FC930453

Overview
NameFC930453
Unique NameFC930453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_RHOBA (Chaperone protein clpB OS=Rhodopirellula baltica GN=clpB PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 53/194 (27.32%), Postives = 100/194 (51.55%), Query Frame = 3
Query:  138 DKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLE-DSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVE--QAGKLDPVIGRDEENRKGVRI 710
            DK T +    +A A   ATSAG+A+  PLH+  A ++   GI    +     +      + +    ++KLP       +   S  L   +  +  + ++  D +++ + L++GL   D++  +L    GV+   + + + ++RG    +V   + ++T+QAL+ +G DL +  Q+GKLDPVIGRD E R+ +++
Sbjct:    6 DKLTTQAQNVVAEAQAQATSAGNAEIDPLHVLSAAVNQRDGITTPLLEKINVD--VPKLKSLLTSELEKLP-HASGMGQARVSAKLQAALEASATSAESLKDEYVSTEHLLVGLARTDNKAKNLLSLLGVSDNDLLTAMSQIRG--SARVTDPNAESTYQALEKFGIDLTQLAQSGKLDPVIGRDNEIRRVIQV 194          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLP_TRYBB (Heat shock protein 100 OS=Trypanosoma brucei brucei GN=HSP100 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 60/190 (31.58%), Postives = 96/190 (50.53%), Query Frame = 3
Query:  147 THKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            T+    A++ A E A    +    P HLA+ L  +  G+ ++ +      NA    EP+  + +  LP Q P P  I  S+       R   A +  GD+ +AVD L++GL E  ++  + K A  +   V+  + +LR  +G+KV S   +  +QAL+ Y  DL + A  GKLDPVIGR +E  + +R+
Sbjct:    9 TNAAQTALSDAVESARKHNNGFVDPAHLALVLFKNEDGLASRVLRKL---NAGTVLEPLAAR-VGALPEQRPRPRSITFSSDGGCAQHRRAEANRV-GDSLIAVDHLLIGLFECKEVEAIMKAAHASKKAVEGALLELR--KGKKVTSEFQEENYQALEKYATDLCKLAEEGKLDPVIGRTDEVLRTIRV 191          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_DEIRA (Chaperone protein clpB OS=Deinococcus radiodurans GN=clpB PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 60/196 (30.61%), Postives = 98/196 (50.00%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            MNP++FT  +  AI  A +LA    +   T  H+   LL + +   ++A+  AGG+    +A    +  + KLP    +  ++     L +  ++A       GD+ +A D L+L L  + +   L  E  V++ R  +E  K     G+ V + + +  F AL  YG DL ++A  GK DPVIGRDEE R+ ++I
Sbjct:    1 MNPERFTEASAVAINAAQQLAQENHNQNLTHFHVLRTLLDNDTA--SRALTLAGGD--LNTARAALDAEIAKLPKVQGSDGQLYLDPALNRAFQKADTLAAQLGDSFVAADTLLLALRGEYRGRGLPDE--VSLNRAVTEQRK-----GKTVTNKTSEQQFDALNKYGTDLTQRARDGKFDPVIGRDEEIRRVMQI 185          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_COXBU (Chaperone protein clpB OS=Coxiella burnetii GN=clpB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 62/197 (31.47%), Postives = 92/197 (46.70%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLE-DSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M  DKFT     A+A A  LA    H    P H+   LL    G  A  +  +   N ++  + V N+A+   P       E+  S  L K++       + + D +++ +  I   LE   Q+ D+  EAG     ++  +  LR  +G +V   S +   QAL  Y  DL E+A  GKLDPVIGRDEE R+ V++
Sbjct:    1 MRIDKFTTAFQTALADAQSLAVGRDHQFIEPAHVMKVLLEQTQGTVAPLLEQSK-VNLSRLIDGV-NKAIDSYPQVEGTGGEVHVSRELSKILTLMDKFAQQNKDQYISSEWFIPAALEAKGQLRDVLIEAGADKKAIEKNIMNLR--KGERVTEQSAEDQRQALAKYTIDLTEKAETGKLDPVIGRDEEIRRTVQV 193          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_CHLTR (Chaperone protein clpB OS=Chlamydia trachomatis GN=clpB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 53/195 (27.18%), Postives = 99/195 (50.77%), Query Frame = 3
Query:  138 DKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQ--IGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDL--VEQAGKLDPVIGRDEENRKGVRI 710
