FC930453

Overview
NameFC930453
Unique NameFC930453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_LISIN (Chaperone protein clpB OS=Listeria innocua GN=clpB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.072e-16
Identity = 61/200 (30.50%), Postives = 107/200 (53.50%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLP--SQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQ--IGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQ--AGKLDPVIGRDEENRKGVRI 710
            M+  KFT +  + IA A  LA ++ H +   +H+   LL++    FA+   +    N  ++ + V +++++K+P  S +        S  L +++R A+  QK   D  ++ + LIL +++     I    K+   +  ++   + K+RG  G+KV S + +  ++AL  YGRDLV +  +GKLDPVIGRD E R  +RI
Sbjct:    1 MDLQKFTQQVQQTIADAQNLAIASEHQEIDVIHVFKVLLTESD--FAKRAYDVAEVNV-EALQKVVDESLRKIPVVSGSGVNYGQAMSQALFQLMRDAEKEQKQLDDDFVSTEHLILAVMDQKSNPITVELKKQNKSKKQINEAILKIRG--GKKVTSQNAEENYEALTKYGRDLVAEVRSGKLDPVIGRDAEIRNVIRI 195          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_BACC1 (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 10987) GN=clpB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.072e-16
Identity = 65/202 (32.18%), Postives = 104/202 (51.49%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAIN--NAGGENAAQSAEPVFNQAMKKLPSQTPAPDE---IPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQ--AGKLDPVIGRDEENRKGVRI 710
            M+ ++ T KT EAI  A  LA S  H +   +HL   LL +  G+  +     N   E   Q AE +    +KK PS T +  E   +  +  L +++ RA    +   D +++V+ ++L   E+   I  LF    +    +   +  +RG +  +V S + + T++AL+ YGRDLV +  AGK+DPVIGRD E R+ +RI
Sbjct:    1 MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLFTLLEEQDGLAVRIFQKMNVDIEALKQGAEGL----IKKKPSVTGSGAEAGKLYITGALQQLLVRAGKEAEKLQDDYISVEHVLLAFTEEKGDINQLFTRFHITKDNLLQSLMTVRGNQ--RVTSQNPEATYEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRI 196          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_STRCO (Chaperone protein clpB OS=Streptomyces coelicolor GN=clpB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.012e-16
Identity = 60/195 (30.77%), Postives = 100/195 (51.28%), Query Frame = 3
Query:  141 KFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLS--DPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLL-EDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            + T+++ +AI  A   A + G+A  TP HL +ALL   D   I            A ++        +  +   T AP +   S  ++ V+  AQA  K  GD +L+ + L+LG+  +    G++ +  G +  +++    K RG  GR+V +A  +  ++AL+ +G DL   A  GKLDPVIGRD+E R+ V++
Sbjct:    4 ELTNRSRDAINAASNRAVTEGNADLTPAHLLLALLQGQDNENITDLLAAVEADLAAVRTGAERIVAGLPSVTGSTVAPPQ--PSREMLAVVADAQARAKELGDEYLSTEHLLLGIAAKGGAAGEVLEGQGASAKKLQEAFRKARG--GRRVTTADPEGQYKALEKFGTDLTAAARDGKLDPVIGRDQEIRRVVQV 194          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMA (Chaperone protein clpB OS=Neisseria meningitidis serogroup A GN=clpB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.012e-16
Identity = 62/197 (31.47%), Postives = 99/197 (50.25%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQI-GDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  DK T K  +A+A A  LA +A  +      +  ALL D +   A  + +AG  N  Q  + +  Q +  LP  +    +I  S  L  V+     A    GD ++A +  +L L++ +   G + KEAG     + + ++ +RG  G+ V  A+ +    ALK Y  DL ++A  GKLDPVIGRD+E R+ +++
