FC930453

Overview
NameFC930453
Unique NameFC930453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_LISMO (Chaperone protein clpB OS=Listeria monocytogenes GN=clpB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 61/200 (30.50%), Postives = 103/200 (51.50%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLP--SQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQ--IGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQ--AGKLDPVIGRDEENRKGVRI 710
            M+  KFT +  + IA A  LA ++ H +    H+   LL++    FA+ + +   E    + + V    ++K+P  S +        S  L +++R A+  Q+   D  ++ + LIL +++     I    K    A  ++K  + K+RG  G++V S + +  ++AL  YGRDLV +  +GKLDPVIGRD E R  +RI
Sbjct:    1 MDLQKFTQQVQQTIADAQNLAIASEHQEIDVAHVFKVLLTESD--FAKRVYDVA-EVDTDALQKVIENTLEKIPVVSGSGVNYGQAMSQALFQLMRDAEKEQQQLEDDFVSTEHLILAVMDQKSNPITAELKNQHKAKKQIKEAILKIRG--GKRVTSQNAEENYEALTKYGRDLVAEVRSGKLDPVIGRDAEIRNVIRI 195          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_CHLPN (Chaperone protein clpB OS=Chlamydia pneumoniae GN=clpB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 57/195 (29.23%), Postives = 98/195 (50.26%), Query Frame = 3
Query:  138 DKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQ--IGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            +KF+   +EA+  A ELA S+ H   T  HL +ALL +   +F   I +  G     +       A+ + P+      +   S  L  ++R A+   K  GD +++ D L+L     ++       +   V+   +K+ + K+R   G +++S S ++ FQ L+ Y ++L   A  GKLDPVIGRDEE R+ +++
Sbjct:    2 EKFSDAVSEALEKAFELAKSSKHTYVTENHLLLALLENTESLFYLVIKDIHGNPGLLNT--AVKDALSREPTVVEGEVDPKPSPGLQTLLRDAKQEAKTLGDEYISGDHLLLAFWSSNKEPFNSWKQTTKVSFKDLKNLITKIR--RGNRMDSPSAESNFQGLEKYCKNLTALAREGKLDPVIGRDEEIRRTIQV 192          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_CLOPE (Chaperone protein clpB OS=Clostridium perfringens GN=clpB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.436e-15
Identity = 52/200 (26.00%), Postives = 105/200 (52.50%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGE-NAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLE---DSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVE--QAGKLDPVIGRDEENRKGVRI 710
            MN DK T +  +++  A+E+A    + Q   +HL  AL++   G+        G   ++ +    V    M K+  +      + A+  + +V+ +A+   K   D++++V+ ++L +++   +  +G++ ++  +        + ++RG +  +V+S   + T++AL  YG +L+E  +  KLDPVIGRDEE R+ VRI
Sbjct:    1 MNADKMTLRVQQSLNDAYEIAVKYNNQQLDIIHLFSALVNQKDGLIPNIFEKMGVNIDSLKRDIHVQIDRMPKVLGEAAQSSGVTATRRINEVLIKAEEISKQFEDSYISVEHVMLAMIDIDKNGAVGEILRKNNITKDGFLKVLNEVRGSQ--RVDSQDPEGTYEALDKYGTNLIELVKQHKLDPVIGRDEEIRRAVRI 198          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_PSEAE (Chaperone protein clpB OS=Pseudomonas aeruginosa GN=clpB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.794e-15
Identity = 57/197 (28.93%), Postives = 98/197 (49.75%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLL-EDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  D+ T K   A++ A  LA    H    P+HL  ALL    G     +   G + AA  +    N+ +  LP       ++  S  L +++ +A    +  GD  ++ + ++L  + E++++G L    GV+   +++ V  LRG  G  V   + + + QAL  Y  D+ ++A  GKLDPVIGRD+E R+ +++
Sbjct:    1 MRIDRLTSKLQLALSDAQSLAVGHDHPAIEPVHLLSALLEQQGGSIKPLLMQVGFDIAALRSG--LNKELDALPKIQSPTGDVNLSQDLARLLNQADRLAQQKGDQFISSELVLLAAMDENTRLGKLLLGQGVSRKALENAVANLRG--GEAVNDPNVEESRQALDKYTVDMTKRAEEGKLDPVIGRDDEIRRTIQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_CLOAB (Chaperone protein clpB OS=Clostridium acetobutylicum GN=clpB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.794e-15
