIDAVRG--GQTVGSAEAESQREALKKYTIDLTEQARIGKLDPVIGRDDEIRRAIQI 192          
The following BLAST results are available for this feature:
BLAST of FC930453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
CLPB_SALTI7.066e-2134.01Chaperone protein clpB OS=Salmonella typhi GN=clpB... [more]
CLPB_GLOVI7.066e-2133.67Chaperone protein clpB OS=Gloeobacter violaceus GN... [more]
CLPB_SHIFL9.228e-2133.50Chaperone protein clpB OS=Shigella flexneri GN=clp... [more]
CLPB_DESVH2.685e-2034.83Chaperone protein clpB OS=Desulfovibrio vulgaris (... [more]
CLPB_BIFLO2.685e-2034.36Chaperone protein clpB OS=Bifidobacterium longum G... [more]
CLPB1_SYNE77.812e-2033.16Chaperone protein clpB 1 OS=Synechococcus elongatu... [more]
CLPB_YERPE1.020e-1932.99Chaperone protein clpB OS=Yersinia pestis GN=clpB ... [more]
CLPB_PROMM1.020e-1930.65Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB2_SYNY31.020e-1931.63Chaperone protein clpB 2 OS=Synechocystis sp. (str... [more]
CLPB_RALSO1.333e-1932.99Chaperone protein clpB OS=Ralstonia solanacearum G... [more]

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Properties
Property NameValue
Genbank descriptionC34007G02EF PostHarvC1 Citrus clementina cDNA clone C34007G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930453 ID=FC930453; Name=FC930453; organism=Citrus clementina; type=EST; length=712bp
GAGACGAAGAGAAACCAAACACGCAGACGATCGAAGCATACACAAAAGCC
TTAAGAAAAGAGCTATTCATTTCTTCAACCTCCCATCGAGGAAAGTTTCG
TAAGGATTGTATACGCTAAAGAGTACAGATGAATCCTGACAAATTCACCC
ACAAGACCAATGAGGCCATTGCCATGGCTCATGAACTGGCAACAAGCGCT
GGTCATGCGCAATTCACTCCTCTGCATCTTGCAGTTGCGCTGCTATCTGA
CCCCAGTGGCATCTTTGCTCAGGCAATCAACAATGCTGGTGGCGAAAATG
CTGCGCAGTCAGCAGAACCAGTGTTCAATCAAGCTATGAAGAAACTCCCA
TCTCAAACTCCAGCCCCCGATGAAATTCCAGCTAGTACCACACTCATCAA
AGTAATTAGACGTGCCCAAGCCGCTCAAAAAGCGCATGGAGACACCCATT
TAGCTGTTGACCAGTTAATTCTAGGACTTCTTGAGGATTCCCAGATTGGG
GATTTGTTCAAGGAAGCTGGAGTTGCCGTAGCAAGAGTGAAATCCGAGGT
GGAAAAGCTTCGTGGGAAGGAAGGGAGGAAGGTGGAGAGTGCTTCAGGGG
ATACTACTTTCCAAGCTCTCAAGACGTATGGGAGAGACCTTGTCGAACAG
GCAGGAAAGCTTGATCCTGTCATTGGCCGAGATGAAGAAAATAGAAAGGG
TGTTCGAATTCT
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