FC930453

Overview
NameFC930453
Unique NameFC930453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_MYCTU (Chaperone protein clpB OS=Mycobacterium tuberculosis GN=clpB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 63/191 (32.98%), Postives = 97/191 (50.79%), Query Frame = 3
Query:  147 THKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLE-DSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            T KT  A+  A + A++AG+ +  P HL +ALL+   GI A  +   G E A   AE    + + +LP  T A  +   S   +  I  AQ       D +++ + +++GL   DS +  L    G +   ++    K+RG    +V S   + T+QAL+ Y  DL  +A  GKLDPVIGRD E R+ V++
Sbjct:    7 TTKTQAALTAALQAASTAGNPEIRPAHLLMALLTQNDGIAAPLLEAVGVEPATVRAET--QRLLDRLPQATGASTQPQLSRESLAAITTAQQLATELDDEYVSTEHVMVGLATGDSDVAKLLTGHGASPQALREAFVKVRG--SARVTSPEPEATYQALQKYSTDLTARAREGKLDPVIGRDNEIRRVVQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_MYCBO (Chaperone protein clpB OS=Mycobacterium bovis GN=clpB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 63/191 (32.98%), Postives = 97/191 (50.79%), Query Frame = 3
Query:  147 THKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLE-DSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            T KT  A+  A + A++AG+ +  P HL +ALL+   GI A  +   G E A   AE    + + +LP  T A  +   S   +  I  AQ       D +++ + +++GL   DS +  L    G +   ++    K+RG    +V S   + T+QAL+ Y  DL  +A  GKLDPVIGRD E R+ V++
Sbjct:    7 TTKTQAALTAALQAASTAGNPEIRPAHLLMALLTQNDGIAAPLLEAVGVEPATVRAET--QRLLDRLPQATGASTQPQLSRESLAAITTAQQLATELDDEYVSTEHVMVGLATGDSDVAKLLTGHGASPQALREAFVKVRG--SARVTSPEPEATYQALQKYSTDLTARAREGKLDPVIGRDNEIRRVVQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB1_ANASP (Chaperone protein clpB 1 OS=Anabaena sp. (strain PCC 7120) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 56/197 (28.43%), Postives = 109/197 (55.33%), Query Frame = 3
Query:  132 NPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGEN-AAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIG-DLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            +P+KFT K  E I  + ++  +    Q    HL +AL+ DP+ +  + +  A  +    Q     F Q   K+       D++    +L  ++ RA+  ++   D +++V+ ++L  ++D ++G  + K   V  A++++ ++ +RG +  KV   + ++ ++AL+ +GRDL EQA  GKLDPVIGRD+E R+ +++
Sbjct:    5 DPNKFTDKAWEVIVKSQDIVRAYQQQQLDVEHLILALIEDPTSLAVRILGRAEIDPIRLQQQLEAFTQRQTKVGKS----DQLYLGRSLDVMLDRAEEIRERMKDGYISVEHMLLAFVDDERVGRKVLKGFNVDSAKIEASIKAVRGSQ--KVTDQNPESRYEALQKFGRDLTEQAKSGKLDPVIGRDDEIRRVIQV 195          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_TREPA (Chaperone protein clpB OS=Treponema pallidum GN=clpB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.550e-18
Identity = 63/197 (31.98%), Postives = 100/197 (50.76%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLE-DSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            MN D++T K +EA+  A  LA +  H Q    HL  ALLS   GI +  I   G +      E +  Q +++ P  T    +   + TL K   RA+     + D +++ + L+L + E DS    L    G+    + + ++ +RG   ++V S   ++TFQ L+ Y RDL   A   K+DPVIGRDEE R+ +++
Sbjct:    1 MNTDRYTVKASEALNDAISLAEAENHGQVEEEHLLHALLSQKDGIISPLIEKIGAKPDFLYDELL--QCLRRKPRVTGPAAQTRCAPTLSKACARAERLALKNQDEYVSCEHLLLAISETDSNTARLLHSQGITSKTISAALKDIRG--SKRVTSQDPESTFQCLEKYCRDLTTLAREEKIDPVIGRDEEIRRVMQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_MYCPA (Chaperone protein clpB OS=Mycobacterium paratuberculosis GN=clpB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.550e-18
