FC930453

Overview
NameFC930453
Unique NameFC930453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_VIBCH (Chaperone protein clpB OS=Vibrio cholerae GN=clpB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16
Identity = 61/197 (30.96%), Postives = 100/197 (50.76%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  D+FT K   AI+ A  LA    H    P+HL VALL D +G   + +      +  Q    +  + + +LP  +    ++  S+ L  +        +   D +++ +  +L  +ED   +G L KE G+   +V   +EK+RG  G+KV   + +   QAL+ +  DL E+A  GKLDPVIGRD+E R+ +++
Sbjct:    1 MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALL-DQNGSPIRPLLTMLNVDVMQLRSKL-GEMLDRLPKVSGIGGDVQLSSALGSLFNLCDKVAQKRQDAYISSEIYLLAAIEDKGPLGHLLKEFGLTEKKVSEAIEKIRG--GQKVNDPNAEELRQALEKFTIDLTERAEQGKLDPVIGRDDEIRRTIQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNY3 (Chaperone protein clpB 1 OS=Synechocystis sp. (strain PCC 6803) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16
Identity = 60/198 (30.30%), Postives = 103/198 (52.02%), Query Frame = 3
Query:  132 NPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAG--GENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIG-DLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            +P KFT +  +AI  + E+A    +      H+ +ALL    G+ A+    A   GE   Q  E   N+  K+        +++    +L  ++ RA AA+ +  D  ++V+ L++G  ED ++G    +   +    ++  ++ +RG +  KV   + +  ++AL  YGRDL EQA  GKLDPVIGRDEE R+ +++
Sbjct:    5 DPTKFTEQAWDAIVKSQEVARRYKNTNLEVEHILLALLEQDMGLAARIFQRAAVDGEGLRQQLEIFTNRQPKQA-----YVEQLYLGRSLDVMLDRADAARSSWEDKFISVEHLLVGFAEDDRVGRKTLRAFNLDPQDLELAIKAIRGSQ--KVTEPNQEEKYEALDKYGRDLTEQARQGKLDPVIGRDEEIRRVIQV 195          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVY (Chaperone protein clpB OS=Vibrio vulnificus (strain YJ016) GN=clpB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.801e-16
Identity = 59/197 (29.95%), Postives = 101/197 (51.27%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  D+FT K   AI+ A  LA    H    P+HL VALL D +G   + +      +       + ++ + +LP  +    ++  S+ +  +        +   D +++ +  +L  +ED   +G LFKE G+   +V   +E++RG  G+KV   + +   QAL+ +  DL E+A  GKLDPVIGRD+E R+ +++
Sbjct:    1 MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALL-DQNGSPIRPLLTILNVDVTHLRSKL-SEMLDRLPKVSGIGGDVQLSSAMGAMFNLCDKIAQKRQDAYISSEIFLLAAIEDRGPLGQLFKELGLTEQKVSQAIEQIRG--GQKVNDQNAEELRQALEKFTIDLTERAEQGKLDPVIGRDDEIRRTIQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVU (Chaperone protein clpB OS=Vibrio vulnificus GN=clpB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.801e-16
Identity = 59/197 (29.95%), Postives = 101/197 (51.27%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  D+FT K   AI+ A  LA    H    P+HL VALL D +G   + +      +       + ++ + +LP  +    ++  S+ +  +        +   D +++ +  +L  +ED   +G LFKE G+   +V   +E++RG  G+KV   + +   QAL+ +  DL E+A  GKLDPVIGRD+E R+ +++
Sbjct:    1 MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALL-DQNGSPIRPLLTILNVDVTHLRSKL-SEMLDRLPKVSGIGGDVQLSSAMGAMFNLCDKIAQKRQDAYISSEIFLLAAIEDRGPLGQLFKELGLTEQKVSQAIEQIRG--GQKVNDQNAEELRQALEKFTIDLTERAEQGKLDPVIGRDDEIRRTIQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_PHOLL (Chaperone protein clpB OS=Photorhabdus luminescens subsp. laumondii GN=clpB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.801e-16
