FC930464

Overview
NameFC930464
Unique NameFC930464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15157 contig Ccv1_Contig15157:1..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930464 vs. ExPASy Swiss-Prot
Match: IKU2_ARATH (Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 3 
Query:    3 SKDIVNWVYS--KMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPCSVTNIVVKKVGESS 248
            + DIV WV+S  K  +R+ M+ ++D +I +  KEDALKVL IA+ CT+K P  RP M+ VV MLE+ EP    N      GES+
Sbjct:  900 NNDIVMWVWSVSKETNREMMMKLIDTSIEDEYKEDALKVLTIALLCTDKSPQARPFMKSVVSMLEKIEPSYNKNSGEASYGESA 983
[Close]
BLAST of FC930464 vs. ExPASy Swiss-Prot
Match: PIP_MYCGE (Putative proline iminopeptidase OS=Mycoplasma genitalium GN=pip PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:  466 GILKVSDIHTIYWE*SGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKS 648
            G L V D H +Y+   GNP G PV+++HGGPG GT     ++FD +   IIL DQRG GKS
Sbjct:    9 GYLNVGDNHQLYYWTQGNPNGKPVLYIHGGPGSGTDEGCLKYFDLETTWIILLDQRGCGKS 69
The following BLAST results are available for this feature:
BLAST of FC930464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
IKU2_ARATH2.204e-1146.43Receptor-like protein kinase HAIKU2 OS=Arabidopsis... [more]
PIP_MYCGE8.446e-1150.82Putative proline iminopeptidase OS=Mycoplasma geni... [more]

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Properties
Property NameValue
Genbank descriptionC34007H01EF PostHarvC1 Citrus clementina cDNA clone C34007H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930464 ID=FC930464; Name=FC930464; organism=Citrus clementina; type=EST; length=700bp
ACAGCAAAGATATAGTGAATTGGGTATACAGCAAAATGGACAGCAGAGAT
AGCATGCTTACTGTTGTGGACCCAAACATCTCAGAGATTCTAAAGGAAGA
TGCTCTCAAAGTTTTGAGAATTGCAATTCACTGCACAAACAAACTCCCAG
CTTTTAGACCATCAATGAGGGTTGTAGTCCAAATGCTAGAAGAAGCTGAG
CCTTGTTCAGTCACCAACATTGTTGTTAAGAAAGTTGGAGAAAGTAGTCC
AAGTTTTTCAAGGCACTACAACTCAACATAAATTTGAAGGGTTCCTCCCT
TCATCCCATCAGAATTTCACTCTCGCAGGGAGGAAGGATTTAGTAATACG
TGCACAAAATTTTGGGGTTAAGAGTGAGCCAAAGCTCATTGATATGATGG
AATCAGGAAAGGAATTACCAGAATTGAATACGAATCTTTATCCTTATGTA
GAGCCATACAGTACAGGCATTTTGAAGGTTTCTGATATTCACACAATCTA
CTGGGAGTAGTCTGGAAACCCTACCGGGCATCCTGTTGTGTTTCTTCATG
GAGGTCCAGGAGGAGGCACTACACCAAGTAATCGAAGATTCTTTGATCCC
GATTTTTACCGTATCATTTTATTTGATCAGCGAGGTGCAGGAAAAAGTAC
CCCTCATGCTTGCTTGGATCAAACACCACATGGGATCTCATTGATGACAT
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