FC930476

Overview
NameFC930476
Unique NameFC930476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSI (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.226e-78
Identity = 143/235 (60.85%), Postives = 172/235 (73.19%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQ--TEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHG-ANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            ++NHGI  E MD VE++TK HY++  EQRF E  +    EG     +   +DWESTF+VRHLP+S I ++PDLD++YR++M                          GYL K F G A  PTFGTKVS+YPPCP+PDL+KGLRAHTDAGGIILLFQDD V GLQLLKDG+W+DVPP+RHSIVVNLGDQ+EVITNG+YKSV HRV++QTDG  R S+ASFYNPGSDAVI PAPAL+
Sbjct:   39 ILNHGISTELMDEVEKMTKDHYKRVREQRFLEFASKTLKEGCDDVNKAEKLDWESTFFVRHLPESNIADIPDLDDDYRRLMKRFAAELETLAERLLDLLCENLGLEKGYLTKAFRGPAGAPTFGTKVSSYPPCPRPDLVKGLRAHTDAGGIILLFQDDSVGGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVITNGRYKSVMHRVVAQTDG-NRMSIASFYNPGSDAVISPAPALV 272          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSJ (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.731e-78
Identity = 142/235 (60.43%), Postives = 173/235 (73.62%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQ--TEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHG-ANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            ++NHGI  E MD VE++TK HY++  EQRF E  +    EG     +   +DWESTF+VRHLP+S I ++PDLD++YR++M                          GYL K F G A  PTFGTKVS+YPPCP+PDL++GLRAHTDAGGIILLFQDD+V GLQLLKDG+W+DVPP+RHSIVVNLGDQ+EVITNG+YKSV HRV++QTDG  R S+ASFYNPGSDAVI PAPAL+
Sbjct:   39 ILNHGISTELMDEVEKMTKDHYKRVREQRFLEFASKTLKEGCDDVNKAEKLDWESTFFVRHLPESNIADIPDLDDDYRRLMKRFAAELETLAERLLDLLCENLGLEKGYLTKAFRGPAGAPTFGTKVSSYPPCPRPDLVEGLRAHTDAGGIILLFQDDRVGGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVITNGRYKSVIHRVVAQTDG-NRMSIASFYNPGSDAVISPAPALV 272          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: ACCO2_DORSP (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Doritaenopsis sp. GN=ACO2 PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 7.945e-78
Identity = 147/235 (62.55%), Postives = 178/235 (75.74%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQT-EVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANG--PTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            L+NHGI  E M+ VE + K HYR+  EQRFKE  AS+ L+ ++  + +++DWESTF++RHLP S I+++PDLD++ R  M                          GYLK+VF G +   PTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKD +WI+VPPLR+SIVVN+GDQ+EVITNGKYKSV HRV++QTDG  R S+ASFYNPGSDAVI+PAPAL+
Sbjct:   38 LLNHGISHELMNRVEAVNKEHYRRFREQRFKEF-ASKTLDSVENVDPDNLDWESTFFLRHLPTSNISQIPDLDDDCRATMKEFARELEKLAERLLDLLCEDLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDREWIEVPPLRYSIVVNIGDQLEVITNGKYKSVLHRVVAQTDG-NRMSIASFYNPGSDAVIFPAPALV 270          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 4.512e-73
Identity = 142/238 (59.66%), Postives = 168/238 (70.59%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYR----KCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANG--PTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            L+NHGI  E  +  E + K HYR    +  EQRFKE  A     G   + +++DWESTF++RHLP S I++VPDLDE+    M                          GYLK+VF G +   PTFGTKVSNYPPCPKP+LIKGLRAHTDAGGIILLFQDD VSGLQLLKD +WIDVPP+RHSIVVN+GDQ+EVITNGKYKSV HRV++QT+G  R S+ASFYNPGSDAVI+PAP L+
Sbjct:   28 LLNHGISHEPNEQSETVNKEHYREHYRRFREQRFKEFAAKTLDSGENVDGDNLDWESTFFLRHLPTSNISQVPDLDEDCGSTMKEFALGLEKLAERLLDLLCENLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDTVSGLQLLKDEEWIDVPPMRHSIVVNIGDQLEVITNGKYKSVMHRVVAQTNG-NRMSIASFYNPGSDAVIFPAPELV 264          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.256e-47
