FC930478

Overview
NameFC930478
Unique NameFC930478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_RUTMC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.204e-22
Identity = 70/225 (31.11%), Postives = 116/225 (51.56%), Query Frame = 1
Query:    1 GEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKII 675
            G+A    +SA+ AV+ L       D+++    I     K    I  GD ++  N+RADR   + +A   E+   F R  F   ++  + +Y  +  LP  Y  S  +++   G+YL + G+     +ET K+ HVTFF NG     F  N E+ + IPS    T+++QP+M A E+ +   ++I S+++  +  N  N+DMVGH+G + AT+ A +  D  + II
Sbjct:  210 GKAKFLAQSALHAVE-LAYARGETDEFIQSTSI-----KIPISIKKGDVLIFMNYRADRARQITRAFTDENLQGFSRGTFVPTQFICLTEYKKDFNLPVAYPSS--KLNNVLGKYLSNLGMTQLRIAETEKYAHVTFFLNGGVEQAF--NGEDRILIPSPDVATYDLQPEMSAFELTDALIESIESQKYDLIICNFANTDMVGHSGKLNATIKAVETIDSCLGII 424          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_EHRCR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ehrlichia chaffeensis (strain Arkansas) GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.204e-22
Identity = 66/204 (32.35%), Postives = 107/204 (52.45%), Query Frame = 1
Query:   73 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIXC 684
            D+++ P VI D NG     +   D  +  NFR+DR + + K +   D    + +        GM++Y   + +P   L     I  T GE + ++ +     +ET K+ HVTFF+NG R   F++  E+ + IPS S  T+N+ P+M A E+     + I  +++  + +N  N+DMVGHTG+IEAT  A  A D+ +  I+ C
Sbjct:  227 DEFILPCVIGDYNG-----MNPQDGFIMTNFRSDRAIQIIKMI-IGDIKTDNHITLENT--IGMVKYSESINIPC--LFPNNNITNTLGEVIANHKLHQLRIAETEKYAHVTFFFNGGREDTFEN--EDRIIIPSPSVTTYNLMPEMSAKEVTNTVIERIKLQKYSLIILNYANADMVGHTGNIEATKQAITALDQCLNKILNC 418          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_CAMJR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Campylobacter jejuni (strain RM1221) GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.572e-22
Identity = 72/224 (32.14%), Postives = 116/224 (51.79%), Query Frame = 1
Query:   13 HKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIXC 684
            +K  + +E ++K  ++ N  D+++      +EN K +    + D ++  NFR DRM  L + L  +DF +F+R +  +     M  YD + KLP   L    +I+ T  + +   G+     +ET K+ HVTFF+NG +    ++  E  V IPS    T++ +P+M A E+ +  KK I  +    + VN  N DMVGHTGD  A + A +A D  +  II C
Sbjct:  203 YKVPNLLEYLQKSYDE-NVTDEFIK--AAQNENYKGMR---EEDGIIFINFRNDRMKQLVEVLNSKDFKEFEREKIFE-NLLTMSVYDDKFKLP--VLFEKEKIENTLAQVISKAGLSQLHTAETEKYAHVTFFFNGGKEELLEN--ETRVLIPSPKVKTYDEKPQMSAFEVCDAVKKGI-EKGEDFIVVNFANGDMVGHTGDFNAAIKAVEAVDTCLGEIIEC 414          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_HALMA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Haloarcula marismortui GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 76/220 (34.55%), Postives = 106/220 (48.18%), Query Frame = 1
Query:    4 EAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKAL-EYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADE 660
            E  H    AV A  +   + +  D+++ P  + D  G     +  GDAVV FNFR+DR   L + L +    D       P  R   M QYD    LP  +  + P      GE L   G      +ET K+ HVT+F NG R   FD    E V+ P  +  T+++QP+M A E+A+ A + I +     + +N  N DMVGHTGD +A V A +A DE
Sbjct:  219 EGDHHADEAVTAATESYAR-DTTDEFIEPTTVGDHAG-----LEAGDAVVFFNFRSDRARQLTRMLGDIRPEDWGSDTEPPDTRLVTMTQYDETFDLPVAFPPNQPA--DVLGEVLSEAGKTQIRLAETEKYPHVTYFLNGGREVAFDGESREIVDSPDVA--TYDLQPEMSAPELADTAIEFIETEDPSAMVLNFANPDMVGHTGDFDAAVTAVEAVDE 428          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_CHLSY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 77/247 (31.17%), Postives = 115/247 (46.56%), Query Frame = 1