Identity = 63/191 (32.98%), Postives = 97/191 (50.79%), Query Frame = 3
Query:  147 THKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLE-DSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            T KT  A+  A + A++AG+ +  P HL +ALL+   GI A  +   G E A   AE    + + +LP  + A  +   S   +  I  AQ       D +++ + L++GL   DS +  L    G +   ++    K+RG    +V S   + T+QAL+ Y  DL  +A  GKLDPVIGRD E R+ V++
Sbjct:    7 TTKTQAALTAALQAASAAGNPEIRPAHLLMALLTQADGIAAPLLEAVGVEPATIRAEA--ERMLARLPQASGASSQPQLSRESLAAITTAQHLATELDDEYVSTEHLMVGLATGDSDVAKLLTGHGASPQALREAFVKVRG--SARVTSPDPEATYQALEKYSTDLTARAREGKLDPVIGRDNEIRRVVQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_BACCR (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=clpB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.550e-18
Identity = 66/202 (32.67%), Postives = 107/202 (52.97%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAIN--NAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIP---ASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQ--AGKLDPVIGRDEENRKGVRI 710
            M+ ++ T KT EAI  A  LA S  H +   +HL +ALL +  G+  +     N   E   Q AE +    +KK PS T +  E+     ++ L +++ RA    +   D +++V+ ++L   E+   I  LF    +    +   +  +RG +  +V S + + T++AL+ YGRDLV +  AGK+DPVIGRD E R+ +RI
Sbjct:    1 MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLLALLEEQDGLAVRIFQKMNVDIEALKQGAESL----IKKKPSVTGSGAEVGKLYVTSALQQLLVRAGKEAEKLQDDYISVEHVLLAFSEEKGDINQLFTRLHITKDNLLQSLMTVRGNQ--RVTSQNPEATYEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRI 196          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFT (Chaperone protein clpB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=clpB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.127e-17
Identity = 60/197 (30.46%), Postives = 98/197 (49.75%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQ-IGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  DK T +   A+A A  LA    H    P+H+   LL    G     +  AG  N     E +  + ++ LP  +     +  S  L ++  R     + HGD  +A +  +L +++DS  +G   + AG    ++++ ++KLRG  G  V++ + +   QAL+ Y  DL  +A  GKLDPVIGRDEE R+ +++
Sbjct:    1 MRMDKLTSRFQNALADAQSLAVGRDHTIIEPVHVFSVLLDQQGGSTRPLLVQAG-VNVPLLRERL-TEILEALPKVSGQTVNVSPSNELSRLFHRTDKLAQQHGDQFMASEWFVLAVVDDSGGLGQALRAAGAEKKKIEAAIDKLRG--GETVQTENAEEQRQALEKYTIDLTARAESGKLDPVIGRDEEIRRTIQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB2_ANASP (Chaperone protein clpB 2 OS=Anabaena sp. (strain PCC 7120) GN=clpB2 PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.629e-17
Identity = 61/196 (31.12%), Postives = 107/196 (54.59%), Query Frame = 3
Query:  132 NPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIG-DLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            NP++FT K  EAIA   E+A      Q    HL  ALL +  G+ +  +  AG     Q       Q +++ P  +     +    +L  ++ RA+A +K   D +++++ L+L   +D + G  LF+E  +  +++K+ ++++RG +   V   + +  +Q+L+ YGRDL E A  G+LDPVIGRD+E R+ ++I
Sbjct:    5 NPNQFTEKAWEAIAHTPEIAKQHQQQQIESEHLMKALL-EQDGLASGILTKAGVN--LQKISDRTEQYIQRQPKVSGNSTSVYLGRSLDTLLDRAEAHRKDFQDEYISIEHLLLAYPKDDRFGKGLFQEFALDESKLKNIIKQVRGSQ--TVTDQNPEGKYQSLEKYGRDLTEAARKGQLDPVIGRDDEIRRTIQI 195          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_VIBPA (Chaperone protein clpB OS=Vibrio parahaemolyticus GN=clpB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.084e-17
