FC930463

Overview
NameFC930463
Unique NameFC930463
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD_RICBR (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=sucD PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.611e-60
Identity = 116/166 (69.88%), Postives = 131/166 (78.92%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            A+ V+K T+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGG  HL LP++N+V EAKA+T ANASVIYVPPPF            +++VVCITEGIP  DMVRVK AL   S+TRLIGPNCPGII P ECKIGIMPG+IH+ G +GIVSRSGTLTYEAV QTT
Sbjct:    2 AILVNKKTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGKTHLDLPIYNTVHEAKAKTGANASVIYVPPPFAADSILEAIDAGIEIVVCITEGIPVLDMVRVKRAL-VGSRTRLIGPNCPGIITPDECKIGIMPGHIHRKGSIGIVSRSGTLTYEAVAQTT 166          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD_RICTY (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia typhi GN=sucD PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.692e-59
Identity = 115/166 (69.28%), Postives = 130/166 (78.31%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+N+V EAKA+T ANASVIYVPP F            +++VVCITEGIP  DMV+VK AL   SKTRLIGPNCPG+I PGECKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT
Sbjct:    2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLNLPVYNTVHEAKAKTDANASVIYVPPGFAADSILEAIDAKIEVVVCITEGIPVLDMVKVKRAL-IGSKTRLIGPNCPGVITPGECKIGIMPGHIHKTGIIGIVSRSGTLTYEAVAQTT 166          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD_RICFE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia felis GN=sucD PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.210e-59
Identity = 115/166 (69.28%), Postives = 130/166 (78.31%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+N+V EAKA+T ANASVIYVPP F            +++VVCITEGIP  DMV+VK AL   SKTRLIGPNCPG+I PGECKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT
Sbjct:    2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLDLPVYNTVHEAKAKTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMVKVKRAL-VGSKTRLIGPNCPGVITPGECKIGIMPGHIHKRGTIGIVSRSGTLTYEAVAQTT 166          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD_COXBU (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Coxiella burnetii GN=sucD PE=3 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 2.210e-59
Identity = 110/166 (66.27%), Postives = 129/166 (77.71%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            ++ +DK TRV+CQG TGK GTFH+EQAIEYGT+MVGGVTP KGG  HLGLP+FNSV EA  ET A+A++I+VP PF            + LVVCITEGIP  DM+ VKA L +    R+IGPNCPG+I PGECKIGIMPG+IH+ G+VGIVSRSGTLTYEAV QTT
Sbjct:    2 SILIDKETRVLCQGFTGKQGTFHSEQAIEYGTQMVGGVTPGKGGQSHLGLPIFNSVHEAVEETSADATMIFVPAPFCKDSIIEAVDAGVRLVVCITEGIPVLDMLEVKAYLRQHPDVRMIGPNCPGVITPGECKIGIMPGHIHQRGKVGIVSRSGTLTYEAVNQTT 167          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD_RICPR (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia prowazekii GN=sucD PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.770e-59
Identity = 114/166 (68.67%), Postives = 130/166 (78.31%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+N+V EAKA+T ANASVIYVPP F            +++VVCITEGIP  DM++VK AL   SKTRLIGPNCPG+I PGECKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT
Sbjct:    2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLNLPVYNTVHEAKAKTGANASVIYVPPGFAADSILEAIDAKIEVVVCITEGIPVLDMIKVKRAL-IGSKTRLIGPNCPGVITPGECKIGIMPGHIHKIGDIGIVSRSGTLTYEAVAQTT 166          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD_RICCN (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia conorii GN=sucD PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.924e-59
Identity = 115/166 (69.28%), Postives = 130/166 (78.31%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+N+V EAKA+T ANASVIYVPP F            +++VVCITEGIP  DMV+VK AL   SKTRLIGPNCPG+I PGECKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT
Sbjct:    2 AILINKKTQVICQGFTGLQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLDLPVYNTVHEAKAKTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMVKVKRAL-VGSKTRLIGPNCPGVITPGECKIGIMPGHIHKRGTIGIVSRSGTLTYEAVAQTT 166          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD_ECOLI (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli (strain K12) GN=sucD PE=1 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.097e-58