            +KF+   +EA+  A ELA ++ H+  T  HL  +LL +P  +F   I +  G     ++    + A+++ P+          S +L +++  A    ++ GD +L+ D L+L     ++       K        +K  + KLR  +G +++S S +   + L+ Y ++L  + + GKLDPVIGRDEE R+ +++
Sbjct:    2 EKFSDAVSEALEKAFELAKNSKHSYVTENHLLKSLLQNPGSLFCLVIKDVHGNLGLLTS--AVDDALRREPTVVEGTAVASPSPSLQQLLLNAHQEARSMGDEYLSGDHLLLAFWRSTKEPFASWRKTVKTTSEALKELITKLR--QGSRMDSPSAEENLKGLEKYCKNLTVLAREGKLDPVIGRDEEIRRTIQV 192          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_CHLMU (Chaperone protein clpB OS=Chlamydia muridarum GN=clpB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 55/195 (28.21%), Postives = 100/195 (51.28%), Query Frame = 3
Query:  138 DKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQ--IGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDL--VEQAGKLDPVIGRDEENRKGVRI 710
            +KF+   +EA+  A ELA  A H+  T  HL  +LL +P  +F   I +  G     ++    + A+ + P+          S +L +++  AQ   ++ GD +L+ D L+L   + ++       K    +   +K  + KLR  +G +++S S +   + L+ Y ++L  + + GKLDPVIGRDEE R+ +++
Sbjct:    2 EKFSDAVSEALEKAFELAKDAKHSYVTENHLLKSLLQNPGSLFCLVIKDVHGNLGLLTS--AVDDALHREPTVVEGAAIPKPSPSLQQLLLNAQEEARSMGDEYLSGDHLLLAFWKTTKEPFASWRKTVKTSPEALKELIIKLR--QGSRMDSPSAEENLKGLEKYCKNLTILAREGKLDPVIGRDEEIRRTIQV 192          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_PROFR (Chaperone protein clpB (Fragment) OS=Propionibacterium freudenreichii subsp. shermanii GN=clpB PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14
Identity = 59/198 (29.80%), Postives = 96/198 (48.48%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPA-STTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLE-DSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            M+ +K T  + +A+  A  LA + G+    P+HL  A+L  P    A  +   G +  A   +   + A+ KLPS + +    P  S  L +V+  A+      GD  ++ + L++ L E DS   ++    GV  A ++      RG   +++ SA  +    AL  Y  DL ++A  GKLDPVIGRD E R+  ++
Sbjct:    1 MDTEKLTTMSRDAVTAAVRLALTKGNPTAEPVHLLHAMLMVPESSVAPLLKAVGAD--AARVDGAASAAIDKLPSSSGSSVAQPQLSGALARVLADAETRADKLGDQFVSTEHLLIALAEVDSDAKNILASNGVTTAALEKAFNDSRGD--KRITSAESEGGESALDKYSIDLTQRAKDGKLDPVIGRDSEIRRVAQV 194          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_PORGI (Chaperone protein clpB OS=Porphyromonas gingivalis GN=clpB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.755e-14
Identity = 60/201 (29.85%), Postives = 103/201 (51.24%), Query Frame = 3
Query:  129 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGI----FAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDS-QIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            MN + +T K+ EA+  A EL    G     P HL  A++     +    FA+   N G      S     ++ ++KLP  +     +   T   +V++ A+ A     D +++++ ++L +L    +   L K+AG     ++S +E+LR  +GR V S S +  + AL+ Y  +L ++A  GKLDPVIGRD+E R+ ++I
Sbjct:    1 MNINNYTIKSQEALQQAVELTRRHGQQAIEPQHLLKAVMDQGESLTDFLFAKMGLNKG------SIATAVDKLIEKLPHVSGGEPYLSHETN--QVLQAAEDAAHRMKDKYVSLEHIVLAILTTRCEASTLLKDAGATEQLLQSAIEELR--KGRNVTSQSAEEQYNALEKYAVNLCQRARDGKLDPVIGRDDEIRRVLQI 191          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_CAMJE (Chaperone protein clpB OS=Campylobacter jejuni GN=clpB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 59/193 (30.57%), Postives = 95/193 (49.22%), Query Frame = 3
