FC930453

Overview
NameFC930453
Unique NameFC930453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB1_THEEB (Chaperone protein clpB 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19
Identity = 62/196 (31.63%), Postives = 109/196 (55.61%), Query Frame = 3
Query:  132 NPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIGD-LFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDL--VEQAGKLDPVIGRDEENRKGVRI 710
            NP++FT K   AIA   +LA  A H      HL  +LL +  G+  Q    AG   + Q    + ++ + + P +   P  +    +L K++ RA+ A+K  GD  ++++ L+L   +D + G  LF++ G++   ++  ++++RG +  KV   + +  + AL+ YGRDL  + + GKLDPVIGRD+E R+ ++I
Sbjct:    5 NPNQFTEKAWAAIARTPDLAKQAQHQNLESEHLMKSLL-EQEGLATQIFQKAGC--SVQRIRDLTDEFISRQP-KISHPSGVYLGQSLDKLLDRAEEARKQFGDEFISIEHLVLAFAQDDRFGKKLFQDIGLSEKVLREAIQQIRGSQ--KVTDQNPEGKYAALEKYGRDLTLLARQGKLDPVIGRDDEIRRVIQI 194          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_HAEDU (Chaperone protein clpB OS=Haemophilus ducreyi GN=clpB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 67/199 (33.67%), Postives = 100/199 (50.25%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAIN--NAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            MN +KFT K  EA+  A  LA +  +A   P+HL  AL+    G  A      N   +      E + NQ    LP  T    +  AS  LI+++ +     +   D+ ++ +  +L  L+D   +G LFK  G+    V   + ++RG  G  V + + + T QAL+ Y  DL E+A  GKLDPVIGRDEE R+ V++
Sbjct:    1 MNFEKFTTKLQEALNEAQSLAVAKDNAYIEPVHLLYALVKQQDGAIAPLFTTLNVSTQTLINELELILNQ----LPQVTGTTTQ--ASQQLIRLLNQTAKLAQQFNDSFISSELFLLAALDDHGSLGKLFKAFGLTKENVTQAISQMRG--GESVNNQNAEQTRQALQKYTIDLTERAKTGKLDPVIGRDEEIRRTVQV 191          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_MEIRU (Chaperone protein clpB OS=Meiothermus ruber GN=clpB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 65/198 (32.83%), Postives = 104/198 (52.53%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAG--GENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            MN +++T +  +AIA +  LA  + H++    HLA  +L D +G+ A+ +  AG   +N  Q+A+      + +LP  +        S+ L   + RA+       D  +A+D L+L L E           G+  + V+  ++++RG  GR V S   + T+ AL+ YG DL  QA  GKLDPVIGRDEE R+ ++I
Sbjct:    1 MNLERYTEQARQAIAQSQVLARESAHSKIDLPHLAAVMLRDAAGLPAKIVQKAGQNPQNIYQAAQ----SELGRLPKVSGTEGGQYLSSRLASALGRAEKLADELKDRFVALDTLLLALAETGY-------GGLQASAVRQALQEIRG--GRTVNSEHAEGTYNALEQYGLDLTRQAEEGKLDPVIGRDEEIRRVIQI 185          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB2_STRAW (Chaperone protein clpB 2 OS=Streptomyces avermitilis GN=clpB2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 64/202 (31.68%), Postives = 106/202 (52.48%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQT---PAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQ---IGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M+ ++ T K+ EA+  A   A   GH +    HL +ALL    G+  + +  AG E   +       + +   P  T    AP ++  +  L +++  A+   K   D +++V+ L+L L E+S     G L K+AG+      S + ++RG +  +V SA+ +  ++AL+ YGRDLV +A  G+LDPVIGRD E R+  +I
Sbjct:    1 MDMNRLTQKSQEALQEAQTAAGRMGHTEVDGEHLLLALLDQEDGLIPRLLQQAGTE--PKELRAAVREELSHRPKATGPGAAPGQVFVTQRLARLLDAAEREAKRLKDEYVSVEHLLLALAEESSSTAAGLLLKQAGITRDSFLSALTQVRGNQ--RVTSANPEVAYEALEKYGRDLVLEARSGRLDPVIGRDAEIRRVTQI 198          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_WOLSU (Chaperone protein clpB OS=Wolinella succinogenes GN=clpB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 66/194 (34.02%), Postives = 103/194 (53.09%), Query Frame = 3