Query:    1 GEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAG---------------------MLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            GE     ++A+EA        + +D+++ P VIV  +G+    + DGDAV+  NFR DR   L +A    D ++  R  + + +  G                     M QY  E  LP      P  +       +   G+R F  +ET K+ HVTFF NG R   F    E+   IPS    T++++P+M A E+ E    AI S ++  + VN  N DMVGHTG I A + AC+A D  +  ++
Sbjct:  211 GEKAPSARAAIEA----SYARDVSDEFVLPTVIVTASGEPTATVRDGDAVIFTNFRPDRGRQLTRAFVDPDLNERIRQHYERQKAEGQPLPATIWQRERQLRDLCFVTMTQY--EEGLPVLVAFPPRYVTNPLAAVISQAGLRQFHIAETEKYPHVTFFLNGGREEPFPG--EDRQLIPSPKVATYDLKPEMSAPEVTEALLAAIDSDQYDFIVVNYANPDMVGHTGSIPAVIKACEAVDAGLARVV 449          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_CHLAA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 77/247 (31.17%), Postives = 115/247 (46.56%), Query Frame = 1
Query:    1 GEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAG---------------------MLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            GE     ++A+EA        + +D+++ P VIV  +G+    + DGDAV+  NFR DR   L +A    D ++  R  + + +  G                     M QY  E  LP      P  +       +   G+R F  +ET K+ HVTFF NG R   F    E+   IPS    T++++P+M A E+ E    AI S ++  + VN  N DMVGHTG I A + AC+A D  +  ++
Sbjct:  211 GEKAPSARAAIEA----SYARDVSDEFVLPTVIVTASGEPTATVRDGDAVIFTNFRPDRGRQLTRAFVDPDLNERIRQHYERQKAEGQPLPATIWQRERQLRDLCFVTMTQY--EEGLPVLVAFPPRYVTNPLAAVISQAGLRQFHIAETEKYPHVTFFLNGGREEPFPG--EDRQLIPSPKVATYDLKPEMSAPEVTEALLAAIDSDQYDFIVVNYANPDMVGHTGSIPAVIKACEAVDAGLARVV 449          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_CAMJ8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 71/224 (31.70%), Postives = 116/224 (51.79%), Query Frame = 1
Query:   13 HKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIXC 684
            +K  + +E ++K  ++ N  D+++      +EN K +    + D ++  NFR DRM  L + L  +DF +F+R +  +     M  YD + KLP   L    +I+ T  + +   G+     +ET K+ HVTFF+NG +    ++  E  V IPS    T++ +P+M A E+ +  KK I  +    + VN  N DMVGHTGD  A + A +A D  +  I+ C
Sbjct:  203 YKVPNLLEYLQKSYDE-NVTDEFIK--AAQNENYKGMR---EEDGIIFINFRNDRMKQLVEVLNSKDFKEFEREKIFE-NLLTMSVYDDKFKLP--VLFEKEKIENTLAQVISKAGLSQLHTAETEKYAHVTFFFNGGKEELLEN--ETRVLIPSPKVKTYDEKPQMSAFEVCDAVKKGI-EKGEDFIVVNFANGDMVGHTGDFNAAIKAVEAVDTCLGEIVEC 414          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_STAES (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22
Identity = 61/219 (27.85%), Postives = 114/219 (52.05%), Query Frame = 1
Query:   22 KSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            K+ VEA  K     +  D+++ PF++  +N      + DGDAV+ +NFR DR   L++    + FD F   +   + YA   +Y+  +   +  +    +++ T GE    NG++    +ET K+ HVT+F +G R+  F+      ++ P  +  T++++P+M A E+ +   + +       + +N  N DMVGH+G +E T+ A +A DE +  ++
Sbjct:  217 KAGVEANYK----NDVTDEFVEPFIVEGQNDG----VNDGDAVIFYNFRPDRAAQLSEIFTNKAFDGFKVEQVDNLFYATFTKYNDNVD--AEIVFEKVDLNNTIGEVAQDNGLKQLRIAETEKYPHVTYFMSGGRNEEFEGERRRLIDSPKVA--TYDLKPEMSAYEVKDALLEELDKGDLDLILLNFANPDMVGHSGMLEPTIKAIEAVDECLGEVV 423          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_STAEQ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22