Identity = 58/197 (29.44%), Postives = 96/197 (48.73%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  D+FT K   AI+ A  LA    H    P+HL VALL          +     +           + + +LP  +    ++  S+++  +        +   D++++ +  +L  LED   +G L KE G+   +V   +EK+RG  G+KV   + +   QAL+ +  DL E+A  GKLDPVIGRD+E R+ +++
Sbjct:    1 MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTMLDVD--VTHLRSKLGEMLDRLPKVSGIGGDVQLSSSMGTLFNLCDKVAQKRQDSYISSEVFLLAALEDRGPLGQLLKEVGLTEQKVSQAIEKIRG--GQKVNDPNAEELRQALEKFTIDLTERAEQGKLDPVIGRDDEIRRTIQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_CHRVO (Chaperone protein clpB OS=Chromobacterium violaceum GN=clpB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.084e-17
Identity = 65/197 (32.99%), Postives = 95/197 (48.22%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDS-QIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  DK T K  +A+  A  LA +  +    P HL +A+L D        +  AG    A  A     QA+ +LP       EI  S  L  ++  A       GD  +A +  +  L +D  + G L KE G   A +++ ++ +RG  G  V SA  +   +ALK Y  DL E+A  GKLDPVIGRD+E R+ +++
Sbjct:    1 MRFDKLTTKFQQALGDAQSLAVANDNPYIEPQHLLLAMLDDAEAGVGGLLARAGVNVPALKAG--LKQAIDRLPRVQGHGGEITVSRDLANLLNIADKIAMKLGDEFIASELYLSALSQDKGEAGRLLKEHGGNHASIQAAIDAVRG--GESVNSADAEGQREALKKYTMDLTERARQGKLDPVIGRDDEIRRAIQV 193          
The following BLAST results are available for this feature:
BLAST of FC930453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
CLPB_MYCTU7.312e-1832.98Chaperone protein clpB OS=Mycobacterium tuberculos... [more]
CLPB_MYCBO7.312e-1832.98Chaperone protein clpB OS=Mycobacterium bovis GN=c... [more]
CLPB1_ANASP7.312e-1828.43Chaperone protein clpB 1 OS=Anabaena sp. (strain P... [more]
CLPB_TREPA9.550e-1831.98Chaperone protein clpB OS=Treponema pallidum GN=cl... [more]
CLPB_MYCPA9.550e-1832.98Chaperone protein clpB OS=Mycobacterium paratuberc... [more]
CLPB_BACCR9.550e-1832.67Chaperone protein clpB OS=Bacillus cereus (strain ... [more]
CLPB_XYLFT2.127e-1730.46Chaperone protein clpB OS=Xylella fastidiosa (stra... [more]
CLPB2_ANASP3.629e-1731.12Chaperone protein clpB 2 OS=Anabaena sp. (strain P... [more]
CLPB_VIBPA8.084e-1729.44Chaperone protein clpB OS=Vibrio parahaemolyticus ... [more]
CLPB_CHRVO8.084e-1732.99Chaperone protein clpB OS=Chromobacterium violaceu... [more]

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Properties
Property NameValue
Genbank descriptionC34007G02EF PostHarvC1 Citrus clementina cDNA clone C34007G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930453 ID=FC930453; Name=FC930453; organism=Citrus clementina; type=EST; length=712bp
GAGACGAAGAGAAACCAAACACGCAGACGATCGAAGCATACACAAAAGCC
TTAAGAAAAGAGCTATTCATTTCTTCAACCTCCCATCGAGGAAAGTTTCG
TAAGGATTGTATACGCTAAAGAGTACAGATGAATCCTGACAAATTCACCC
ACAAGACCAATGAGGCCATTGCCATGGCTCATGAACTGGCAACAAGCGCT
GGTCATGCGCAATTCACTCCTCTGCATCTTGCAGTTGCGCTGCTATCTGA
CCCCAGTGGCATCTTTGCTCAGGCAATCAACAATGCTGGTGGCGAAAATG
CTGCGCAGTCAGCAGAACCAGTGTTCAATCAAGCTATGAAGAAACTCCCA
TCTCAAACTCCAGCCCCCGATGAAATTCCAGCTAGTACCACACTCATCAA
AGTAATTAGACGTGCCCAAGCCGCTCAAAAAGCGCATGGAGACACCCATT
TAGCTGTTGACCAGTTAATTCTAGGACTTCTTGAGGATTCCCAGATTGGG
GATTTGTTCAAGGAAGCTGGAGTTGCCGTAGCAAGAGTGAAATCCGAGGT
GGAAAAGCTTCGTGGGAAGGAAGGGAGGAAGGTGGAGAGTGCTTCAGGGG
ATACTACTTTCCAAGCTCTCAAGACGTATGGGAGAGACCTTGTCGAACAG
GCAGGAAAGCTTGATCCTGTCATTGGCCGAGATGAAGAAAATAGAAAGGG
TGTTCGAATTCT
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