Identity = 57/197 (28.93%), Postives = 95/197 (48.22%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  D+ T+K   A+A A   A    +    P+HL  +LL    G     + + G +    S +     A+++LP       ++  S  L++ +       +  GD  ++ +  +L  LE+   + D+ K  G    ++   +E++RG  G KV+    +   QALK Y  DL E+A  GKLDPVIGRDEE R+ +++
Sbjct:    1 MRLDRLTNKFQLALADAQSFALGHDNQFIEPIHLMSSLLKQEGGSIRPLLTSIGIDAGRFSNQ--LELALERLPRVQGIGGDVQPSNDLVRHLNLCDKLAQKAGDNFISSELFVLAALEERGTLSDILKAVGATKEKITKAIEQMRG--GEKVDDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_HAEIN (Chaperone protein clpB OS=Haemophilus influenzae GN=clpB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.801e-16
Identity = 60/197 (30.46%), Postives = 97/197 (49.24%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            MN +KFT K  EA++    LA    +    P+HL  ALL+   G  A  I  A G N A     +  + + KLP       ++  S  LI ++       + + D  ++ +  +   LE+   I D+ K+ G    ++   ++ +RG  G+ V   + + + QAL+ Y  DL  +A  GKLDPVIGRDEE R+ +++
Sbjct:    1 MNIEKFTTKFQEALSERQSLAIGKDNQFIEPVHLLTALLNQQGGSIA-PILTASGVNVALLRNELKTE-LNKLPQVIGNGGDVQLSRQLINLLNLCDKFAQQNQDKFISSELFLFAALEERGTISDILKKCGAKKEQISQAIQHIRG--GQNVNDQNAEESRQALEKYTIDLTARAESGKLDPVIGRDEEIRRAIQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_BDEBA (Chaperone protein clpB OS=Bdellovibrio bacteriovorus GN=clpB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.801e-16
Identity = 57/192 (29.69%), Postives = 95/192 (49.48%), Query Frame = 3
Query:  147 THKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLE--DSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            T K+ EA+  A  LA         P HL + L+    GI  + ++      A   AE      + K P  T    ++ AS  L K+ + A+   +  GD++++ +   + +L+  DS++  LFK+  V     ++ + ++RGK+  KV     +  ++ L  Y RDL   A  GKLDPV+GRDEE R+ V++
Sbjct:    2 TRKSQEAMQAAARLAERKSSPSVEPEHLLMELVQQTEGIVPRILDKLNVPQAQFLAE--LRTKIDKFPQVTGGGQKMFASPRLEKIFQAAETEAQEWGDSYISTEHFFMAMLKGGDSELNGLFKKNKVTAEAARTALTEIRGKQ--KVTDDDPENKYEVLNKYARDLTALAAEGKLDPVVGRDEEIRRVVQV 189          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_TREDE (Chaperone protein clpB OS=Treponema denticola GN=clpB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.352e-16
Identity = 59/197 (29.95%), Postives = 101/197 (51.27%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            MN DK+T K +EA+  A  LA    H+Q    HL   LL    GI    +   G   + +S     ++ + + P  T    +   S  L KV   A+       D +++ + L+L L E   + G+L +  G+ +  + S ++++RG    +V S + ++TF++L+ + RDL + A   K+DPVIGRDEE R+ +++
Sbjct:    1 MNIDKYTVKASEAVQEASSLAQRDDHSQVESEHLLYVLLEQEDGIVPPLVEKIG--VSPESLLDDLDKMLDRKPRVTGQSAQTYISPLLAKVFANAEGYADKLKDEYVSTEHLLLALSESKDETGELLRSRGINLKNLLSALKEIRG--NNRVTSENPESTFRSLEKFCRDLTQLAKNEKIDPVIGRDEEIRRVMQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_THET2 (Chaperone protein clpB OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=clpB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.352e-16
Identity = 64/197 (32.49%), Postives = 101/197 (51.27%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIGDLFKEAGV-AVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            MN +++T    EA+A A  LA    H      HL   LL D  G+  + +  AG +  A   + +  + + +LP    A      ++ L   + RA+A  +   D ++AVD L+L L E +         G+  +  +K  +++LRG  GR V++   ++T+ AL+ YG DL   A  GKLDPVIGRDEE R+ ++I