Query:  138 DKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLP-SQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            +K TH+  E +  A  LA  A + +    H+A ALL + + I  QA+N  G + +A   E      + +LP S +   + I  S  L   + +A+A     GD  +AVD  +L  L++  +  LF +  + V  +K  +E +RG  G K+ESA+ D   ++L  YG DL ++A   KLDPVIGRDEE  + ++I
Sbjct:    5 EKMTHQLRETLEQALSLALHAKNPEVDLPHMAWALLINSTSILNQALNKMGVDKSALELEA--KSLVDRLPQSSSLTKENIKISKRLADSLTQAEALGVKGGDKFIAVDTWLLANLKEEPLKSLFSKY-LDVNELKKNLESIRG--GAKIESATDDENLESLAKYGIDLTQKALENKLDPVIGRDEEISRMMQI 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_XANCP (Chaperone protein clpB OS=Xanthomonas campestris pv. campestris GN=clpB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.287e-18
Identity = 62/197 (31.47%), Postives = 101/197 (51.27%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  DK T +  +A+A A  LA    H    P+H+  ALL D SG   + + +  G N     E +  +A+  LP  +     +     L +++ +     + HGD  +A +  +L   +D S +G   + AG    ++++ ++KLRG  G  V+S + +   QAL+ Y  DL  +A  GKLDPVIGRDEE R+ +++
Sbjct:    1 MRMDKLTSRFQQALADAQSLAVGRDHNIIEPVHVLAALL-DQSGGSTRPLLSQSGVNVPALRERL-GEALDTLPKVSGQEGNLSIGNDLNRLLNQTDKLAQQHGDAFIASEWFVLAAADDASPLGVALRAAGGDKKKIEAAIDKLRG--GETVQSENAEEQRQALEKYTIDLTARAESGKLDPVIGRDEEIRRTIQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_LACPL (Chaperone protein clpB OS=Lactobacillus plantarum GN=clpB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.287e-18
Identity = 64/198 (32.32%), Postives = 103/198 (52.02%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDS--QIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            MNP++FT    +A+  A ++A +  H +    HL    L+ P  +  Q  + AG +      E         + S          S++L  +++ A A +KA GD +LA D L L L++ +  Q+     + G+   +VK+ V+++RG  G++V S + +  +QAL+ YG DLV+QA  G  DPVIGRDEE    +RI
Sbjct:    1 MNPEQFTESLQQALQQAQQIAQTRRHQEIGVPHL-FKFLTQPGELVRQIFSEAGADLDQLQTELDRELDDIAVVSGGNVQYGGSMSSSLATLMQAADAKRKALGDDYLATDTLALALMDQTGDQLTKYLNQQGITAGQVKNAVDRIRG--GQRVTSRNQEDQYQALEKYGVDLVKQARQGNQDPVIGRDEEILDVIRI 195          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFA (Chaperone protein clpB OS=Xylella fastidiosa GN=clpB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.599e-18
Identity = 61/197 (30.96%), Postives = 99/197 (50.25%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQ-IGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  DK T +   A+A A  LA    H    P+H+  ALL    G     +  AG  N     E +  + ++ LP  +     +  S  L ++  R     + HGD  +A +  +L +++DS  +G   + AG    ++++ ++KLRG  G  V++ + +   QAL+ Y  DL  +A  GKLDPVIGRDEE R+ +++
Sbjct:    1 MRMDKLTSRFQNALADAQSLAVGRDHTIIEPVHVFSALLDQQGGSTRPLLMQAG-VNVPLLRERL-TEILEALPKVSGQTVNVSPSNELSRLFHRTDKLAQQHGDQFMASEWFVLAVVDDSGGLGQALRAAGAEKKKIEAAIDKLRG--GETVQTENAEEQRQALEKYTIDLTARAESGKLDPVIGRDEEIRRTIQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_XANAC (Chaperone protein clpB OS=Xanthomonas axonopodis pv. citri GN=clpB PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.599e-18