Identity = 111/166 (66.87%), Postives = 128/166 (77.11%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            ++ +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA A T A ASVIYVP PF            + L++ ITEGIP  DM+ VK  L+ ++  R+IGPNCPG+I PGECKIGI PG+IHKPG+VGIVSRSGTLTYEAV QTT
Sbjct:    2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTT 166          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD_ECOL6 (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli O6 GN=sucD PE=3 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.097e-58
Identity = 111/166 (66.87%), Postives = 128/166 (77.11%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            ++ +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA A T A ASVIYVP PF            + L++ ITEGIP  DM+ VK  L+ ++  R+IGPNCPG+I PGECKIGI PG+IHKPG+VGIVSRSGTLTYEAV QTT
Sbjct:    2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTT 166          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD_ECO57 (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli O157:H7 GN=sucD PE=3 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.097e-58
Identity = 111/166 (66.87%), Postives = 128/166 (77.11%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            ++ +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA A T A ASVIYVP PF            + L++ ITEGIP  DM+ VK  L+ ++  R+IGPNCPG+I PGECKIGI PG+IHKPG+VGIVSRSGTLTYEAV QTT
Sbjct:    2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTT 166          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCA_SCHPO (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC16E8.17c PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.702e-57
Identity = 111/201 (55.22%), Postives = 138/201 (68.66%), Query Frame = 2
Query:   98 RPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            +  T    S  R SSS+      +N  S    + P + ++ +T+VI QG TGK GTFH + A++YGTK+VGG  PKK GT HLG PVF ++ EA  ETKA+AS ++VPPP             + L+V ITEGIPQHDM+RV   L  QSK+RL+GPNCPGII+PG+CKIGIMP +IHKPG +GIVSRSGTLTYEAV QTT
Sbjct:    3 KTQTTLLTSLRRFSSSS----QLKNSKSLYEQTIPNLMINSDTKVIFQGFTGKQGTFHAQHAMDYGTKVVGGTNPKKAGTTHLGKPVFGTIEEAMKETKADASAVFVPPPLAAGAIEEAIAAEVPLIVAITEGIPQHDMLRVSDILKTQSKSRLVGPNCPGIIRPGQCKIGIMPSHIHKPGCIGIVSRSGTLTYEAVNQTT 199          
The following BLAST results are available for this feature:
BLAST of FC930463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SUCD_RICBR2.611e-6069.88Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICTY1.692e-5969.28Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICFE2.210e-5969.28Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_COXBU2.210e-5966.27Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICPR3.770e-5968.67Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICCN4.924e-5969.28Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_ECOLI1.097e-5866.87Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_ECOL61.097e-5866.87Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_ECO571.097e-5866.87Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCA_SCHPO2.702e-5755.22Probable succinyl-CoA ligase [GDP-forming] subunit... [more]

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Properties
Property NameValue
Genbank descriptionC34007G12EF PostHarvC1 Citrus clementina cDNA clone C34007G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930463 ID=FC930463; Name=FC930463; organism=Citrus clementina; type=EST; length=704bp
GAACTCGAGGGAGAAAATCAGCGAATCAGATTAAAGTGAAGTGAATCAAA
TGGCTCGCCAAGCCTTGGCCAAGCTGATCGGCTCGATCGGATCTCGCAGA
CCGTCTACTGCTTCTTCCGTTTCACATTACAGATTATCATCGTCGGCGGC
GCCGGCGGCCCACTCTCGAAATTATGGGTCGTCGGCGGCGGCGTCTCATC
CGGCAGTTTTCGTCGACAAAAACACTCGAGTTATATGCCAAGGCATCACC
GGAAAAAACGGCACGTTCCACACCGAACAAGCCATCGAATACGGCACCAA
AATGGTGGGTGGCGTGACGCCGAAGAAGGGTGGGACTGAGCACTTGGGAC
TTCCTGTATTCAACTCGGTTGCTGAAGCTAAGGCTGAAACGAAGGCTAAT
GCTTCTGTCATTTATGTTCCTCCGCCATTTGCTGCTGCTGCTATCATGGA
GGCTATGGAGGCTGAGTTGGATCTTGTCGTCTGTATCACCGAAGGAATCC
CTCAACATGATATGGTGCGAGTGAAAGCTGCTCTAAACAGGCAATCTAAA
ACTCGGCTGATTGGTCCCAACTGCCCTGGTATCATCAAACCTGGAGAATG
TAAGATTGGCATTATGCCTGGGTATATTCACAAACCTGGGCGGGTTGGAA
TTGTTTCTCGATCTGGTACCTTGACCTACGAAGCAGTTTTTCAAACAACT
GTAG
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