Sbjct:    1 MNLERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDEGGLAWRLLEKAGADPKA--LKELQERELSRLPKVEGAEVGQYLTSRLSGALNRAEALMEELKDRYVAVDTLVLALAEATP--------GLPGLEALKGALKELRG--GRTVQTEHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQI 185          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_MYCLE (Chaperone protein clpB OS=Mycobacterium leprae GN=clpB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.352e-16
Identity = 60/191 (31.41%), Postives = 96/191 (50.26%), Query Frame = 3
Query:  147 THKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGL-LEDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            T K   A+  A + A+SAG+ +  P+HL +A+L    GI A  +   G E      E    + +++LP  +    +   S   +  I  AQ       D +++ + L+LGL + DS +  L    G +   ++    K+RG    +V S+  + T+QAL+ Y  DL  Q+  GKLDPVIGRD E R+ V++
Sbjct:    7 TTKMQVALTSALQAASSAGNPEIRPVHLLLAMLMQNDGIAAPLLETVGVEPDIVRNEA--QRLLERLPQASGCSSQPQLSRESLAAITTAQQLATEMDDEYVSTEHLMLGLAMGDSDVAKLLTGHGASPQVLREAFVKIRG--SARVTSSDPEFTYQALEKYSTDLTAQSGEGKLDPVIGRDNEIRRVVQV 193          
The following BLAST results are available for this feature:
BLAST of FC930453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
CLPB_VIBCH1.056e-1630.96Chaperone protein clpB OS=Vibrio cholerae GN=clpB ... [more]
CLPB1_SYNY31.056e-1630.30Chaperone protein clpB 1 OS=Synechocystis sp. (str... [more]
CLPB_VIBVY1.801e-1629.95Chaperone protein clpB OS=Vibrio vulnificus (strai... [more]
CLPB_VIBVU1.801e-1629.95Chaperone protein clpB OS=Vibrio vulnificus GN=clp... [more]
CLPB_PHOLL1.801e-1628.93Chaperone protein clpB OS=Photorhabdus luminescens... [more]
CLPB_HAEIN1.801e-1630.46Chaperone protein clpB OS=Haemophilus influenzae G... [more]
CLPB_BDEBA1.801e-1629.69Chaperone protein clpB OS=Bdellovibrio bacteriovor... [more]
CLPB_TREDE2.352e-1629.95Chaperone protein clpB OS=Treponema denticola GN=c... [more]
CLPB_THET22.352e-1632.49Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPB_MYCLE2.352e-1631.41Chaperone protein clpB OS=Mycobacterium leprae GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34007G02EF PostHarvC1 Citrus clementina cDNA clone C34007G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930453 ID=FC930453; Name=FC930453; organism=Citrus clementina; type=EST; length=712bp
GAGACGAAGAGAAACCAAACACGCAGACGATCGAAGCATACACAAAAGCC
TTAAGAAAAGAGCTATTCATTTCTTCAACCTCCCATCGAGGAAAGTTTCG
TAAGGATTGTATACGCTAAAGAGTACAGATGAATCCTGACAAATTCACCC
ACAAGACCAATGAGGCCATTGCCATGGCTCATGAACTGGCAACAAGCGCT
GGTCATGCGCAATTCACTCCTCTGCATCTTGCAGTTGCGCTGCTATCTGA
CCCCAGTGGCATCTTTGCTCAGGCAATCAACAATGCTGGTGGCGAAAATG
CTGCGCAGTCAGCAGAACCAGTGTTCAATCAAGCTATGAAGAAACTCCCA
TCTCAAACTCCAGCCCCCGATGAAATTCCAGCTAGTACCACACTCATCAA
AGTAATTAGACGTGCCCAAGCCGCTCAAAAAGCGCATGGAGACACCCATT
TAGCTGTTGACCAGTTAATTCTAGGACTTCTTGAGGATTCCCAGATTGGG
GATTTGTTCAAGGAAGCTGGAGTTGCCGTAGCAAGAGTGAAATCCGAGGT
GGAAAAGCTTCGTGGGAAGGAAGGGAGGAAGGTGGAGAGTGCTTCAGGGG
ATACTACTTTCCAAGCTCTCAAGACGTATGGGAGAGACCTTGTCGAACAG
GCAGGAAAGCTTGATCCTGTCATTGGCCGAGATGAAGAAAATAGAAAGGG
TGTTCGAATTCT
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