Identity = 105/235 (44.68%), Postives = 143/235 (60.85%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQRFK-----ELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHG--ANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPA 686
            LVNHGI  E ++ V++++   Y K  E+RF+     +L+ +   EG    ++++DWE  F ++       NE P    ++ + M                          G +KK F G   + P FGTKVS+YPPCP+ DL+KGLRAHTDAGG+ILLFQDD+V GLQ+LKDG+WIDV PL  +IV+N GDQIEV++NG+YKS  HRV++ + G  R S+ASFYNP   A I PA
Sbjct:   35 LVNHGIPVELLERVKKVSSECY-KLREERFEGSKPVQLLDTLVKEGDGQRLDNVDWEDVFVLQD-----DNEWPSNPPDFEETMKEYREEIRKLAEKMMEVMDENLGFEKGCIKKAFSGDGQHPPFFGTKVSHYPPCPRLDLVKGLRAHTDAGGVILLFQDDQVGGLQMLKDGRWIDVQPLADAIVINTGDQIEVLSNGRYKSAWHRVLATSHG-NRRSIASFYNPSLKATIAPA 262          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.680e-27
Identity = 74/239 (30.96%), Postives = 123/239 (51.46%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQRFKELVASRALEG-----IQTEVNDMDWESTFY--VRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            LVNHGI   F+D V+   +  +   ME++ K       +EG     + +E   +DW   F+  V+ +     +  P L   +R  +                            L+K+F   +      +++ YPPCP+PD + GL  H+D+ G+ +L Q + V GLQ+ KDG+W+ V PL ++ +VN+GD +E+ITNG Y+S+EHR +  ++ E R S+A+F+N G    + PA +L+
Sbjct:   86 LVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQ-SMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKE-RLSIATFHNVGMYKEVGPAKSLV 322          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: FLS_PETHY (Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.592e-23
Identity = 79/250 (31.60%), Postives = 120/250 (48.00%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQRFKELVA----SRALEG----IQTEVNDMD-WESTFYVRHLPQSTIN---------EVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            L+NHGI  E +  ++++ K  +   + Q  KEL+A    S  +EG    +Q EV     W    + +  P S +N            + +EEY K M                          G+      G +   +  K++ YPPCP+PDL  G+ AHTD   I +L  ++ V GLQ+ KDG W DV  + ++++V++GDQ+E+++NGKYKSV HR     D + R S   F  P S+  + P P LL
Sbjct:   84 LINHGIPDEAIADLQKVGKEFFEH-VPQEEKELIAKTPGSNDIEGYGTSLQKEVEGKKGWVDHLFHKIWPPSAVNYRYWPKNPPSYREANEEYGKRMREVVDRIFKSLSLGLGLE--------GHEMIEAAGGDEIVYLLKINYYPPCPRPDLALGVVAHTDMSYITILVPNE-VQGLQVFKDGHWYDVKYIPNALIVHIGDQVEILSNGKYKSVYHRTTVNKD-KTRMSWPVFLEPPSEHEVGPIPKLL 322          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: FLS_CITUN (Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 70/241 (29.05%), Postives = 116/241 (48.13%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQR--FKELVASRALEGIQTEVND-----MDWESTFYVRHLPQSTINEV--PDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            + NHGI  + +  ++ + K  +    E++  +     ++ ++G  T++         W    + R  P S+IN    P     YR V                           G LK+   G +   +  K++ YPPCP+PDL  G+ AHTD   + +L  ++ V GLQ+ KD +WID   + +++V+++GDQIE+++NGKYK+V HR     D + R S   F  P +D V+ P P L+
Sbjct:   72 VTNHGIPSDLICKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPKNPPSYRAVNEEYAKYMREVVDKLFTYLSLGLGVEGGVLKEAA-GGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVNKD-KTRMSWPVFLEPPADTVVGPLPQLV 309          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: FLS_MALDO (Flavonol synthase/flavanone 3-hydroxylase OS=Malus domestica GN=FLS PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.183e-22
