FC930454

Overview
NameFC930454
Unique NameFC930454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15114 contig Ccv1_Contig15114:12..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930454 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.856e-38
Identity = 80/158 (50.63%), Postives = 110/158 (69.62%), Query Frame = 2
Query:  188 LQPIKSSRPNNLSISASA---SPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYEL-SKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPKRQLFN 649
            + P+KS + +N +++  A    P  +L   KF PIKE  V R M RRY  DM   A +D    GAGSAGLSCAY L +  P+++I I+E +V+PGGG WL GQL SAMV RKPA  FLD++G+ Y+++ ++VV+KHAALFTST++SK+LA P  ++FN
Sbjct:   24 MDPLKSKQQSNATVNKPAFKPEPAVNLTPIKFAPIKEHQVQRAMVRRYFQDMEERAISDVIIVGAGSAGLSCAYALGTARPDLKITILESNVAPGGGCWLGGQLMSAMVCRKPADEFLDQVGVPYEDEGNFVVVKHAALFTSTVLSKVLAMPNVKMFN 181          
BLAST of FC930454 vs. ExPASy Swiss-Prot
Match: THI4_THEMA (Putative thiazole biosynthetic enzyme OS=Thermotoga maritima GN=TM_0787 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12
Identity = 33/99 (33.33%), Postives = 61/99 (61.62%), Query Frame = 2
Query:  281 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVI 577
            +++ ++SR +  RY   +    + D    GAG +GL+ AYEL+KN   ++A+ E+  +PGGG W  G +F+ +V+ K    FL E+ I+Y+ ++ ++V+
Sbjct:    3 MRDVLISRLIVERYFEKLRNSLELDVAIVGAGPSGLTAAYELAKN-GFRVAVFEERNTPGGGIWGGGMMFNEIVLEKELENFLKEVEIEYEVKEDHIVV 100          
BLAST of FC930454 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.481e-11
Identity = 38/114 (33.33%), Postives = 62/114 (54.39%), Query Frame = 2
Query:  281 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLL 622
            ++E  ++R +   Y  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W  G  F+ +VV+  A   LDE GI Y+E +    +  A    +TI SK++
Sbjct:    2 LREVTITRAIVESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQDEAREILDEFGIRYEEFEKGYYVADAIEVATTIASKVV 114          
BLAST of FC930454 vs. ExPASy Swiss-Prot
Match: THI4_METTH (Putative thiazole biosynthetic enzyme OS=Methanobacterium thermoautotrophicum GN=MTH_1620 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.526e-11
Identity = 38/116 (32.76%), Postives = 62/116 (53.45%), Query Frame = 2
Query:  269 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSK 616
            K D IK   +SR +   YM D++ Y + D    G G +GL+  Y L++   +++A+ E+ +S GGG W  G +F+ +VV+      LDE GI  +  D    +  +   TST+ S+
Sbjct:    2 KLDDIK---ISRAIVEGYMEDLLDYMEMDVAIGGGGPSGLTAGYYLAR-AGLKVALFERKLSIGGGMWGGGMMFNKIVVQDEGREILDEFGIRSEPYDEGYHVADSVEATSTLCSR 113          
BLAST of FC930454 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.309e-11
Identity = 37/112 (33.04%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  281 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSK 616
            +K+ ++SR +   Y  D++   + D    GAG +G+   Y L+K    ++AI E+ +S GGG W  G  F+ +VV++ A   LDE  I Y+E +    +  A    +TI SK
Sbjct:    2 LKDVVISRAIVESYFKDLLNNLELDVAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKIVVQEEAKEILDEFDIRYEEFEKGYYVADAIEVATTIASK 112          
BLAST of FC930454 vs. ExPASy Swiss-Prot
Match: THI4_HALSA (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarium GN=VNG_2604G PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.309e-11
Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 2
Query:  272 FDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGI--DYDEQDSYVVIKHA 586
            F    E+ V+R +TR++  + +   +TD    G G +GL  A EL+   ++ + IIE++   GGG WL G L + + VR PA   LD+LG+  +YDE++  + +  A
Sbjct:    6 FADANEAEVTRAITRQWTDEFLDDTETDVIIVGGGPSGLMAAKELADR-DVDVTIIEKNNYLGGGFWLGGFLMNKLTVRSPAEAVLDDLGVPYEYDEENDGLAVADA 111          
BLAST of FC930454 vs. ExPASy Swiss-Prot
Match: THI4_HALS3 (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE4651F PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.309e-11
Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 2
Query:  272 FDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGI--DYDEQDSYVVIKHA 586
            F    E+ V+R +TR++  + +   +TD    G G +GL  A EL+   ++ + IIE++   GGG WL G L + + VR PA   LD+LG+  +YDE++  + +  A
Sbjct:    6 FADANEAEVTRAITRQWTDEFLDDTETDVIIVGGGPSGLMAAKELADR-DVDVTIIEKNNYLGGGFWLGGFLMNKLTVRSPAEAVLDDLGVPYEYDEENDGLAVADA 111          
BLAST of FC930454 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.628e-11
Identity = 38/112 (33.93%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  281 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSK 616
            ++E  +SR +   Y  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W  G  F+ +VV++ A   LDE  I Y+E +    +  A    +TI SK
Sbjct:    2 LREVTISRAIIESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQEEAREILDEFDIRYEEFEKGYYVADAIEVATTIASK 112          
The following BLAST results are available for this feature:
BLAST of FC930454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
THI4_UROFA1.856e-3850.63Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI4_THEMA1.340e-1233.33Putative thiazole biosynthetic enzyme OS=Thermotog... [more]
THI4_PYRHO1.481e-1133.33Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_METTH2.526e-1132.76Putative thiazole biosynthetic enzyme OS=Methanoba... [more]
THI4_PYRFU4.309e-1133.04Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_HALSA4.309e-1134.58Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_HALS34.309e-1134.58Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_PYRAB5.628e-1133.93Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]

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Properties
Property NameValue
Genbank descriptionC34007G03EF PostHarvC1 Citrus clementina cDNA clone C34007G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930454 ID=FC930454; Name=FC930454; organism=Citrus clementina; type=EST; length=651bp
TCATCACTGCTGCAAATCAAATTACTTCTCATTATCAAACTTCTAAGCAG
CAGGGGAAGGAGGGGTAAAAAAAAAAAACATGGCAGCCATGGCTTCTACA
GCTTTCGCTCCTTCAGTTTCGTCTACCACCAATAAGCTCTTTGACTCATC
CTTTCATGGGGCTCCCATGTCACCTTCTCTTCTACGTCTTCAACCCATCA
AATCTTCTCGTCCCAACAACTTGTCCATTTCTGCTTCTGCTTCTCCTCCT
TATGACTTGAACACTTTCAAGTTTGACCCCATCAAAGAATCCATTGTTTC
TCGTGAAATGACGCGCAGGTACATGACGGACATGATCACTTATGCTGACA
CTGATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTTGTGCTTAT
GAGCTCAGCAAAAACCCCAACATTCAGATTGCTATTATCGAACAGTCTGT
TAGCCCCGGCGGTGGCGCGTGGCTCAGTGGACAGCTCTTCTCTGCCATGG
TTGTGCGCAAACCAGCCCACATCTTCCTTGACGAGCTTGGCATCGACTAC
GATGAGCAAGACAGCTATGTTGTGATCAAGCATGCAGCGCTGTTCACCTC
CACTATAATGAGCAAGCTCCTGGCCCGCCCCAAACGTCAGCTCTTTAATG
C
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