Sbjct:    1 MRYDKLTAKFQQALAEAQSLALAADSSYLEAGFVLKALLDDQNSGAAALLAHAG-VNVPQVKQRL-QQHLNSLPKVSGQGGDILPSRELQAVLNLMDKAATKRGDAYIASELFLLALVQQNDAAGKILKEAGATEQNINAAIDAVRG--GQNVNDANAEDQRDALKKYTLDLTQRARDGKLDPVIGRDDEIRRAIQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_BACAN (Chaperone protein clpB OS=Bacillus anthracis GN=clpB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16
Identity = 64/202 (31.68%), Postives = 102/202 (50.50%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAIN--NAGGENAAQSAEPVFNQAMKKLPSQTPAPDE---IPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQ--AGKLDPVIGRDEENRKGVRI 710
            M+ ++ T KT EAI  A  LA S  H +   +HL   LL +  G+  +     N   E   Q  E      +KK PS T +  E   +  +  L +++ RA    +   D +++V+ ++L   E+   I  LF    +    +   +  +RG +  +V S + + T++AL+ YGRDLV +  AGK+DPVIGRD E R+ +RI
Sbjct:    1 MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLFTLLEEQDGLAVRIFQKMNVDIEALKQGVE----NLIKKKPSVTGSGAEAGKLYITGALQQLLVRAGKEAEKLQDDYISVEHVLLAFTEEKGDISQLFTRFHITKDNLLQSLMTVRGNQ--RVTSQNPEATYEALEKYGRDLVAEVKAGKIDPVIGRDSEIRRVIRI 196          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_PHOPR (Chaperone protein clpB OS=Photobacterium profundum GN=clpB PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.167e-15
Identity = 56/197 (28.43%), Postives = 94/197 (47.72%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDS-QIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  D+FT K   AI     LA    H    P HL VALL+         +     + +   +     + +  LP  T    E+  S  +  ++       +   D  ++ +  IL  ++D   +G L KE G+  A+++  + ++RG  G+KV+  + +   QAL+ +  DL E+A  GKLDPVIGRD+E R+ +++
Sbjct:    1 MRLDRFTSKFQMAIFDGQSLALGRDHQYIEPAHLMVALLNQDGSTIRPLLTMLNVDISQLRSR--LGELLDHLPKVTGIGGEVQLSNDMGLLLNMCDKLAQKRKDKFISSELFILAAVDDKGSLGKLLKELGLTAAKIEQAINQVRG--GQKVDDQNAEENRQALEKFTIDLTERAEQGKLDPVIGRDDEIRRTIQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_HELHP (Chaperone protein clpB OS=Helicobacter hepaticus GN=clpB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.525e-15
Identity = 58/187 (31.02%), Postives = 94/187 (50.27%), Query Frame = 3
Query:  138 DKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDE-IPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEE 689
            +K T++  E +  A  LA  + + + +  H+  ALLS+   +  QA+N    +  A   +      + KLP  +    E +  S  L   +  AQ     +GD+ +AVD  ++  L++S    +FK   V +A  K  +  LRG+   K+ES SGD   ++L  +G DL ++A    LDPVIGRD+E
Sbjct:    5 EKLTNQMKETLDSAASLALHSSNQEISLAHIYWALLSNHQSVLNQALNKMNIDKTALELQA--RSEVDKLPKSSQVQKENLSISKELSSALNLAQGEAIKNGDSFIAVDMFLIANLKESTFVAIFKPL-VDIAEFKKTLLSLRGES--KIESQSGDDNLESLSKFGIDLTQKALENTLDPVIGRDDE 186          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_THET8 (Chaperone protein clpB OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpB PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.991e-15
Identity = 63/197 (31.98%), Postives = 100/197 (50.76%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIGDLFKEAGV-AVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            MN +++T    EA+A A  LA    H      HL   LL D   +  + +  AG +  A   + +  + + +LP    A      ++ L   + RA+A  +   D ++AVD L+L L E +         G+  +  +K  +++LRG  GR V++   ++T+ AL+ YG DL   A  GKLDPVIGRDEE R+ ++I
Sbjct:    1 MNLERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKA--LKELQERELARLPKVEGAEVGQYLTSRLSGALNRAEALMEELKDRYVAVDTLVLALAEATP--------GLPGLEALKGALKELRG--GRTVQTEHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQI 185          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_PSEPK (Chaperone protein clpB OS=Pseudomonas putida (strain KT2440) GN=clpB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.991e-15