Identity = 56/200 (28.00%), Postives = 99/200 (49.50%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGG--ENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGL--LEDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M+ DK T K  +AI     +A    H Q   +HL +A++S   G+    +   G   E   +  E   ++ M K+  +      I A+    +V  R +   +   D +++V+ ++L L  ++   I  +  +  ++       + ++RG +  +V+++  + T+ AL  YGRDLV+ A   KLDPVIGRDEE R+ +RI
Sbjct:    1 MDVDKLTLKVQQAINDCQTIAVRYNHQQIDTIHLFMAIISQEDGLIPNILGKMGADVETVKRDTEAELDR-MPKVLGEGAQNASIYATRRFEEVFVRGEKISRDFKDLYISVEHVMLALMDIDSGAIKSILDKNNISKKEFLKALREVRGNQ--RVDTSDPEGTYDALNKYGRDLVKDAKKHKLDPVIGRDEEIRRVIRI 197          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB1_STRAW (Chaperone protein clpB 1 OS=Streptomyces avermitilis GN=clpB1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.794e-15
Identity = 59/195 (30.26%), Postives = 97/195 (49.74%), Query Frame = 3
Query:  141 KFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSG-IFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIP-ASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            + T+++ +AI  A   A S GH   TP HL +ALL           +     + AA  A     + + KLPS T +    P  +  L+ V+  A    +  GD  L+ + L++G+  +    GD+  + G +  ++    +K RG  GR+V +   +  ++AL+ +G D    A  GKLDPVIGRD+E R+ V++
Sbjct:    4 ELTNRSRDAINAATNRAVSEGHPDLTPAHLLLALLGGKDNENITDLLAAVDADQAAVRAGT--ERVLAKLPSVTGSTVAPPQPNRELLAVVADASQRAQDLGDDFLSTEHLLIGIAANGGAAGDVLSQQGASAKKLLEAFQKTRG--GRRVTTPDPEGQYKALEKFGTDFTAAARDGKLDPVIGRDQEIRRVVQV 194          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_LISMF (Chaperone protein clpB OS=Listeria monocytogenes serotype 4b (strain F2365) GN=clpB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.567e-15
Identity = 61/200 (30.50%), Postives = 103/200 (51.50%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLP--SQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQ--IGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQ--AGKLDPVIGRDEENRKGVRI 710
            M+  KFT +  + IA A  LA ++ H +    H+   LL++    FA+ + +   E    + +     A+ K+P  S +        S  L +++R A+  QK   D  ++ + LIL +++     I    K+   +  +++  + K+RG  G+KV S + +  ++AL  YGRDLV +  +GKLDPVIGRD E R  +RI
Sbjct:    1 MDLQKFTQQVQQTIADAQNLAIASEHQEIDVAHVFKVLLTESD--FAKRVYDVA-EVDIDALQKTVEDALTKIPVVSGSGVNYGQAMSQALFQLMRDAEKEQKQLDDDFVSTEHLILAVMDQKSNPITMNLKKQHKSKKQIQEAILKIRG--GKKVTSQNAEENYEALTKYGRDLVAEVRSGKLDPVIGRDAEIRNVIRI 195          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_FUSNN (Chaperone protein clpB OS=Fusobacterium nucleatum subsp. nucleatum GN=clpB PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.567e-15
Identity = 53/201 (26.37%), Postives = 102/201 (50.75%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTP-----APDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            MNP++FT  T  AI +A +++         P  LA+ LL   +G+  + I   G      + + + ++  K++ +        + + I        ++ RA+       D+ L+V+ +   ++E+  I   FK  G+++ +    +  +RG   RKV++ + + T++ L+ Y +DLVE A  GK+DP+IGRD E R+ ++I
Sbjct:    1 MNPNQFTENTISAINLAVDISKGNMQQSIKPEALALGLLMQNNGLIPRVIEKMG-----LNLQYIISELEKEMNNYPKVEVKVSNENISLDQKTNSILNRAEKIMNEMEDSFLSVEHIFKAMIEEMPI---FKRFGISLEKYMEVLMNIRG--NRKVDNQNPEATYEVLEKYAKDLVELAREGKIDPIIGRDSEIRRAIQI 191          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_COREF (Chaperone protein clpB OS=Corynebacterium efficiens GN=clpB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 58/195 (29.74%), Postives = 95/195 (48.72%), Query Frame = 3