Identity = 62/197 (31.47%), Postives = 101/197 (51.27%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  DK T +  +A+A A  LA    H    P+H+  ALL D SG   + + +  G N     E +  +A+  LP  +     +     L +++ +     + HGD  +A +  +L   +D S +G   + AG    ++++ ++KLRG  G  V+S + +   QAL+ Y  DL  +A  GKLDPVIGRDEE R+ +++
Sbjct:    1 MRMDKLTSRFQQALADAQSLAVGRDHNIIEPVHVLAALL-DQSGGSTRPLLSQAGVNVPLLRERL-GEALDTLPKVSGQEGNLSIGNDLNRLLNQTDKLAQQHGDAFIASEWFVLAAADDASPLGVALRAAGGDKKKIEAAIDKLRG--GETVQSENAEEQRQALEKYTIDLTARAESGKLDPVIGRDEEIRRTIQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_SHEON (Chaperone protein clpB OS=Shewanella oneidensis GN=clpB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.599e-18
Identity = 60/197 (30.46%), Postives = 102/197 (51.78%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  D+ T+K   AI+ A  LA    H    PLHL +ALL+  SG     +  AG   +A     + +Q +++LP       ++  S  LI+++       +   D +++ +  +L  LE    +    K++G     ++  +E++RG  G+KV+  + +   QALK +  DL E+A  GKLDPVIGRD+E R+ +++
Sbjct:    1 MRLDRMTNKFQLAISDAQSLALGRDHQFIEPLHLMMALLNQDSGSIHPLLTQAGIRVSA--LRSLLSQELERLPQVEGTGGDVQLSQGLIRLLNLCDKLAQKRKDKYISSELFVLAALEGCDALAQCLKKSGATKELMEQTIEQVRG--GQKVDDPNAEDQRQALKKFTVDLTERAEQGKLDPVIGRDDEIRRTIQV 193          
The following BLAST results are available for this feature:
BLAST of FC930453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
CLPB1_THEEB2.273e-1931.63Chaperone protein clpB 1 OS=Thermosynechococcus el... [more]
CLPB_HAEDU2.969e-1933.67Chaperone protein clpB OS=Haemophilus ducreyi GN=c... [more]
CLPB_MEIRU3.877e-1932.83Chaperone protein clpB OS=Meiothermus ruber GN=clp... [more]
CLPB2_STRAW5.064e-1931.68Chaperone protein clpB 2 OS=Streptomyces avermitil... [more]
CLPB_WOLSU2.513e-1834.02Chaperone protein clpB OS=Wolinella succinogenes G... [more]
CLPB_XANCP4.287e-1831.47Chaperone protein clpB OS=Xanthomonas campestris p... [more]
CLPB_LACPL4.287e-1832.32Chaperone protein clpB OS=Lactobacillus plantarum ... [more]
CLPB_XYLFA5.599e-1830.96Chaperone protein clpB OS=Xylella fastidiosa GN=cl... [more]
CLPB_XANAC5.599e-1831.47Chaperone protein clpB OS=Xanthomonas axonopodis p... [more]
CLPB_SHEON5.599e-1830.46Chaperone protein clpB OS=Shewanella oneidensis GN... [more]

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Properties
Property NameValue
Genbank descriptionC34007G02EF PostHarvC1 Citrus clementina cDNA clone C34007G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930453 ID=FC930453; Name=FC930453; organism=Citrus clementina; type=EST; length=712bp
GAGACGAAGAGAAACCAAACACGCAGACGATCGAAGCATACACAAAAGCC
TTAAGAAAAGAGCTATTCATTTCTTCAACCTCCCATCGAGGAAAGTTTCG
TAAGGATTGTATACGCTAAAGAGTACAGATGAATCCTGACAAATTCACCC
ACAAGACCAATGAGGCCATTGCCATGGCTCATGAACTGGCAACAAGCGCT
GGTCATGCGCAATTCACTCCTCTGCATCTTGCAGTTGCGCTGCTATCTGA
CCCCAGTGGCATCTTTGCTCAGGCAATCAACAATGCTGGTGGCGAAAATG
CTGCGCAGTCAGCAGAACCAGTGTTCAATCAAGCTATGAAGAAACTCCCA
TCTCAAACTCCAGCCCCCGATGAAATTCCAGCTAGTACCACACTCATCAA
AGTAATTAGACGTGCCCAAGCCGCTCAAAAAGCGCATGGAGACACCCATT
TAGCTGTTGACCAGTTAATTCTAGGACTTCTTGAGGATTCCCAGATTGGG
GATTTGTTCAAGGAAGCTGGAGTTGCCGTAGCAAGAGTGAAATCCGAGGT
GGAAAAGCTTCGTGGGAAGGAAGGGAGGAAGGTGGAGAGTGCTTCAGGGG
ATACTACTTTCCAAGCTCTCAAGACGTATGGGAGAGACCTTGTCGAACAG
GCAGGAAAGCTTGATCCTGTCATTGGCCGAGATGAAGAAAATAGAAAGGG
TGTTCGAATTCT
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