Identity = 58/197 (29.44%), Postives = 96/197 (48.73%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLL-EDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  D+ T K   AI+ A  LA    H    P+HL  ALL    G     +   G +           + + +LP       ++  S  L +++ +A    +  GD  ++ + ++L  + E+S++G L    GV+   +++ +  LRG  G  V  A+ + + QAL  Y  DL ++A  GKLDPVIGRD+E R+ V++
Sbjct:    1 MRIDRLTSKLQLAISDAQSLAVGMDHPAIEPVHLLQALLEQQGGSIKPLLMQVGFD--INGLRQGLVKELDQLPKIQNPTGDVNMSQDLARLLNQADRLAQQKGDQFISSELVLLAAMDENSKLGKLLLSQGVSKKALENAINNLRG--GAAVNDANAEESRQALDKYTVDLTKRAEEGKLDPVIGRDDEIRRTVQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMB (Chaperone protein clpB OS=Neisseria meningitidis serogroup B GN=clpB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.601e-15
Identity = 61/197 (30.96%), Postives = 98/197 (49.75%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQI-GDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  DK T K  +A+A A  LA +A  +      +  ALL D +   A  + +AG  N  Q  + +  Q +  LP  +    +I  S  L  V+     A     D ++A +  +L L++ +   G + KEAG     + + ++ +RG  G+ V  A+ +    ALK Y  DL ++A  GKLDPVIGRD+E R+ +++
Sbjct:    1 MRYDKLTAKFQQALAEAQSLALAADGSYLEAGFVLKALLDDQNSGAAALLAHAG-VNVPQVKQRL-QQHLNSLPKVSGQGGDILPSRELQAVLNLMDKAATKRSDAYIASELFLLALVQQNDATGKILKEAGATEQNINAAIDAVRG--GQNVNDANAEDQRDALKKYTLDLTQRARDGKLDPVIGRDDEIRRAIQV 193          
The following BLAST results are available for this feature:
BLAST of FC930453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
CLPB_LISIN3.072e-1630.50Chaperone protein clpB OS=Listeria innocua GN=clpB... [more]
CLPB_BACC13.072e-1632.18Chaperone protein clpB OS=Bacillus cereus (strain ... [more]
CLPB_STRCO4.012e-1630.77Chaperone protein clpB OS=Streptomyces coelicolor ... [more]
CLPB_NEIMA4.012e-1631.47Chaperone protein clpB OS=Neisseria meningitidis s... [more]
CLPB_BACAN8.938e-1631.68Chaperone protein clpB OS=Bacillus anthracis GN=cl... [more]
CLPB_PHOPR1.167e-1528.43Chaperone protein clpB OS=Photobacterium profundum... [more]
CLPB_HELHP1.525e-1531.02Chaperone protein clpB OS=Helicobacter hepaticus G... [more]
CLPB_THET81.991e-1531.98Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPB_PSEPK1.991e-1529.44Chaperone protein clpB OS=Pseudomonas putida (stra... [more]
CLPB_NEIMB2.601e-1530.96Chaperone protein clpB OS=Neisseria meningitidis s... [more]

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Properties
Property NameValue
Genbank descriptionC34007G02EF PostHarvC1 Citrus clementina cDNA clone C34007G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930453 ID=FC930453; Name=FC930453; organism=Citrus clementina; type=EST; length=712bp
GAGACGAAGAGAAACCAAACACGCAGACGATCGAAGCATACACAAAAGCC
TTAAGAAAAGAGCTATTCATTTCTTCAACCTCCCATCGAGGAAAGTTTCG
TAAGGATTGTATACGCTAAAGAGTACAGATGAATCCTGACAAATTCACCC
ACAAGACCAATGAGGCCATTGCCATGGCTCATGAACTGGCAACAAGCGCT
GGTCATGCGCAATTCACTCCTCTGCATCTTGCAGTTGCGCTGCTATCTGA
CCCCAGTGGCATCTTTGCTCAGGCAATCAACAATGCTGGTGGCGAAAATG
CTGCGCAGTCAGCAGAACCAGTGTTCAATCAAGCTATGAAGAAACTCCCA
TCTCAAACTCCAGCCCCCGATGAAATTCCAGCTAGTACCACACTCATCAA
AGTAATTAGACGTGCCCAAGCCGCTCAAAAAGCGCATGGAGACACCCATT
TAGCTGTTGACCAGTTAATTCTAGGACTTCTTGAGGATTCCCAGATTGGG
GATTTGTTCAAGGAAGCTGGAGTTGCCGTAGCAAGAGTGAAATCCGAGGT
GGAAAAGCTTCGTGGGAAGGAAGGGAGGAAGGTGGAGAGTGCTTCAGGGG
ATACTACTTTCCAAGCTCTCAAGACGTATGGGAGAGACCTTGTCGAACAG
GCAGGAAAGCTTGATCCTGTCATTGGCCGAGATGAAGAAAATAGAAAGGG
TGTTCGAATTCT
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