Query:  147 THKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTL----IKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            T KT+EA+  A + A++ G+    P HL VA+L    G+ A  +  AG +      + +  +A K +     A     A+       +  +  +Q      GD +++ + L+ G+    S   DL K  G     +K+  + +RG +  KV S   +  FQAL+ Y  DL + A  GK+DPVIGRD+E R+ V++
Sbjct:    7 TTKTSEAMQAALQQASANGNPDIRPAHLLVAILDQADGVAAPVLTAAGVD-----PKTILAEAQKLVDGYPKASGSNLANPNFNRDALNALTASQELAGELGDEYVSTEVLLAGIARGKSDAADLLKGKGATYDAIKAAFQSVRGSQ--KVTSQDPEGQFQALEKYSTDLTKLAREGKIDPVIGRDQEIRRVVQV 194          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_BACTN (Chaperone protein clpB OS=Bacteroides thetaiotaomicron GN=clpB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 61/197 (30.96%), Postives = 101/197 (51.27%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLE-DSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            MN + FT K+ EA+  A  L  S G     P H+   ++     +    I    G N  Q A  V  Q ++ LP  +     +   +   +V+++A    K  GD  ++++ ++L LL   S +  + K+AG+    +++ + +LR  +G KV S S +  +Q+L+ Y  +L E A  GKLDPVIGRDEE R+ ++I
Sbjct:    1 MNFNNFTIKSQEAVQEAVNLVQSRGQQAIEPAHILHGVMKVGENV-TNFIFQKLGMNGQQVALVVDKQ-IESLPKVSGGEPYLSRESN--EVLQKATQYSKEMGDEFVSLEHILLALLTVKSTVSTILKDAGMTEKELRNAINELR--KGEKVTSQSSEDNYQSLEKYAINLNEAARSGKLDPVIGRDEEIRRVLQI 191          
The following BLAST results are available for this feature:
BLAST of FC930453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
CLPB_LISMO3.397e-1530.50Chaperone protein clpB OS=Listeria monocytogenes G... [more]
CLPB_CHLPN3.397e-1529.23Chaperone protein clpB OS=Chlamydia pneumoniae GN=... [more]
CLPB_CLOPE4.436e-1526.00Chaperone protein clpB OS=Clostridium perfringens ... [more]
CLPB_PSEAE5.794e-1528.93Chaperone protein clpB OS=Pseudomonas aeruginosa G... [more]
CLPB_CLOAB5.794e-1528.00Chaperone protein clpB OS=Clostridium acetobutylic... [more]
CLPB1_STRAW5.794e-1530.26Chaperone protein clpB 1 OS=Streptomyces avermitil... [more]
CLPB_LISMF7.567e-1530.50Chaperone protein clpB OS=Listeria monocytogenes s... [more]
CLPB_FUSNN7.567e-1526.37Chaperone protein clpB OS=Fusobacterium nucleatum ... [more]
CLPB_COREF1.291e-1429.74Chaperone protein clpB OS=Corynebacterium efficien... [more]
CLPB_BACTN1.291e-1430.96Chaperone protein clpB OS=Bacteroides thetaiotaomi... [more]

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Properties
Property NameValue
Genbank descriptionC34007G02EF PostHarvC1 Citrus clementina cDNA clone C34007G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930453 ID=FC930453; Name=FC930453; organism=Citrus clementina; type=EST; length=712bp
GAGACGAAGAGAAACCAAACACGCAGACGATCGAAGCATACACAAAAGCC
TTAAGAAAAGAGCTATTCATTTCTTCAACCTCCCATCGAGGAAAGTTTCG
TAAGGATTGTATACGCTAAAGAGTACAGATGAATCCTGACAAATTCACCC
ACAAGACCAATGAGGCCATTGCCATGGCTCATGAACTGGCAACAAGCGCT
GGTCATGCGCAATTCACTCCTCTGCATCTTGCAGTTGCGCTGCTATCTGA
CCCCAGTGGCATCTTTGCTCAGGCAATCAACAATGCTGGTGGCGAAAATG
CTGCGCAGTCAGCAGAACCAGTGTTCAATCAAGCTATGAAGAAACTCCCA
TCTCAAACTCCAGCCCCCGATGAAATTCCAGCTAGTACCACACTCATCAA
AGTAATTAGACGTGCCCAAGCCGCTCAAAAAGCGCATGGAGACACCCATT
TAGCTGTTGACCAGTTAATTCTAGGACTTCTTGAGGATTCCCAGATTGGG
GATTTGTTCAAGGAAGCTGGAGTTGCCGTAGCAAGAGTGAAATCCGAGGT
GGAAAAGCTTCGTGGGAAGGAAGGGAGGAAGGTGGAGAGTGCTTCAGGGG
ATACTACTTTCCAAGCTCTCAAGACGTATGGGAGAGACCTTGTCGAACAG
GCAGGAAAGCTTGATCCTGTCATTGGCCGAGATGAAGAAAATAGAAAGGG
TGTTCGAATTCT
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