Query:  138 DKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            D  T      +  A  LA  + + +  PLHL  AL  D + I  Q +N       A   E + ++  K   S     + I  S  LI  +  A+    A+GD++L+VD  ++   + S I ++  +  + +   + E+E LR   GRK++S + D T  +L  +G DL  +A  GKLDPVIGR+EE  + ++I
Sbjct:    6 DFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALSVDSTSILNQILNKLNISKEALELE-IKSRISKLATSSNVNRENIRFSNELINSLENAKGLMSANGDSYLSVDTWLISESQKSPIKEILAQF-LDLREFQKELESLRA--GRKMDSKTSDETLDSLNKFGIDLTLKASEGKLDPVIGREEEIERLMQI 194          
BLAST of FC930453 vs. ExPASy Swiss-Prot
Match: CLPB_DICNO (Chaperone protein clpB OS=Dichelobacter nodosus GN=clpB PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 56/194 (28.87%), Postives = 94/194 (48.45%), Query Frame = 3
Query:  141 KFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAEPVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQ--IGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEENRKGVRI 710
            KFT +  EA++ A  LA    HA   PLH+  ALL             AGG+  A        QA+++LP       ++  S   ++++       + +GD +++  +L L  + D++  +  L +  G+  A V + ++ +RG  G  V     +    ALK Y  D+ ++   GK+DPVIGRDEE R+ ++I
Sbjct:    9 KFTARFQEALSAAQSLAVGKDHAYIEPLHIFSALLDQEGSSIIAIAQRAGGQIGA--VRQAVMQALERLPRVKNPTGDVNISPESMRLLNLCDKYAQQNGDEYIS-SELFLRAVYDAKGDLEQLLRANGLEKAAVVAAIDAVRG--GEAVTDEYAEDKRGALKKYTLDVTQRPLDGKIDPVIGRDEEIRRAMQI 197          
The following BLAST results are available for this feature:
BLAST of FC930453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
CLPB_RHOBA1.686e-1427.32Chaperone protein clpB OS=Rhodopirellula baltica G... [more]
CLP_TRYBB2.202e-1431.58Heat shock protein 100 OS=Trypanosoma brucei bruce... [more]
CLPB_DEIRA2.202e-1430.61Chaperone protein clpB OS=Deinococcus radiodurans ... [more]
CLPB_COXBU2.202e-1431.47Chaperone protein clpB OS=Coxiella burnetii GN=clp... [more]
CLPB_CHLTR2.202e-1427.18Chaperone protein clpB OS=Chlamydia trachomatis GN... [more]
CLPB_CHLMU2.202e-1428.21Chaperone protein clpB OS=Chlamydia muridarum GN=c... [more]
CLPB_PROFR2.875e-1429.80Chaperone protein clpB (Fragment) OS=Propionibacte... [more]
CLPB_PORGI3.755e-1429.85Chaperone protein clpB OS=Porphyromonas gingivalis... [more]
CLPB_CAMJE4.905e-1430.57Chaperone protein clpB OS=Campylobacter jejuni GN=... [more]
CLPB_DICNO6.406e-1428.87Chaperone protein clpB OS=Dichelobacter nodosus GN... [more]

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Properties
Property NameValue
Genbank descriptionC34007G02EF PostHarvC1 Citrus clementina cDNA clone C34007G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930453 ID=FC930453; Name=FC930453; organism=Citrus clementina; type=EST; length=712bp
GAGACGAAGAGAAACCAAACACGCAGACGATCGAAGCATACACAAAAGCC
TTAAGAAAAGAGCTATTCATTTCTTCAACCTCCCATCGAGGAAAGTTTCG
TAAGGATTGTATACGCTAAAGAGTACAGATGAATCCTGACAAATTCACCC
ACAAGACCAATGAGGCCATTGCCATGGCTCATGAACTGGCAACAAGCGCT
GGTCATGCGCAATTCACTCCTCTGCATCTTGCAGTTGCGCTGCTATCTGA
CCCCAGTGGCATCTTTGCTCAGGCAATCAACAATGCTGGTGGCGAAAATG
CTGCGCAGTCAGCAGAACCAGTGTTCAATCAAGCTATGAAGAAACTCCCA
TCTCAAACTCCAGCCCCCGATGAAATTCCAGCTAGTACCACACTCATCAA
AGTAATTAGACGTGCCCAAGCCGCTCAAAAAGCGCATGGAGACACCCATT
TAGCTGTTGACCAGTTAATTCTAGGACTTCTTGAGGATTCCCAGATTGGG
GATTTGTTCAAGGAAGCTGGAGTTGCCGTAGCAAGAGTGAAATCCGAGGT
GGAAAAGCTTCGTGGGAAGGAAGGGAGGAAGGTGGAGAGTGCTTCAGGGG
ATACTACTTTCCAAGCTCTCAAGACGTATGGGAGAGACCTTGTCGAACAG
GCAGGAAAGCTTGATCCTGTCATTGGCCGAGATGAAGAAAATAGAAAGGG
TGTTCGAATTCT
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