Identity = 74/245 (30.20%), Postives = 117/245 (47.76%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQR--FKELVASRALEGIQT----EVNDMD-----WESTFYVRHLPQSTINEV--PDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            +VNH I  E +  ++ + K  +    E++  + +   S ++EG  T    E+++ D     W    + +  P S +N    P     YR+                              LKK   G N   +  K++ YPPCP+PDL  G+ AHTD   + +L  +D V GLQ  KDG+W DV  + +++V+++GDQ+E+++NGKY SV HR     D + R S   F  P +D V+ P P L+
Sbjct:   70 IVNHDIPSEVISKLQAVGKEFFELPQEEKEAYAKPPDSASIEGYGTKLFKEISEGDTTKKGWVDNLFNKIWPPSVVNYQFWPKNPPSYREANEEYAKHLHNVVEKLFRLLSLGLGLEGQELKKAAGGDN-LEYLLKINYYPPCPRPDLALGVVAHTDMSTVTILVPND-VQGLQACKDGRWYDVKYIPNALVIHIGDQMEIMSNGKYTSVLHRTTVNKD-KTRISWPVFLEPPADHVVGPHPQLV 311          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: FLS_SOLTU (Flavonol synthase/flavanone 3-hydroxylase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.055e-21
Identity = 75/250 (30.00%), Postives = 120/250 (48.00%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQRFKELVASR----ALEGIQTEVNDMDWESTFYVRHL-----PQSTIN---------EVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            ++NHGI  E ++ ++++ K  + + + Q  KEL+A +    +LEG  T +         +V HL     P S IN            + +EEY K +                          G+      G+    +  K++ YPPCP+PDL  G+ AHTD   I LL  ++    +Q+ KDG W DV  + ++I+V++GDQ+E+++NGKYKSV HR  +    + R S   F  P S+  + P P L+
Sbjct:   88 VINHGIPDEVIENLQKVGKEFFEE-VPQEEKELIAKKPGAQSLEGYGTSLQKEIEGKKGWVDHLFHKIWPPSAINYRYWPKNPPSYREANEEYAKWLRKVADGIFRSLSLGLGLE--------GHEMMEAAGSEDIVYMLKINYYPPCPRPDLALGVVAHTDMSYITLLVPNE----VQVFKDGHWYDVNYIPNAIIVHIGDQVEILSNGKYKSVYHRT-TVNKYKTRMSWPVFLEPSSEHEVGPIPNLI 323          
The following BLAST results are available for this feature:
BLAST of FC930476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
ACCO1_ORYSI1.226e-7860.851-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO1_ORYSJ2.731e-7860.431-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO2_DORSP7.945e-7862.551-aminocyclopropane-1-carboxylate oxidase 2 OS=Dor... [more]
ACCO_DENCR4.512e-7359.661-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
ACCO_MUSAC3.256e-4744.681-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]
SRG1_ARATH1.680e-2730.96Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
FLS_PETHY5.592e-2331.60Flavonol synthase/flavanone 3-hydroxylase OS=Petun... [more]
FLS_CITUN2.775e-2229.05Flavonol synthase/flavanone 3-hydroxylase OS=Citru... [more]
FLS_MALDO6.183e-2230.20Flavonol synthase/flavanone 3-hydroxylase OS=Malus... [more]
FLS_SOLTU1.055e-2130.00Flavonol synthase/flavanone 3-hydroxylase OS=Solan... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34008A01EF PostHarvC1 Citrus clementina cDNA clone C34008A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930476 ID=FC930476; Name=FC930476; organism=Citrus clementina; type=EST; length=698bp
AGCTGGTGAATCATGGAATTCAGCCGGAGTTTATGGACACAGTGGAGAGA
TTGACCAAGGCGCATTACAGAAAATGTATGGAGCAAAGATTCAAGGAGCT
TGTTGCAAGCAGGGCACTTGAAGGTATCCAAACCGAGGTCAATGACATGG
ACTGGGAAAGCACTTTCTATGTGCGTCACCTCCCTCAGTCGACCATCAAT
GAAGTCCCAGATCTTGATGAGGAATACAGGAAGGTGATGAAGGAATTTGC
ATTGAAATTGGAGAAATTAGCAGAGGAGCTATTGGACTTGTTATGCGAGA
ATCTTGGATTAGAGAAGGGGTACTTGAAAAAGGTCTTTCATGGGGCAAAC
GGACCAACCTTTGGTACCAAAGTTAGCAACTACCCACCATGCCCCAAGCC
AGATTTGATCAAGGGTCTCCGGGCTCACACCGACGCCGGCGGCATCATCT
TGCTCTTCCAGGATGACAAAGTCAGTGGCCTTCAGCTTCTTAAAGATGGC
CAGTGGATTGATGTGCCCCCATTGCGCCACTCCATTGTTGTCAACCTCGG
TGACCAAATTGAGGTGATCACCAATGGAAAGTACAAGAGTGTGGAGCACA
GAGTGATTTCTCAAACCGACGGCGAGGGCCGGACGTCCCTAGCTTCATTC
TACAATCCTGGAAGTGATGCTGTGATCTATCCAGCACCAGCATTGCTT
back to top