Identity = 61/219 (27.85%), Postives = 114/219 (52.05%), Query Frame = 1
Query:   22 KSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            K+ VEA  K     +  D+++ PF++  +N      + DGDAV+ +NFR DR   L++    + FD F   +   + YA   +Y+  +   +  +    +++ T GE    NG++    +ET K+ HVT+F +G R+  F+      ++ P  +  T++++P+M A E+ +   + +       + +N  N DMVGH+G +E T+ A +A DE +  ++
Sbjct:  217 KAGVEANYK----NDVTDEFVEPFIVEGQNDG----VNDGDAVIFYNFRPDRAAQLSEIFTNKAFDGFKVEQVDNLFYATFTKYNDNVD--AEIVFEKVDLNNTIGEVAQDNGLKQLRIAETEKYPHVTYFMSGGRNEEFEGERRRLIDSPKVA--TYDLKPEMSAYEVKDALLEELDKGDLDLILLNFANPDMVGHSGMLEPTIKAIEAVDECLGEVV 423          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_ANAVT (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22
Identity = 63/199 (31.66%), Postives = 95/199 (47.74%), Query Frame = 1
Query:   70 NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAV 666
            ND+++ P  I      A G +  GD V+ FNFR DR   L +A    +F  F R +   + +    QYD +L +   +   P  +    GE + + G+  F  +ET K+ HVT+F+NG     F     E V  P  +  T++  P M A  + + A  AI    +  + +N  N DMVGHTG IE T+ A +  D  +
Sbjct:  232 NDEFIVPVRI------APGTVESGDGVIFFNFRPDRSRQLTQAFVSPEFTGFARQQIKPLSFVTFTQYDSDLSVSVAF--EPQNLTNILGEVIANQGLNQFRTAETEKYAHVTYFFNGGLEEPFAGEDRELVSSPMVA--TYDKAPAMSATAVTDTAIAAIQKGIYSLIVINYANPDMVGHTGQIEPTIQAIETVDRCL 420          
The following BLAST results are available for this feature:
BLAST of FC930478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 271
Match NameE-valueIdentityDescription
GPMI_RUTMC1.204e-2231.112,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_EHRCR1.204e-2232.352,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CAMJR1.572e-2232.142,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HALMA2.054e-2234.552,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHLSY2.054e-2231.172,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHLAA2.054e-2231.172,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CAMJ82.054e-2231.702,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_STAES3.503e-2227.852,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_STAEQ3.503e-2227.852,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ANAVT3.503e-2231.662,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34008A03EF PostHarvC1 Citrus clementina cDNA clone C34008A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930478 ID=FC930478; Name=FC930478; organism=Citrus clementina; type=EST; length=684bp
GGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGTCAAAAAACT
AAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCATTTGTCATTG
TTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGTGATGCAGTT
GTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGCTAAGGCCCT
TGAATATGAAGATTTTGACAAATTTGATCGAGTTCGGTTCCCTAAAATCC
GTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTTCCCAGTCAT
TACCTTGTGTCTCCTCCAGAGATAGACAGAACATCTGGTGAATATTTAGT
GCATAATGGTGTCCGTACTTTTGCTTGCAGTGAGACTGTCAAGTTTGGAC
ATGTCACTTTCTTCTGGAATGGAAACCGCTCTGGGTATTTCGACTCGAAT
TTGGAGGAATATGTGGAAATTCCTAGTGATTCTGGAATTACTTTCAATGT
ACAGCCCAAGATGAAGGCTTTGGAGATTGCTGAGAGGGCAAAGAAGGCCA
TCCTTAGTCGCAGGTTCCACCAGGTACGTGTTAACCTACCAAATAGTGAC
ATGGTGGGGCACACGGGAGATATTGAGGCAACAGTGGTGGCATGCAAGGC
TGCTGATGAAGCTGTCAAGATAATCATTNGATGC
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